4RQOA

Crystal structure of l-serine dehydratase from legionella pneumophila
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
457
structure length
444
Chain Sequence
NISVFDLFSIGIGPSSSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDKNPPPYPFATATELLKLCKKHHLTIAELMLVNEKTWRSTAEIHKGILDIAKVMDDCINNGCKHDGVLPGGLNLKRRAPDLYRKLIFEQSDIMNHLNLYAMAVNEENAAGGRIVTAPTNGAAGIIPAVLKYCQQAHDRMSNEDIYTYFLTAAAIGILYKKGASISGAEVGCQGEVGVASSMAAAGLTAVLGGTIEQVENAAEIAMEHHLGMTCDPVLGLVQIPCIERNAMGAVKAVNATRMALIGDGQHQISLDKVIKTMKQTGMDMQSIYKETSMGGLAVNLPEC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Legionella pneumophila subsp. pneumophila str. thunder bay
publication title Structure of l-Serine Dehydratase from Legionella pneumophila: Novel Use of the C-Terminal Cysteine as an Intrinsic Competitive Inhibitor.
pubmed doi rcsb
molecule keywords L-serine dehydratase
total genus 139
structure length 444
sequence length 457
chains with identical sequence B
ec nomenclature ec 4.3.1.17: L-serine ammonia-lyase.
pdb deposition date 2014-11-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.90 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; D-3-phosphoglycerate dehydrogenase; domain 3 4rqoA01
4RQOA 2IAFA 3DC2A 3DDNA 1YGYA 2IQQA
chains in the Genus database with same CATH superfamily
3F0EA 3RYCB 5JVDA 2HX0A 1ONIA 2BTUA 1OFUA 4X20B 3S03A 4BT2A 5CA0B 3TD3A 5IYZB 3I55F 2H8CA 3CD6F 2YXZA 1RA4A 1DT9A 1X52A 2HP0A 1JD1A 4I50A 2RHJA 5JQGA 2OTMA 3KHNA 1W5AA 3HKBA 3M4SA 1OAPA 3E22B 3UT5B 4X1KA 5EZYB 3O85A 3CCRF 5ITZB 2UZHA 3V7QA 3NMUC 4X3MA 2ZF8A 4DRXB 5CB4B 5JH7B 5IJ9A 2OHWA 3VOAA 2DYYA 2LCAA 1COMA 1JN1A 2HQSC 5EIBD 1VQ5F 4BT5A 5J2TA 3S06A 5LYJA 2R6R1 3EORA 3HKDA 2RHOA 1H7MA 3CG6A 5LOVB 2GLZA 5LXTA 1K9MH 2OTLF 1JY8A 3V4DA 1W42A 3I7TA 4O4JA 5MN6A 3KJJA 2CVLA 5EAZA 3JVHA 2HS3A 3IKEA 2HS0A 2ALEA 4ERHA 4F6RB 4IIJB 4X1YA 3HKCA 2ZVZA 1VQKF 1X7OA 4B46A 3F0FA 5HP7A 5DCVA 5MN4A 4ZK7A 3RYIA 3WGLA 4TUYB 3LWRC 3CCLF 3OW2F 3ZOPA 