4RQOA

Crystal structure of l-serine dehydratase from legionella pneumophila
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
457
structure length
444
Chain Sequence
NISVFDLFSIGIGPSSSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDKNPPPYPFATATELLKLCKKHHLTIAELMLVNEKTWRSTAEIHKGILDIAKVMDDCINNGCKHDGVLPGGLNLKRRAPDLYRKLIFEQSDIMNHLNLYAMAVNEENAAGGRIVTAPTNGAAGIIPAVLKYCQQAHDRMSNEDIYTYFLTAAAIGILYKKGASISGAEVGCQGEVGVASSMAAAGLTAVLGGTIEQVENAAEIAMEHHLGMTCDPVLGLVQIPCIERNAMGAVKAVNATRMALIGDGQHQISLDKVIKTMKQTGMDMQSIYKETSMGGLAVNLPEC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Legionella pneumophila subsp. pneumophila str. thunder bay
publication title Structure of l-Serine Dehydratase from Legionella pneumophila: Novel Use of the C-Terminal Cysteine as an Intrinsic Competitive Inhibitor.
pubmed doi rcsb
molecule keywords L-serine dehydratase
total genus 139
structure length 444
sequence length 457
chains with identical sequence B
ec nomenclature ec 4.3.1.17: L-serine ammonia-lyase.
pdb deposition date 2014-11-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.90 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; D-3-phosphoglycerate dehydrogenase; domain 3 4rqoA01
2IAFA 1YGYA 3DDNA 3DC2A 4RQOA 2IQQA
chains in the Genus database with same CATH superfamily
4BT4A 4G88A 4TV9B 5LP6C 5J2TB 5LXTB 1YI2F 3K12A 1TVKB 3HKDB 4O2BB 4I55B 5CB4A 2IQQA 3KIZA 2KG4A 2LBTA 5G4UC 3RYHA 2OTMA 3JALA 1Q7YH 4F6RA 3VIUA 3ZP7A 3JVHA 3M84A 3CPWF 4ZHQB 5MN5A 4BT5A 3JARB 5GONB 3G4SF 5EIBC 4TV9A 5G4VC 3WGMA 5J2TA 4B46A 5LXTA 4O4IA 3C8LA 1TVKA 3HKDA 4O2BA 3WJRA 1TUBB 4I55A 2R6R1 1W40A 2QA4F 3F0EA 2W8BC 3D00A 3F6MA 3B6NA 3GTZA 5JH7B 5GONA 1XV2A 3CCEF 2CW4A 2UYJA 1X52A 1GO1A 2Z01A 3CCMF 1K73H 3HJWC 4EI8A 1TUBA 4R40B 1SA0B 3DC2A 2CWJA 2H8CA 3OBYA 5JH7A 5MN4A 3LDTA 3JCMM 1R1MA 3MDOA 1NMUB 1NQ3A 2JNBA 1E7KA 3DDNA 2KTVA 3CCSF 1SA0A 1Q82H 2RHJA 3CCVF 4ERHA 4TV8B 5ITZB 5EIBD 3VCZA 2LBXA 1Z5VA 3BYQA 3MBMA 3CC2F 3CCQF 