The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
98
|
Knots found |
|
sequence length |
333
|
structure length |
333
|
Chain Sequence |
EKIKLEHGAGGEIMEELLRDVILKTLTLKSAGGIGLDALDDGATIPFGDKHIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVITAGIGIAEHPVSDAGAKVGDAVLVSGTIGDHGIALMSHREGIAFETELKSDVAPIWDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLETGIGGKRFMEPPEGDPVP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
pubmed doi rcsb |
| molecule tags |
Metal binding protein/transferase
|
| source organism |
Thermococcus kodakarensis
|
| molecule keywords |
Hydrogenase expression/formation protein HypC
|
| total genus |
98
|
| structure length |
333
|
| sequence length |
333
|
| other databases |
 KnotProt 2.0: K
|
| ec nomenclature | |
| pdb deposition date | 2012-10-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF00586 | AIRS | AIR synthase related protein, N-terminal domain |
| C | PF02769 | AIRS_C | AIR synthase related protein, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | PurM-like, N-terminal domain | ||
| Alpha Beta | Alpha-Beta Complex | Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 | PurM-like C-terminal domain |
#chains in the Genus database with same CATH superfamily 2RB9 A; 3WJP A; 3VYS C; 3FD5 A; 2HS3 A; 2Z1T A; 2BTU A; 3VYU C; 2HS0 A; 3FD6 A; 5AVM A; 1VQV A; 2HRU A; 3QTY A; 1VK3 A; 3VYT C; 3MCQ A; 3MDO A; 3VIU A; 2ZAU A; 2V9Y A; 3WJR A; 3D54 A; 3C9T A; 2HS4 A; 3C9S A; 2I6R A; 3C9R A; 3WJQ A; 3KIZ A; 2YYE A; 3U0O A; 2Z01 A; 2Z1U A; 1CLI A; 3VTI C; 2YXZ A; 2ZOD A; 2HRY A; 3M84 A; 3P4E A; 2Z1F A; 3C9U A; 2Z1E A; #chains in the Genus database with same CATH topology 2RHH A; 3VI6 A; 2UYN A; 4HNA B; 1NQ3 A; 3I7T A; 3ON1 A; 5HP7 A; 2HRU A; 3CCL F; 4I4T A; 4ZK7 A; 3LYB A; 1KNJ A; 4BT5 A; 3RA5 A; 3HKC A; 4ZHV A; 4O4H B; 4TV8 A; 4O4I A; 4EB6 B; 1W41 A; 3OW2 F; 3TD5 A; 2YYE A; 2PHN A; 4DXD A; 5JCO A; 2RHJ A; 1UFY A; 1FNK A; 3JAK B; 3N2K B; 1Z5W A; 2HQS C; 3PAF A; 1Q86 H; 2Z1E A; 3F0G A; 1U3L A; 3HKB A; 3V7E A; 3ERN A; 5CB4 B; 4FFB B; 1YHQ F; 3JAT A; 3DC2 A; 5FJ4 C; 4YJ3 B; 4B46 A; 3P10 A; 1VQ7 F; 3LWQ C; 1YIJ F; 4I50 B; 3QUW A; 3I56 F; 2LBW A; 2UYK A; 1VHA A; 3N4Y A; 4DRX B; 1YIT F; 1Q81 H; 1E7K A; 5JQG A; 3U0O A; 3MBM A; 5HY2 A; 3HKE B; 5BMV B; 5LYJ B; 3QHD A; 2WAL A; 2R75 1; 2AMT A; 5MN6 A; 3UT5 B; 4O4L A; 2BTU A; 1T0A A; 4X1I B; 1IV3 A; 3HWU A; 1VQM F; 4IHJ A; 3D54 A; 1TUB B; 1COM A; 3CYQ A; 3IKF A; 3IKE A; 2HP3 A; 2OTJ F; 4TUY A; 5IYZ B; 5ITZ A; 2RHO