4BVQA 3CCMF 1FFXA 3NK6A 5FNVA 3GTZA 3J81M 1FSZA 1QU9A 3F0DA 4IHJA 1X7PA 3NVIB 1CN7A 3HAXD 1TUBB 5CA1A 1R1MA 2W8BC 4C8GA 3NK7A 3CMEF 5J2UA 4O4HB 4LNUA 4O2AB 1KD1H 3CPQA 1JFFB 4XCQA 4I55B 4O2BB 3VYTC 3LMEA 3LDTA 1VQ4F 2AIFA 1YIJF 1U43A 4RQOA 4TV8A 5JCOA 4ZOLA 4ZHWA 3L7QA 3GHZA 3N2KA 4G4XA 5EB1B 3OBYA 1VQOF 3ERNA 1SA0A 2F9ZC 4DXDA 3WGJA 3QHDA 3FD6A 3LWQC 2UYNA 3JAWA 1QVGF 4X3LA 1IV4A 3WJQA 1RLUA 2YYEA 5GONA 3HKEA 3VI6A 3CXCF 2Z1TA 2VAWA 2WALA 1Q82H 3IEWA 3P4EA 2Z1UA 2ZODA 1S72F 3VCZA 3ELCA 5KMGA 3NVKE 3M1XA 4NQ3A 4E6EA 2GZLA 2HP3A 4G88A 5GAPK 3ESJA 4B5CA 3RA6A 3IEQA 3MQWA 1PF5A 2H6LA 4HNAB 1Q86H 1QAHA 1X25A 4C8IA 5BMVB 1W57A 2QI2A 3SIUA 3VYUC 4EI8A 2I6DA 3ZP7A 2KG4A 3RYCA 2Z01A 1KQSF 2GVIA 5LA6A 4X20A 3VO8A 3ZP4A 5CA0A 5IYZA 3RYFB 5EO3A 2QTPA 4M8IA 5EIBC 5HY4A 4G4YA 1GZ0A 3KIZA 1IV2A 3D54A 4ZI7B 3BYQA 5B8FA 5IJ0B 4U3JB 4I4TB 4YJ3B 4YJ2B 1FNJA 4BT4A 3CPWF 4EB6B 3CCEF 3E22A 3UT5A 4ZHYB 5EZYA 5MN5A 1YJ9F 1CK2A 5ITZA 2LBTA 2V9YA 2OTJF 5CB4A 5JH7A 3S02A 2N48A 3CC2F 3V3TA 5LP6C 3P10A 3SIVA 1JJ2F 3C9UA 4X1IB 3JALB 3G71F 4B45A 5HY2A 2DT4A 1K8AH 3I3FA 3DC2A 4BT6A 1Z5VA 3KJKA 5LOVA 3FFMA 3Q8HA 1J7HA 1IV1A 3CC4F 2CSLA 4G4WA 1K73H 4ZHQB 5C8YA 3F0GA 1T0KB 3JARB 2HVYD 1FNKA 4F6RA 3JAKA 3WXMB 3AGKA 1GO1A 1VK3A 3FPIA 3IMPA 3HJWC 5JCOC 4C4WC 4BT3A 3CCUF 1VQLF 3HKDB 4TUYA 1W2BF 1H48A 3CCQF 4BVRA 3CCVF 3U0OA 5EYPA 3TD4A 1KNKA 2VGNA 3C9SA 1TUBA 1E7KA 2RHLA 1XBIA 1QVFF 2K1SA 3K12A 5G4UC 1TVKB 3C8LA 5KX5B 2L26A 3JASB 3RYHB 4O4HA 4O2AA 1XRGA 3OONA 1JFFA 1NMUB 3M84A 4I55A 4O2BA 3JCMM 3FBAA 2R751 4C82A 1W5FA 3R0PA 4O4LB 5LP6B 3N4ZA 2HRUA 3MCQA 4IHJB 3S0YA 4ZHVA 3E1YA 4BT7A 2MQEA 3WGMA 2UYPA 1YI2F 5J2UB 5FJ4C 2PMPA 1KNJA 3WGKA 2UYJA 1Q8RA 1Z5WA 3TD5A 4WBNB 3VMFB 2AIZP 5A2QM 2HRYA 3N2KB 2ZAUA 4G4ZA 2BTQB 1U40A 3JATB 3N4YA 2UYNB 4HNAA 3ON1A 3RE3A 2CHTA 1U3LA 3CCSF 4FFBB 5GIOC 5BMVA 4TV9B 3J80M 2AMTA 1H47A 3N2GB 4TZZA 2VAPA 1YHQF 1W41A 1RQ7A 1RQ2A 3RA5A 1GX1A 1VQNF 2IG8A 3LWOC 3RYFA 1N8RH 3VOBA 2FC3A 3PLAC 2Z1FA 4B62A 