1YITF 3SIUA 4FFBB 4NWOB 3LWPC 1YJNF 4YJ3B 2VAMA 3AGKA 3S03A 1W3EX 5HXZA 3CC4F 5JCOC 4TV8A 1GZ0A 3CYQA 5ITZA 4B45A 4C4WC 3C9RA 3OONA 1QU9A 1XRGA 5BMVA 2GZLA 2HS0A 3TD3A 2F9ZC 4LNUB 4DXDA 1GX1A 3CMEF 1YQNA 3N2GA 3QHDA 1KNJA 2MQEA 3MCQA 4EB6B 3WGLA 1U3LA 2R751 3KE1A 2PMPA 5GIOC 5IYZB 4LNUA 3WGNA 1Q86H 3NMUC 3UT5B 3VOAA 1GO0A 3CB2A 3N4YA 3NVIB 3P10A 3M4SA 3RA6A 3F0GA 5HY2A 4U3JB 2HVYD 4HNAB 2N48A 2V9YA 5HP8A 1VQLF 2QTPA 1FFXB 1W42A 4EB6A 2VXYA 4XCQA 3M1XA 3NK7A 2G9IA 2HX0A 3NVKE 5IYZA 2DT4A 3UT5A 3IMPA 4O4IB 2AMTA 4C8IA 1K8AH 2CHTA 4U3JA 4BW0B 3PAFA 4HNAA 2Z1UA 3HKBA 3JAMM 4NQ3A 4M8IA 2ZVZA 1FFXA 3I3FA 4X20B 1Z5WA 5C8YB 3P4EA 1PXWA 3LWVC 3SIVA 2KTUA 3JATB 3VYTC 3CCJF 4O4LB 4X1KB 5EAZA 1Q8RA 3MCAB 4C8GA 5MN6A 1COMA 3D54A 3CCUF 3CD6F 1RQ7A 2LCAA 3CPQA 1VQ4F 3LFOA 1ODEA 1RQ2A 4YJ2B 3G6EF 2BTQB 4X1IB 5KX5B 3HKCB 4X20A 5C8YA 1RA4A 3HKEB 3JATA 1M1KH 3S0YA 2PHNA 4O4LA 4X1KA 4BT6A 3F0DA 2HP0B 3JAWB 3V7EA 4WBNB 2B33A 4G4YA 4E6EA 4YJ2A 4X3LA 4X1IA 5LP6A 5KX5A 3I7TA 3FD6A 3HKCA 3T80A 2BO1A 3HKEA 2GLZA 3K2XA 2DYYA 2CZWA 1VQPF 2HP0A 2Q1YA 3JAWA 1VQVA 5EB1B 4C81A 3N4ZA 2ALEA 3V7QA 3WGJA 2ZVYA 4WBNA 3IEWA 1W5EA 1RLUA 2CHSA 2OZBA 2CSLA 1OAPA 4BVSA 2OHWA 1S72F 5EB0A 3RE3A 1QVFF 2Z1EA 1YHQF 3VTIC 2EWCA 3FBAA 5BMVB 3RYCA 5B8FA 3VYSC 5HWEA 5IT9M 1VQ8F 1VQ6F 5FNVB 4RQOA 5HY0A 4I50B 4ZHWA 3N2GB 4BT7A 3CG6A 2FC3A 1U3PA 5LOVA 2YYEA 3I55F 3HAXD 2NMUA 2I6DA 4O4JB 4U39A 1CK2A 1U40A 4BT2A 1VQNF 5FNVA 1FNKA 3HTNA 3GYQA 4I50A 2FGYA 3WPXA 2UYNB 3FFMA 3Q8HA 5J2UB 1YJ9F 5EWRA 3S06A 1T0KB 3WGKA 3RYFB 5EYPB 2ZODA 5HY4A 1VQMF 5JVDB 4O4JA 4TUYA 2IAFA 5EO3A 2HRUA 1YIJF 1X7OA 3VOBA 3ERNA 3I56F 1U43A 4BVTA 3JASB 1W41A 2UYNA 3C9SA 3P0ZA 3VYUC 1JN1A 2AIFA 3HKBB 3TD5A 4KWEA 5J2UA 3HWUA 1H48A 2UYPA 3RYFA 1X25A 3F0FA 5EYPA 2RB9A 1YJWF 5JVDA 5GINC 1QD9A 5JCOA 3R0PA 2QEXF 2K1SA 3IR9A 3N2KB 4DRXB 1OFUA 4C82A 2HQSC 4NUTA 2WALA 1ONIA 2ZOVA 3JASA 4IHJB 2P6YA 4X1YB 2HS3A 2OTLF 3NK6A 1JJ2F 4O4HB 3VMFB 1VQ9F 1T0AA 3L7QA 3ZP4A 3ELCA 4PWTA 1W581 