The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
34
|
sequence length |
118
|
structure length |
118
|
Chain Sequence |
YVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38
pubmed doi rcsb |
| molecule tags |
Rna binding protein/rna
|
| source organism |
Pyrococcus horikoshii (strain atcc 700860 / dsm 12428 / jcm 9974 / nbrc 100139 /
|
| molecule keywords |
50S ribosomal protein L7Ae
|
| total genus |
34
|
| structure length |
118
|
| sequence length |
118
|
| chains with identical sequence |
C
|
| ec nomenclature | |
| pdb deposition date | 2015-08-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01248 | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; |
#chains in the Genus database with same CATH superfamily 1YHQ F; 3V7E A; 5FJ4 C; 1W42 A; 2KTV A; 4BW0 B; 3CG6 A; 3CCM F; 2CZW A; 3LWP C; 4C4W C; 2AIF A; 1YJW F; 2I6D A; 3CXC F; 3CC4 F; 1VQ5 F; 1GO1 A; 3GYQ A; 5GIN C; 3MCA B; 1K8A H; 2QEX F; 1Q7Y H; 1X52 A; 3JCM M; 3IR9 A; 1VQ6 F; 2FC3 A; 2HVY D; 2KG4 A; 3O85 A; 1N8R H; 2OTJ F; 1X7O A; 3NMU C; 3LWV C; 2WAL A; 3JAM M; 1X7P A; 5G4U C; 3CPW F; 1CK2 A; 3CC2 F; 1S72 F; 4NUT A; 1KQS F; 1QVF F; 3OBW A; 3ON1 A; 3NK7 A; 5EWR A; 3WXM B; 1M90 H; 1VQK F; 2OTL F; 3OBY A; 1VQP F; 1VQL F; 1E7K A; 5GIO C; 2OHW A; 3PLA C; 3PAF A; 1KD1 H; 1W3E X; 2JNB A; 1KC8 H; 4X3L A; 2LBW A; 3I55 F; 3VMF B; 3N4Y A; 1YIT F; 3VI6 A; 3SIU A; 3G71 F; 1W2B F; 2BO1 A; 1IPA A; 3LFO A; 1VQ7 F; 1XBI A; 1YJN F; 1M1K H; 2QA4 F; 3CPQ A; 3HAX D; 1QVG F; 1VQ9 F; 3FFM A; 3SIV A; 1SDS A; 5EO3 A; 3LWQ C; 5DCV A; 3CCR F; 3CC7 F; 3HJW C; 1DT9 A; 2KTU A; 3NK6 A; 1Q82 H; 1NJI H; 1RLG A; 5GIP C; 4TZZ A; 3G6E F; 3NVK E; 2ALE A; 1YI2 F; 2VGN A; 3J80 M; 5GAN K; 3I56 F; 1GZ0 A; 1ZWZ A; 2OZB A; 1W40 A; 5A2Q M; 1H7M A; 1W41 A; 3AGK A; 3J81 M; 3N4Z A; 3CCE F; 3OW2 F; 1YIJ F; 3E1Y A; 1T0K B; 4BY9 D; 5G4V C; 1VQ4 F; 3CCJ F; 3RA5 A; 2VGM A; 3CCQ F; 5IT9 M; 4X3M A; 3V7Q A; 3NVI B; 1PXW A; 1VQM F; 3LWR C; 1K9M H; 3CCL F; 1VQN F; 3G4S F; 3J7A R; 1K73 H; 3CME F; 3E20 B; 4LCK A; 3CMA F; 1RA4 A; 1JJ2 F; 1CN7 A; 1NMU B; 1YJ9 F; 1VQO F; 3CD6 F; 3CCS F; 3CCV F; 1VQ8 F; 3RA6 A; 3LWO C; 3CCU F; 1Q81 H; 1Q86 H; 5GAP K; 