2EWCA 4G4VA 1W5EA 4PWTA 1M90H 3PAFA 5IT9M 5AVMA 2IQQA 5IJ0A 4BVTA 2KGWA 4EI7A 5G4VC 4U3JA 4I4TA 4YJ2A 3CC7F 4O4IB 3QUWA 1UI9A 3IR9A 3ZO8A 4EB6A 1VH8A 1W55A 3T80A 5JVDB 3VYSC 5LA6B 3LFOA 1CLIA 3C9RA 4DRXA 3B6NA 1VQ8F 5HY0A 4RHAA 1PXWA 4BY9D 1VQMF 2HP0B 4X1IA 3F6MA 3JALA 3C9TA 4I50B 3K14A 1VQ6F 5EB0A 1DBFA 3QTYA 3HTNA 5JQGB 2CWJA 3HKBB 3IKFA 1ODEA 3LWPC 4X1KB 2B33A 5GANK 4ZHQA 4NUTA 2ZVYA 3CYQA 3JARA 3WJPA 2RHHA 4IIJA 5HXUA 5IJ9B 2VAMA 3I56F 3CB2A 1XHOA 1YGYA 3FD5A 5J2TB 5LYJB 1VQ9F 3CMAF 1W59A 3K2XA 3LWVC 1IPAA 1YITF 1NJIH 5LXTB 3WPWA 3MCAB 4O4JB 2ZOVA 3WPXA 1QD9A 5C8YB 1VQPF 1TVKA 5KX5A 1IV3A 2QEXF 3JASA 1YQNA 4X1YB 3JAKB 3HKCB 3RYHA 2QA4F 2LBWA 1ZWZA 1SZQA 2IAFA 1VQ7F 3HWUA 4LCKA 3OBWA 3G6EF 1SDSA 1W5BA 1YJWF 3RYIB 4O4LA 5LP6A 1FFXB 5FNVB 2PHNA 2Q1YA 5EYPB 2I6RA 3E20B 5CA1B 4EI9A 3DDNA 3GYQA 3JAMM 3G4SF 2NMUA 3VTIC 4BVSA 2OZBA 3VIUA 1T0AA 2VGMA 2Z1EA 2CW4A 4LNUB 3P0ZA 1GO0A 3MBMA 4WBNA 1U3PA 1W40A 4BW0B 2KTUA 5HWEA 2Q1XA 2P6YA 2UYKA 1VHAA 3K0TA 5HP8A 5HY1A 2LBXA 3MDOA 4TV8B 1YJNF 4KWEA 4ZOLB 5EWRA 5FLXM 1SA0B 1VQVA 3JATA 3JAWB 1KC8H 3V7EA 3S0WA 3WJRA 4FFBA 2CZWA 3KE1A 4TV9A 5HXZA 5GONB 3HKEB 4C81A 3N2GA 3J7AR 2KTVA 3D00A 1W581 3S0HA 2FGYA 2CHSA 1M1KH 1UFYA 1Q7YH 4C8EA 2JNBA 3WGNA 5KMGB 2RB9A 2H8EA 1XV2A 3D01A 3CCJF 2VXYA 3CYPB 4NWOB 4U39A 4ZI7A 1W3EX 5GIPC 4R40B 1NQ3A 2BO1A 1Q81H 2BTOA 3LYBA 1RLGA 4YJ3A 4O4IA 2G9IA 5GINC 2HS4A
chains in the Genus database with same CATH topology
4RQOA 2IAFA 3DC2A 3DDNA 1YGYA 2IQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RQO A;  2IAF A;  3DC2 A;  3DDN A;  1YGY A;  2IQQ A; 
#chains in the Genus database with same CATH topology
 3F0E A;  3RYC B;  5JVD A;  2HX0 A;  1ONI A;  2BTU A;  1OFU A;  4X20 B;  3S03 A;  4BT2 A;  5CA0 B;  3TD3 A;  5IYZ B;  3I55 F;  2H8C A;  3CD6 F;  2YXZ A;  1RA4 A;  1DT9 A;  1X52 A;  2HP0 A;  1JD1 A;  4I50 A;  2RHJ A;  5JQG A;  2OTM A;  3KHN A;  1W5A A;  3HKB A;  3M4S A;  1OAP A;  3E22 B;  3UT5 B;  4X1K A;  5EZY B;  3O85 