1FSZA 1W57A 1DT9A 3N2KA 4DRXA 5LYJB 1K9MH 2IG8A 4O2AB 3KHNA 1RLGA 4IIJB 4IHJA 1VHAA 4X1YA 1IV3A 5KMGA 4BT3A 4ZI7B 2H6LA 4O4HA 1SDSA 1VQKF 3WXMB 3ON1A 4B62A 5LP6B 1SZQA 3V4DA 3V3TA 3CCRF 2AIZP 3IKFA 5GIPC 3E20B 1IV2A 5LYJA 2Z1FA 5IJ9B 2UZHA 4O2AA 3U0OA 4IIJA 3KJJA 4ZOLB 1KD1H 5CA1B 1W59A 4ZI7A 4C8EA 4B5CA 1W55A 1XBIA 2OTJF 1VQOF 3O85A 3WPWA 4ZHQA 3LWQC 1QAHA 1X7PA 3JARA 2QI2A 4EI7A 1PF5A 3EORA 3G71F 3CMAF 2I6RA 5IJ9A 3RYCB 5JQGB 3RYIB 4ZOLA 5GAPK 2LBWA 5CA1A 3S02A 5HXUA 2KGWA 1XHOA 1W5BA 5A2QM 3S0HA 2CVLA 3E1YA 2UYKA 3WJPA 2GVIA 3QTYA 5LOVB 1DBFA 4RHAA 4ZHVA 4X3MA 2ZF8A 3J7AR 2RHLA 5JQGA 2HP3A 2ZAUA 3RYIA 2BTUA 4ZK7A 3C9UA 3TD4A 3LWOC 5EZYB 3E22B 3IKEA 5CA0B 3CC7F 1UI9A 2VGMA 1VQ5F 2VAWA 2Z1TA 4TZZA 4ZHYB 1Q81H 3PLAC 4I4TB 4TUYB 5DCVA 3RA5A 5LA6B 2RHOA 4G4ZA 1ZWZA 1N8RH 5EZYA 3E22A 2YXZA 5CA0A 1IPAA 3VI6A 3VO8A 1IV4A 3LMEA 3D01A 3S0WA 3C9TA 3CXCF 3OBWA 1KC8H 3LYBA 5IJ0B 1VQ7F 3LWRC 1YGYA 1JFFB 4I4TA 1M90H 1W2BF 4BVRA 1H47A 5LA6A 4BVQA 4FFBA 3ESJA 3FD5A 4YJ3A 3WJQA 3ZOPA 2RHHA 3K0TA 4BY9D 3J81M 1UFYA 5HP7A 4G4XA 5FJ4C 1VK3A 1KNKA 3K14A 3KJKA 4G4WA 1NJIH 1CLIA 1JD1A 3CYPB 5AVMA 1VH8A 1QVGF 4EI9A 5HY1A 5IJ0A 2HRYA 3JAKB 1JFFA 1J7HA 5GANK 2VAPA 1H7MA 1IV1A 2H8EA 3CCLF 2HS4A 1W5FA 3QUWA 3ZO8A 5FLXM 3J80M 1W5AA 3MQWA 2Q1XA 4LCKA 1FNJA 5KMGB 1CN7A 3IEQA 5CB4B 3FPIA 1KQSF 2BTOA 4G4VA 3OW2F 2L26A 3RYHB 3JALB 4F6RB 3JAKA 3GHZA 1JY8A 2VGNA
chains in the Genus database with same CATH topology
2IAFA 1YGYA 3DDNA 3DC2A 4RQOA 2IQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IAF A;  1YGY A;  3DDN A;  3DC2 A;  4RQO A;  2IQQ A; 
#chains in the Genus database with same CATH topology
 4BT4 A;  4G88 A;  4TV9 B;  5LP6 C;  5J2T B;  5LXT B;  1YI2 F;  3K12 A;  1TVK B;  3HKD B;  4O2B B;  4I55 B;  5CB4 A;  2IQQ A;  3KIZ A;  2KG4 A;  2LBT A;  5G4U C;  3RYH A;  2OTM A;  3JAL A;  1Q7Y H;  4F6R A;  3VIU A;  3ZP7 A;  3JVH A;  3M84 A;  3CPW F;  4ZHQ B;  5MN5 A;  4BT5 A;  3JAR B;  5GON B;  3G4S F;  5EIB C;  4TV9 