A; 3M84 A; 3K2X A; 5IJ9 A; 2K1S A; 3OON A; 1YJW F; 3WJP A; 5GON A; 3FD5 A; 5GAN K; 1Q7Y H; 1CK2 A; 2KGW A; 4X1Y A; 2HP0 A; 3IR9 A; 4BVR A; 4O2A B; 2VAP A; 1FNJ A; 3HJW C; 3VYT C; 3MCQ A; 3MDO A; 3WJR A; 2CVL A; 3G71 F; 5EYP B; 3ZOP A; 3VO8 A; 3C9T A; 2F9Z C; 5J2U A; 3C9R A; 2CZW A; 1X7P A; 3KE1 A; 2ZVY A; 3WXM B; 3CC2 F; 2ZVZ A; 2Q1Y A; 2BO1 A; 5EB1 B; 5DCV A; 3J7A R; 3JAL A; 5GIN C; 4EI9 A; 4F6R B; 4X1K B; 1CN7 A; 1TVK A; 2CW4 A; 2P6Y A; 3JAW A; 4BT3 A; 3JAS B; 3S0Y A; 1GX1 A; 3ZP7 A; 3C8L A; 3G4S F; 2Z1T A; 4WBN A; 5GAP K; 1PXW A; 1VQL F; 3DDN A; 3E22 B; 1FFX A; 2UYJ A; 4X3M A; 5KMG B; 3RYH A; 4C81 A; 3VOA A; 2EWC A; 3MCA B; 3CB2 A; 2CWJ A; 2IQQ A; 3OBW A; 5KX5 B; 2Z1U A; 3JAR B; 1GZ0 A; 4EI7 A; 3P4E A; 1VQK F; 2IG8 A; 2GLZ A; 3S03 A; 1QAH A; 4O4H A; 4ZHQ B; 3CCS F; 3O85 A; 1W58 1; 3J81 M; 3IMP A; 3P0Z A; 4LNU A; 4XCQ A; 4G88 A; 3CCV F; 3RYC B; 1RLU A; 2N48 A; 3HKD A; 3R0P A; 1VQN F; 2KTV A; 1OFU A; 5AVM A; 4BT7 A; 1Q82 H; 3I3F A; 1DBF A; 1VQO F; 4I55 B; 3WPX A; 5CA1 A; 3KJK A; 5HWE A; 4B5C A; 4BT4 A; 4O2B A; 5C8Y A; 4BT6 A; 3SIV A; 5B8F A; 1SA0 A; 5EIB C; 4TV9 B; 4TZZ A; 2QA4 F; 2AIZ P; 2Z01 A; 4YJ2 A; 3WGN A; 1XRG A; 2YXZ A; 1JJ2 F; 3NK6 A; 1XBI A; 4ZI7 A; 3MQW A; 3WGJ A; 3LME A; 1W5A A; 1DT9 A; 5IT9 M; 1GO1 A; 5LA6 A; 5JVD B; 3S0W A; 5JH7 B; 1H47 A; 3CYP B; 4IIJ A; 1RQ2 A; 3JAM M; 1W57 A; 1FSZ A; 3WPW A; 1W55 A; 2CHT A; 2UYP A; 5HY1 A; 1W2B F; 4U3J A; 3CCJ F; 1U40 A; 3RYF A; 4X1I A; 3F0F A; 1GO0 A; 5JCO C; 1JFF A; 1XV2 A; 1KQS F; 2UYN B; 4ERH A; 3VTI C; 4ZHY B; 2QI2 A; 2ZOD A; 3ZP4 A; 4I4T B; 4ZOL A; 1K9M H; 1J7H A; 3HKC B; 4O4J A; 2QEX F; 1KD1 H; 5EB0 A; 3GTZ A; 4RQO A; 5EZY A; 4C8I A; 4TV8 B; 1X25 A; 4O4I B; 1QD9 A; 3VIU A; 3TD4 A; 1H48 A; 5LOV A; 3GHZ A; 2B33 A; 3D01 A; 3KHN A; 3HKB B; 1CLI A; 3JAT B; 3T80 A; 5LP6 A; 3CCE F; 1N8R H; 3CME F; 1X7O A; 3L7Q A; 5FNV A; 4NUT A; 4BVS A; 3VYS C; 1U3P A; 3N2G A; 3V3T A; 3CXC F; 1R1M A; 5LXT A; 3RE3 A; 3VCZ A; 1W59 A; 2HX0 A; 1K8A H; 5JQG B; 2ZOV A; 3EOR A; 3IEQ A; 2I6D A; 4BY9 D; 1ODE A; 3RYI A; 3CPQ A; 2HS4 A; 2OHW A; 3S06 A; 4O4L B; 5CA0 A; 3LFO A; 4B45 A; 1RQ7 A; 5IJ0 A; 2FGY A; 3N4Z A; 5J2T A; 5HY4 A; 2HVY D; 1KC8 H; 3CC4 F; 4IHJ B; 5A2Q M; 4X3L A; 1X52 A; 1Q8R A; 3JCM M; 4RHA A; 1VQP F; 3V7Q A; 3NK7 A; 4C4W C; 3HTN A; 1ZWZ A; 4X20 A; 1JN1 A; 4TUY B; 1YJ9 F; 5ITZ B; 5G4U C; 2CSL A; 3CMA F; 1W5E A; 5IJ9 B; 2RHL A; 4HNA A; 2FC3 A; 2VXY A; 2GZL A; 5GON B; 3FPI A; 2OZB A; 1W3E X; 1UI9 A; 2KG4 A; 1QVG F; 4ZHW A; 3AGK A; 3S02 A; 4X1Y B; 2HP0 B; 