A;  3CCR F;  5ITZ B;  2UZH A;  3V7Q A;  3NMU C;  4X3M A;  2ZF8 A;  4DRX B;  5CB4 B;  5JH7 B;  5IJ9 A;  2OHW A;  3VOA A;  2DYY A;  2LCA A;  1COM A;  1JN1 A;  2HQS C;  5EIB D;  1VQ5 F;  4BT5 A;  5J2T A;  3S06 A;  5LYJ A;  2R6R 1;  3EOR A;  3HKD A;  2RHO A;  1H7M A;  3CG6 A;  5LOV B;  2GLZ A;  5LXT A;  1K9M H;  2OTL F;  1JY8 A;  3V4D A;  1W42 A;  3I7T A;  4O4J A;  5MN6 A;  3KJJ A;  2CVL A;  5EAZ A;  3JVH A;  2HS3 A;  3IKE A;  2HS0 A;  2ALE A;  4ERH A;  4F6R B;  4IIJ B;  4X1Y A;  3HKC A;  2ZVZ A;  1VQK F;  1X7O A;  4B46 A;  3F0F A;  5HP7 A;  5DCV A;  5MN4 A;  4ZK7 A;  3RYI A;  3WGL A;  4TUY B;  3LWR C;  3CCL F;  3OW2 F;  3ZOP A;  4BVQ A;  3CCM F;  1FFX A;  3NK6 A;  5FNV A;  3GTZ A;  3J81 M;  1FSZ A;  1QU9 A;  3F0D A;  4IHJ A;  1X7P A;  3NVI B;  1CN7 A;  3HAX D;  1TUB B;  5CA1 A;  1R1M A;  2W8B C;  4C8G A;  3NK7 A;  3CME F;  5J2U A;  4O4H B;  4LNU A;  4O2A B;  1KD1 H;  3CPQ A;  1JFF B;  4XCQ A;  4I55 B;  4O2B B;  3VYT C;  3LME A;  3LDT A;  1VQ4 F;  2AIF A;  1YIJ F;  1U43 A;  4RQO A;  4TV8 A;  5JCO A;  4ZOL A;  4ZHW A;  3L7Q A;  3GHZ A;  3N2K A;  4G4X A;  5EB1 B;  3OBY A;  1VQO F;  3ERN A;  1SA0 A;  2F9Z C;  4DXD A;  3WGJ A;  3QHD A;  3FD6 A;  3LWQ C;  2UYN A;  3JAW A;  1QVG F;  4X3L A;  1IV4 A;  3WJQ A;  1RLU A;  2YYE A;  5GON A;  3HKE A;  3VI6 A;  3CXC F;  2Z1T A;  2VAW A;  2WAL A;  1Q82 H;  3IEW A;  3P4E A;  2Z1U A;  2ZOD A;  1S72 F;  3VCZ A;  3ELC A;  5KMG A;  3NVK E;  3M1X A;  4NQ3 A;  4E6E A;  2GZL A;  2HP3 A;  4G88 A;  5GAP K;  3ESJ A;  4B5C A;  3RA6 A;  3IEQ A;  3MQW A;  1PF5 A;  2H6L A;  4HNA B;  1Q86 H;  1QAH A;  1X25 A;  4C8I A;  5BMV B;  1W57 A;  2QI2 A;  3SIU A;  3VYU C;  4EI8 A;  2I6D A;  3ZP7 A;  2KG4 A;  3RYC A;  2Z01 A;  1KQS F;  2GVI A;  5LA6 A;  4X20 A;  3VO8 A;  3ZP4 A;  5CA0 A;  5IYZ A;  3RYF B;  5EO3 A;  2QTP A;  4M8I A;  5EIB C;  5HY4 A;  4G4Y A;  1GZ0 A;  3KIZ A;  1IV2 A;  3D54 A;  4ZI7 B;  3BYQ A;  5B8F A;  5IJ0 B;  4U3J B;  4I4T B;  4YJ3 B;  4YJ2 B;  1FNJ A;  4BT4 