2LBX A; 2QI2 A; 1GO0 A; 5FLX M; #chains in the Genus database with same CATH topology 2H6L A; 2DYY A; 2F9Z C; 4O2B B; 5J2T B; 3RYH B; 1FFX A; 3ELC A; 4ZOL B; 3TD5 A; 3CC4 F; 3MQW A; 5ITZ B; 3TD4 A; 3QTY A; 5JVD B; 4DXD A; 2HS3 A; 2CHT A; 3IR9 A; 4E6E A; 4LNU B; 5KMG B; 2FC3 A; 3ESJ A; 4EB6 B; 1UFY A; 3MCQ A; 4X1Y B; 4O2B A; 5J2T A; 3R0P A; 2OTJ F; 1X7O A; 2Z1U A; 3M1X A; 3RYH A; 2I6R A; 1W5B A; 3LYB A; 3CB2 A; 4ZOL A; 4BVQ A; 4BT7 A; 5CA1 B; 1X25 A; 1KQS F; 2LBT A; 1NQ3 A; 5JVD A; 2UYJ A; 4O2A B; 3OON A; 1PF5 A; 3S06 A; 4LNU A; 1VQK F; 5KMG A; 3OBY A; 1VQP F; 1Z5V A; 5LOV A; 5KX5 B; 4EB6 A; 2R75 1; 2L26 A; 4X1Y A; 4O4H B; 3PLA C; 1KD1 H; 3V4D A; 1OAP A; 1W57 A; 2BTQ B; 1FNJ A; 2PMP A; 1W59 A; 3B6N A; 4KWE A; 4X3L A; 3I55 F; 3LDT A; 3UT5 B; 3G71 F; 5AVM A; 2BO1 A; 1W2B F; 3MDO A; 4U3J B; 3LFO A; 3GHZ A; 4RHA A; 1XBI A; 2B33 A; 1T0A A; 3CPQ A; 5KX5 A; 4B46 A; 5HP8 A; 5IJ9 B; 3HAX D; 4O4H A; 2IQQ A; 5DCV A; 1DT9 A; 2KTU A; 4ZK7 A; 4EI8 A; 1YI2 F; 3UT5 A; 2VGN A; 3D01 A; 4ZHY B; 4U3J A; 3LME A; 3KJK A; 3J81 M; 3N4Z A; 2CW4 A; 1W5A A; 1T0K B; 4F6R B; 5G4V C; 2MQE A; 3Q8H A; 5IJ9 A; 2VGM A; 3CCQ F; 1JN1 A; 3IKF A; 3F0D A; 3S02 A; 4NQ3 A; 5BMV B; 3CME F; 2FGY A; 3JVH A; 3VO8 A; 3CMA F; 1RA4 A; 3KJJ A; 5MN5 A; 2YYE A; 4BT6 A; 2Z01 A; 3CCV F; 4F6R A; 3LWO C; 1VQ8 F; 3HWU A; 5C8Y B; 4NWO B; 2Q1Y A; 5BMV A; 3CG6 A; 2HRU A; 3P0Z A; 3WGJ A; 2AIF A; 3IEW A; 4C82 A; 2HS0 A; 2I6D A; 3GYQ A; 1U40 A; 1JD1 A; 3IMP A; 4B62 A; 2H8E A; 2RHL A; 5LP6 C; 4B45 A; 3S0Y A; 3GTZ A; 3JCM M; 5C8Y A; 1VQ6 F; 5B8F A; 3K0T A; 2Z1T A; 3FD6 A; 3FPI A; 4I50 B; 2HVY D; 3O85 A; 4I4T B; 5MN6 A; 3NMU C; 3N2K A; 2HP3 A; 5G4U C; 1CK2 A; 2Z1E A; 1H48 A; 4TUY B; 2H8C A; 2RHJ A; 3K14 A; 5FNV B; 3FBA A; 3ON1 A; 4DRX B; 5LYJ B; 2RB9 A; 2GLZ A; 2HRY A; 3C9T A; 3E22 B; 5EWR A; 3WXM B; 3RYC B; 1E7K A; 3VOB A; 4I50 A; 5GIO C; 2OHW A; 1JFF A; 4I4T A; 3HKD B; 2YXZ A; 3IEQ A; 4IHJ B; 2JNB A; 2HX0 A; 4TUY A; 1TVK B; 3C9S A; 5HY1 A; 5HXZ A; 3VMF B; 4EI7 A; 4DRX A; 3JAK B; 5LYJ A; 3E22 A; 3TD3 A; 3I3F A; 3RYC A; 1R1M A; 1COM A; 5ITZ A; 5JQG B; 2Q1X A; 1QVG F; 2ZAU A; 1VQ9 F; 3HKD A; 3FFM A; 5EIB D; 3SIV A; 1JY8 A; 4IHJ A; 3CCR