4B62 A; 3VOB A; 4C8E A; 4EB6 A; 3FFM A; 5MN5 A; 3J80 M; 5J2U B; 3JAK A; 3N2K A; 4G4V A; 1W40 A; 4E6E A; 1VK3 A; 5GIO C; 1YGY A; 3CCU F; 3LWP C; 3JAL B; 4BW0 B; 2VAW A; 4BT2 A; 3C9S A; 4FFB A; 5CB4 A; 1S72 F; 1TVK B; 2L26 A; 3VMF B; 3WJQ A; 4G4W A; 3JAW B; 3F0E A; 3OBY A; 2MQE A; 4YJ3 A; 5HY0 A; 1KNK A; 3IEW A; 3CD6 F; 1VQ8 F; 4WBN B; 4I50 A; 1YQN A; 2UZH A; 4DRX A; 1FFX B; 3RYH B; 1Z5V A; 2OTL F; 4C82 A; 5GIP C; 3HKE A; 5HXZ A; 1SDS A; 5BMV A; 5LYJ A; 3WGL A; 2KTU A; 2VGN A; 5EIB D; 5EAZ A; 3UT5 A; 5G4V C; 3RA6 A; 3B6N A; 3V4D A; 3GYQ A; 3NVI B; 4LNU B; 3NMU C; 5EWR A; 4NQ3 A; 3HKD B; 3LWV C; 1TUB A; 1JD1 A; 2DT4 A; 2OTM A; 3K14 A; 4BVT A; 5CA1 B; 1QU9 A; 2ALE A; 5IYZ A; 3LDT A; 4O2B B; 5C8Y B; 3S0H A; 1SA0 B; 4C8G A; 1VQ5 F; 3SIU A; 1YI2 F; 3FBA A; 3LWO C; 3BYQ A; 4YJ2 B; 1VQ9 F; 1QVF F; 4ZI7 B; 1IV1 A; 3ELC A; 2G9I A; 4O2A A; 4G4Y A; 1SZQ A; 5LA6 B; 4IIJ B; 3M1X A; 4EI8 A; 2BTQ B; 5FLX M; 1M1K H; 5EYP A; 2H6L A; 1IV4 A; 3C9U A; 4R40 B; 1K73 H; 4U3J B; 2H8E A; 3Q8H A; 1H7M A; 3RYF B; 1RA4 A; 3VYU C; 2HS0 A; 2ZF8 A; 4F6R A; 4X1K A; 3E20 B; 1JFF B; 2CHS A; 1VQ4 F; 1VQ6 F; 2ZAU A; 2V9Y A; 3JAS A; 2LBX A; 2BTO A; 2LBT A; 2DYY A; 3JVH A; 4U39 A; 3ESJ A; 1NMU B; 4ZOL B; 2JNB A; 3E22 A; 4PWT A; 5LP6 C; 4O4J B; 5KMG A; 3CC7 F; 1VH8 A; 1W5F A; 5EZY B; 1OAP A; 3F6M A; 1JY8 A; 2LCA A; 1M90 H; 3CCR F; 3K12 A; 2RB9 A; 1XHO A; 5KX5 A; 2VGM A; 3CG6 A; 3JAR A; 5EO3 A; 4NWO B; 5LOV B; 3I55 F; 1NJI H; 1RLG A; 3M4S A; 1ONI A; 1VQV A; 3QTY A; 4ZHQ A; 4BVQ A; 2PMP A; 1T0K B; 3LWR C; 5LP6 B; 5MN4 A; 3CCQ F; 1PF5 A; 3RYC A; 2I6R A; 4LCK A; 2R6R 1; 5FNV B; 1U43 A; 3N2G B; 4I55 A; 5LXT B; 2GVI A; 3D00 A; 3WGK A; 2HRY A; 1IV2 A; 2Z1F A; 2H8C A; 3NVK E; 3G6E F; 1IPA A; 4TV9 A; 1W42 A; 1W5B A; 2HS3 A; 3F0D A; 3RYI B; 4KWE A; 3KJJ A; 3WGM A; 3FD6 A; 3PLA C; 5CA0 B; 5J2T B; 3ZO8 A; 5IJ0 B; 2IAF A; 4G4Z A; 3CPW F; 3HAX D; 3K0T A; 5JH7 A; 5JVD A; 1YJN F; 5HXU A; 3CCM F; 2VAM A; 2Q1X A; 2AIF A; 3KIZ A; 4M8I A; 5HP8 A; 3E1Y A; 4G4X A; 2QTP A; 4X20 B; 2NMU A; 2W8B C; 3TD3 A; #chains in the Genus database with same CATH homology 2RB9 A; 3WJP A; 3VYS C; 3FD5 A; 2HS3 A; 2Z1T A; 2BTU A; 3VYU C; 2HS0 A; 3FD6 A; 5AVM A; 1VQV A; 2HRU A; 3QTY A; 1VK3 A; 3VYT C; 3MCQ A; 3MDO A; 3VIU A; 2ZAU A; 2V9Y A; 3WJR A; 3D54 A; 3C9T A; 2HS4 A; 3C9S A; 2I6R A; 3C9R A; 3WJQ A; 3KIZ A; 2YYE A; 3U0O A; 2Z01 A; 2Z1U A; 1CLI A; 3VTI C; 2YXZ A; 2ZOD A; 2HRY A; 3M84 A; 3P4E A; 2Z1F A; 3C9U A; 2Z1E A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