A;  3CPW F;  4EB6 B;  3CCE F;  3E22 A;  3UT5 A;  4ZHY B;  5EZY A;  5MN5 A;  1YJ9 F;  1CK2 A;  5ITZ A;  2LBT A;  2V9Y A;  2OTJ F;  5CB4 A;  5JH7 A;  3S02 A;  2N48 A;  3CC2 F;  3V3T A;  5LP6 C;  3P10 A;  3SIV A;  1JJ2 F;  3C9U A;  4X1I B;  3JAL B;  3G71 F;  4B45 A;  5HY2 A;  2DT4 A;  1K8A H;  3I3F A;  3DC2 A;  4BT6 A;  1Z5V A;  3KJK A;  5LOV A;  3FFM A;  3Q8H A;  1J7H A;  1IV1 A;  3CC4 F;  2CSL A;  4G4W A;  1K73 H;  4ZHQ B;  5C8Y A;  3F0G A;  1T0K B;  3JAR B;  2HVY D;  1FNK A;  4F6R A;  3JAK A;  3WXM B;  3AGK A;  1GO1 A;  1VK3 A;  3FPI A;  3IMP A;  3HJW C;  5JCO C;  4C4W C;  4BT3 A;  3CCU F;  1VQL F;  3HKD B;  4TUY A;  1W2B F;  1H48 A;  3CCQ F;  4BVR A;  3CCV F;  3U0O A;  5EYP A;  3TD4 A;  1KNK A;  2VGN A;  3C9S A;  1TUB A;  1E7K A;  2RHL A;  1XBI A;  1QVF F;  2K1S A;  3K12 A;  5G4U C;  1TVK B;  3C8L A;  5KX5 B;  2L26 A;  3JAS B;  3RYH B;  4O4H A;  4O2A A;  1XRG A;  3OON A;  1JFF A;  1NMU B;  3M84 A;  4I55 A;  4O2B A;  3JCM M;  3FBA A;  2R75 1;  4C82 A;  1W5F A;  3R0P A;  4O4L B;  5LP6 B;  3N4Z A;  2HRU A;  3MCQ A;  4IHJ B;  3S0Y A;  4ZHV A;  3E1Y A;  4BT7 A;  2MQE A;  3WGM A;  2UYP A;  1YI2 F;  5J2U B;  5FJ4 C;  2PMP A;  1KNJ A;  3WGK A;  2UYJ A;  1Q8R A;  1Z5W A;  3TD5 A;  4WBN B;  3VMF B;  2AIZ P;  5A2Q M;  2HRY A;  3N2K B;  2ZAU A;  4G4Z A;  2BTQ B;  1U40 A;  3JAT B;  3N4Y A;  2UYN B;  4HNA A;  3ON1 A;  3RE3 A;  2CHT A;  1U3L A;  3CCS F;  4FFB B;  5GIO C;  5BMV A;  4TV9 B;  3J80 M;  2AMT A;  1H47 A;  3N2G B;  4TZZ A;  2VAP A;  1YHQ F;  1W41 A;  1RQ7 A;  1RQ2 A;  3RA5 A;  1GX1 A;  1VQN F;  2IG8 A;  3LWO C;  3RYF A;  1N8R H;  3VOB A;  2FC3 A;  3PLA C;  2Z1F A;  4B62 A;  2EWC A;  4G4V A;  1W5E A;  4PWT A;  1M90 H;  3PAF A;  5IT9 M;  5AVM A;  2IQQ A;  5IJ0 A;  4BVT A;  2KGW A;  4EI7 A;  5G4V C;  4U3J A;  4I4T A;  4YJ2 A;  3CC7 F;  4O4I B;  3QUW A;  1UI9 A;  3IR9 A;  3ZO8 A;  4EB6 A;  1VH8 A;  1W55 A;  3T80 A;  5JVD B;  3VYS C;  5LA6 B;  3LFO A;  1CLI A;  3C9R A;  4DRX A;  3B6N A;  1VQ8 