A;  5G4V C;  3WGM A;  5J2T A;  4B46 A;  5LXT A;  4O4I A;  3C8L A;  1TVK A;  3HKD A;  4O2B A;  3WJR A;  1TUB B;  4I55 A;  2R6R 1;  1W40 A;  2QA4 F;  3F0E A;  2W8B C;  3D00 A;  3F6M A;  3B6N A;  3GTZ A;  5JH7 B;  5GON A;  1XV2 A;  3CCE F;  2CW4 A;  2UYJ A;  1X52 A;  1GO1 A;  2Z01 A;  3CCM F;  1K73 H;  3HJW C;  4EI8 A;  1TUB A;  4R40 B;  1SA0 B;  3DC2 A;  2CWJ A;  2H8C A;  3OBY A;  5JH7 A;  5MN4 A;  3LDT A;  3JCM M;  1R1M A;  3MDO A;  1NMU B;  1NQ3 A;  2JNB A;  1E7K A;  3DDN A;  2KTV A;  3CCS F;  1SA0 A;  1Q82 H;  2RHJ A;  3CCV F;  4ERH A;  4TV8 B;  5ITZ B;  5EIB D;  3VCZ A;  2LBX A;  1Z5V A;  3BYQ A;  3MBM A;  3CC2 F;  3CCQ F;  1YIT F;  3SIU A;  4FFB B;  4NWO B;  3LWP C;  1YJN F;  4YJ3 B;  2VAM A;  3AGK A;  3S03 A;  1W3E X;  5HXZ A;  3CC4 F;  5JCO C;  4TV8 A;  1GZ0 A;  3CYQ A;  5ITZ A;  4B45 A;  4C4W C;  3C9R A;  3OON A;  1QU9 A;  1XRG A;  5BMV A;  2GZL A;  2HS0 A;  3TD3 A;  2F9Z C;  4LNU B;  4DXD A;  1GX1 A;  3CME F;  1YQN A;  3N2G A;  3QHD A;  1KNJ A;  2MQE A;  3MCQ A;  4EB6 B;  3WGL A;  1U3L A;  2R75 1;  3KE1 A;  2PMP A;  5GIO C;  5IYZ B;  4LNU A;  3WGN A;  1Q86 H;  3NMU C;  3UT5 B;  3VOA A;  1GO0 A;  3CB2 A;  3N4Y A;  3NVI B;  3P10 A;  3M4S A;  3RA6 A;  3F0G A;  5HY2 A;  4U3J B;  2HVY D;  4HNA B;  2N48 A;  2V9Y A;  5HP8 A;  1VQL F;  2QTP A;  1FFX B;  1W42 A;  4EB6 A;  2VXY A;  4XCQ A;  3M1X A;  3NK7 A;  2G9I A;  2HX0 A;  3NVK E;  5IYZ A;  2DT4 A;  3UT5 A;  3IMP A;  4O4I B;  2AMT A;  4C8I A;  1K8A H;  2CHT A;  4U3J A;  4BW0 B;  3PAF A;  4HNA A;  2Z1U A;  3HKB A;  3JAM M;  4NQ3 A;  4M8I A;  2ZVZ A;  1FFX A;  3I3F A;  4X20 B;  1Z5W A;  5C8Y B;  3P4E A;  1PXW A;  3LWV C;  3SIV A;  2KTU A;  3JAT B;  3VYT C;  3CCJ F;  4O4L B;  4X1K B;  5EAZ A;  1Q8R A;  3MCA B;  4C8G A;  5MN6 A;  1COM A;  3D54 A;  3CCU F;  3CD6 F;  1RQ7 A;  2LCA A;  3CPQ A;  1VQ4 F;  3LFO A;  1ODE A;  1RQ2 A;  4YJ2 B;  3G6E F;  2BTQ B;  4X1I B;  5KX5 B;  3HKC B;  4X20 A;  5C8Y A;  1RA4 A;  3HKE B;  3JAT A;  1M1K H;  3S0Y A;  2PHN A;  4O4L A;  4X1K A;  4BT6 A;  3F0D A;  2HP0 B;  3JAW B;  3V7E A;  4WBN B;  2B33 A;  4G4Y A;  4E6E A;  4YJ2 A;  4X3L A;  4X1I A;  5LP6 A;  5KX5 A;  3I7T A;  3FD6 A;  3HKC A;  3T80 A;  2BO1 A;  3HKE A;  2GLZ A;  3K2X A;  2DYY A;  2CZW A;  1VQP F;  2HP0 A;  2Q1Y A;  3JAW A;  1VQV A;  5EB1 B;  4C81 A;  3N4Z A;  2ALE A;  3V7Q A;  3WGJ A;  2ZVY A;  4WBN A;  3IEW A;  1W5E A;  1RLU A;  2CHS A;  2OZB A;  2CSL A;  1OAP A;  4BVS A;  2OHW A;  1S72 F;  5EB0 A;  3RE3 A;  1QVF F;  2Z1E A;  1YHQ F;  3VTI C;  2EWC A;  3FBA A;  5BMV B;  3RYC A;  5B8F A;  3VYS C;  5HWE A;  5IT9 M;  1VQ8 F;  1VQ6 F;  5FNV B;  4RQO A;  5HY0 A;  4I50 B;  4ZHW A;  3N2G B;  4BT7 A;  3CG6 A;  2FC3 A;  1U3P A;  5LOV A;  2YYE A;  3I55 F;  3HAX D;  2NMU A;  2I6D A;  4O4J B;  4U39 A;  1CK2 A;  1U40 A;  4BT2 A;  1VQN F;  5FNV A;  1FNK A;  3HTN A;  3GYQ A;  4I50 A;  2FGY A;  3WPX A;  2UYN B;  3FFM A;  3Q8H A;  5J2U B;  1YJ9 F;  5EWR A;  3S06 A;  1T0K B;  3WGK A;  3RYF B;  5EYP B;  2ZOD A;  5HY4 A;  1VQM F;  5JVD B;  4O4J A;  4TUY A;  2IAF A;  5EO3 A;  2HRU A;  1YIJ F;  1X7O A;  3VOB A;  3ERN A;  3I56 F;  1U43 A;  4BVT A;  3JAS B;  1W41 A;  2UYN A;  3C9S A;  3P0Z A;  3VYU C;  1JN1 A;  2AIF A;  3HKB B;  3TD5 A;  4KWE A;  5J2U A;  3HWU A;  1H48 A;  2UYP A;  3RYF A;  1X25 A;  3F0F A;  5EYP A;  2RB9 A;  1YJW F;  5JVD A;  5GIN C;  1QD9 A;  5JCO A;  3R0P A;  2QEX F;  2K1S A;  3IR9 A;  3N2K B;  4DRX B;  1OFU A;  4C82 A;  2HQS C;  4NUT A;  2WAL A;  1ONI A;  2ZOV A;  3JAS A;  4IHJ B;  2P6Y A;  4X1Y B;  2HS3 A;  2OTL F;  3NK6 A;  1JJ2 F;  4O4H B;  3VMF B;  1VQ9 F;  1T0A A;  3L7Q A;  3ZP4 A;  3ELC A;  4PWT A;  1W58 1;  1FSZ A;  1W57 A;  1DT9 A;  3N2K A;  4DRX A;  5LYJ B;  1K9M H;  2IG8 A;  4O2A B;  3KHN A;  1RLG A;  4IIJ B;  4IHJ A;  1VHA A;  4X1Y A;  1IV3 A;  5KMG A;  4BT3 A;  4ZI7 B;  2H6L A;  4O4H A;  1SDS A;  1VQK F;  3WXM B;  3ON1 A;  4B62 A;  5LP6 B;  1SZQ A;  3V4D A;  3V3T A;  3CCR F;  2AIZ P;  3IKF A;  5GIP C;  3E20 B;  1IV2 