F;  5HY0 A;  4RHA A;  1PXW A;  4BY9 D;  1VQM F;  2HP0 B;  4X1I A;  3F6M A;  3JAL A;  3C9T A;  4I50 B;  3K14 A;  1VQ6 F;  5EB0 A;  1DBF A;  3QTY A;  3HTN A;  5JQG B;  2CWJ A;  3HKB B;  3IKF A;  1ODE A;  3LWP C;  4X1K B;  2B33 A;  5GAN K;  4ZHQ A;  4NUT A;  2ZVY A;  3CYQ A;  3JAR A;  3WJP A;  2RHH A;  4IIJ A;  5HXU A;  5IJ9 B;  2VAM A;  3I56 F;  3CB2 A;  1XHO A;  1YGY A;  3FD5 A;  5J2T B;  5LYJ B;  1VQ9 F;  3CMA F;  1W59 A;  3K2X A;  3LWV C;  1IPA A;  1YIT F;  1NJI H;  5LXT B;  3WPW A;  3MCA B;  4O4J B;  2ZOV A;  3WPX A;  1QD9 A;  5C8Y B;  1VQP F;  1TVK A;  5KX5 A;  1IV3 A;  2QEX F;  3JAS A;  1YQN A;  4X1Y B;  3JAK B;  3HKC B;  3RYH A;  2QA4 F;  2LBW A;  1ZWZ A;  1SZQ A;  2IAF A;  1VQ7 F;  3HWU A;  4LCK A;  3OBW A;  3G6E F;  1SDS A;  1W5B A;  1YJW F;  3RYI B;  4O4L A;  5LP6 A;  1FFX B;  5FNV B;  2PHN A;  2Q1Y A;  5EYP B;  2I6R A;  3E20 B;  5CA1 B;  4EI9 A;  3DDN A;  3GYQ A;  3JAM M;  3G4S F;  2NMU A;  3VTI C;  4BVS A;  2OZB A;  3VIU A;  1T0A A;  2VGM A;  2Z1E A;  2CW4 A;  4LNU B;  3P0Z A;  1GO0 A;  3MBM A;  4WBN A;  1U3P A;  1W40 A;  4BW0 B;  2KTU A;  5HWE A;  2Q1X A;  2P6Y A;  2UYK A;  1VHA A;  3K0T A;  5HP8 A;  5HY1 A;  2LBX A;  3MDO A;  4TV8 B;  1YJN F;  4KWE A;  4ZOL B;  5EWR A;  5FLX M;  1SA0 B;  1VQV A;  3JAT A;  3JAW B;  1KC8 H;  3V7E A;  3S0W A;  3WJR A;  4FFB A;  2CZW A;  3KE1 A;  4TV9 A;  5HXZ A;  5GON B;  3HKE B;  4C81 A;  3N2G A;  3J7A R;  2KTV A;  3D00 A;  1W58 1;  3S0H A;  2FGY A;  2CHS A;  1M1K H;  1UFY A;  1Q7Y H;  4C8E A;  2JNB A;  3WGN A;  5KMG B;  2RB9 A;  2H8E A;  1XV2 A;  3D01 A;  3CCJ F;  2VXY A;  3CYP B;  4NWO B;  4U39 A;  4ZI7 A;  1W3E X;  5GIP C;  4R40 B;  1NQ3 A;  2BO1 A;  1Q81 H;  2BTO A;  3LYB A;  1RLG A;  4YJ3 A;  4O4I A;  2G9I A;  5GIN C;  2HS4 A; 
#chains in the Genus database with same CATH homology
 4RQO A;  2IAF A;  3DC2 A;  3DDN A;  1YGY A;  2IQQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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