A;  5LYJ A;  2Z1F A;  5IJ9 B;  2UZH A;  4O2A A;  3U0O A;  4IIJ A;  3KJJ A;  4ZOL B;  1KD1 H;  5CA1 B;  1W59 A;  4ZI7 A;  4C8E A;  4B5C A;  1W55 A;  1XBI A;  2OTJ F;  1VQO F;  3O85 A;  3WPW A;  4ZHQ A;  3LWQ C;  1QAH A;  1X7P A;  3JAR A;  2QI2 A;  4EI7 A;  1PF5 A;  3EOR A;  3G71 F;  3CMA F;  2I6R A;  5IJ9 A;  3RYC B;  5JQG B;  3RYI B;  4ZOL A;  5GAP K;  2LBW A;  5CA1 A;  3S02 A;  5HXU A;  2KGW A;  1XHO A;  1W5B A;  5A2Q M;  3S0H A;  2CVL A;  3E1Y A;  2UYK A;  3WJP A;  2GVI A;  3QTY A;  5LOV B;  1DBF A;  4RHA A;  4ZHV A;  4X3M A;  2ZF8 A;  3J7A R;  2RHL A;  5JQG A;  2HP3 A;  2ZAU A;  3RYI A;  2BTU A;  4ZK7 A;  3C9U A;  3TD4 A;  3LWO C;  5EZY B;  3E22 B;  3IKE A;  5CA0 B;  3CC7 F;  1UI9 A;  2VGM A;  1VQ5 F;  2VAW A;  2Z1T A;  4TZZ A;  4ZHY B;  1Q81 H;  3PLA C;  4I4T B;  4TUY B;  5DCV A;  3RA5 A;  5LA6 B;  2RHO A;  4G4Z A;  1ZWZ A;  1N8R H;  5EZY A;  3E22 A;  2YXZ A;  5CA0 A;  1IPA A;  3VI6 A;  3VO8 A;  1IV4 A;  3LME A;  3D01 A;  3S0W A;  3C9T A;  3CXC F;  3OBW A;  1KC8 H;  3LYB A;  5IJ0 B;  1VQ7 F;  3LWR C;  1YGY A;  1JFF B;  4I4T A;  1M90 H;  1W2B F;  4BVR A;  1H47 A;  5LA6 A;  4BVQ A;  4FFB A;  3ESJ A;  3FD5 A;  4YJ3 A;  3WJQ A;  3ZOP A;  2RHH A;  3K0T A;  4BY9 D;  3J81 M;  1UFY A;  5HP7 A;  4G4X A;  5FJ4 C;  1VK3 A;  1KNK A;  3K14 A;  3KJK A;  4G4W A;  1NJI H;  1CLI A;  1JD1 A;  3CYP B;  5AVM A;  1VH8 A;  1QVG F;  4EI9 A;  5HY1 A;  5IJ0 A;  2HRY A;  3JAK B;  1JFF A;  1J7H A;  5GAN K;  2VAP A;  1H7M A;  1IV1 A;  2H8E A;  3CCL F;  2HS4 A;  1W5F A;  3QUW A;  3ZO8 A;  5FLX M;  3J80 M;  1W5A A;  3MQW A;  2Q1X A;  4LCK A;  1FNJ A;  5KMG B;  1CN7 A;  3IEQ A;  5CB4 B;  3FPI A;  1KQS F;  2BTO A;  4G4V A;  3OW2 F;  2L26 A;  3RYH B;  3JAL B;  4F6R B;  3JAK A;  3GHZ A;  1JY8 A;  2VGN A; 
#chains in the Genus database with same CATH homology
 2IAF A;  1YGY A;  3DDN A;  3DC2 A;  4RQO A;  2IQQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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