F; 1Q82 H; 3KHN A; 2VAM A; 2IAF A; 1ZWZ A; 3VOA A; 2OZB A; 3JAK A; 5A2Q M; 1H7M A; 1KNJ A; 3JAR B; 5CA1 A; 5CA0 B; 5JQG A; 3V3T A; 3VCZ A; 4X1I B; 3ZO8 A; 4R40 B; 1VQ4 F; 4O2A A; 3T80 A; 5IT9 M; 3L7Q A; 3LWR C; 1VQN F; 3CCL F; 3JAW B; 2ZVZ A; 4X20 B; 3WPX A; 4BVS A; 3IKE A; 5CB4 B; 1K73 H; 4C8E A; 2QTP A; 3S0H A; 2VAP A; 5IYZ B; 3FD5 A; 2K1S A; 2BTU A; 3JAR A; 2VXY A; 1RLU A; 5CA0 A; 4X1I A; 1Q86 H; 1IV3 A; 4O4J B; 4TV8 B; 2LBX A; 3F0E A; 2QI2 A; 1W5E A; 3HTN A; 1JJ2 F; 1GO0 A; 3JAW A; 5FJ4 C; 1W42 A; 2KTV A; 4BW0 B; 4X20 A; 2UYN B; 4O4L B; 1W58 1; 4X1K B; 4G4V A; 3RE3 A; 1CLI A; 3LWP C; 5IYZ A; 4C4W C; 5GON B; 3F6M A; 4U39 A; 4C81 A; 5GIN C; 3VYS C; 2RHO A; 2QEX F; 4O4J A; 1Q7Y H; 5LA6 B; 2HS4 A; 3MBM A; 4BT5 A; 4C8G A; 4ZI7 B; 1RQ7 A; 1VQV A; 1KNK A; 2UYN A; 4O4L A; 5JCO A; 3WGM A; 2KG4 A; 4X1K A; 2ZVY A; 3P4E A; 5MN4 A; 2AIZ P; 3WGL A; 5HY0 A; 1OFU A; 3CYP B; 5GON A; 3CPW F; 1VHA A; 1YQN A; 4NUT A; 1IV2 A; 2ZOV A; 3F0F A; 1QVF F; 4G4X A; 3OBW A; 1FNK A; 5LA6 A; 4ZI7 A; 2UYP A; 3NK7 A; 2NMU A; 1RQ2 A; 1M90 H; 1VQL F; 3RYF B; 3VIU A; 4PWT A; 4EI9 A; 2IG8 A; 3HKE B; 2Z1F A; 3PAF A; 1KC8 H; 4XCQ A; 2EWC A; 1GX1 A; 3N4Y A; 1YIT F; 1Z5W A; 3SIU A; 4ZHW A; 1IPA A; 1VQ7 F; 2OTM A; 1YJN F; 5JH7 B; 3I7T A; 1M1K H; 2QA4 F; 5EAZ A; 5EYP B; 3RYF A; 1QU9 A; 3HKC B; 3WGK A; 3D54 A; 2R6R 1; 4G4Y A; 3HKE A; 4IIJ B; 5EO3 A; 5EZY B; 3CC7 F; 3HJW C; 1NJI H; 4WBN B; 3HKB B; 5GIP C; 4TZZ A; 4BVR A; 3NVK E; 2ALE A; 5HP7 A; 3J80 M; 5GAN K; 2LCA A; 1GZ0 A; 4TV9 B; 3I56 F; 5LP6 B; 2PHN A; 1W40 A; 1W41 A; 3AGK A; 3F0G A; 3CCE F; 5JH7 A; 5EYP A; 1VK3 A; 5EIB C; 3HKC A; 5FNV A; 3CCJ F; 3ERN A; 3V7Q A; 3NVI B; 1PXW A; 1VQM F; 4IIJ A; 5EZY A; 1K9M H; 4FFB B; 2ZF8 A; 1FSZ A; 3S0W A; 3G4S F; 4WBN A; 3HKB A; 3E20 B; 3WPW A; 3ZP4 A; 1DBF A; 4LCK A; 2RHH A; 4TV9 A; 5LP6 A; 1CN7 A; 3M4S A; 5J2U B; 1TVK A; 3P10 A; 1VQO F; 4HNA B; 1H47 A; 5LOV B; 1U3L A; 3JAT B; 5GAP K; 2KGW A; 3CYQ A; 4FFB A; 1YHQ F; 3V7E A; 3CCM F; 3JAS B; 1J7H A; 1YGY A; 1IV1 A; 2W8B C; 5EB1 B; 2CZW A; 2GVI A; 3QHD A; 1YJW F; 3U0O A; 3CXC F; 5J2U A; 1VQ5 F; 1GO1 A; 3JAL B; 3MCA B; 4C8I A; 1U3P A; 1K8A H; 4HNA A; 4G4W A; 3JAT A; 2N48 A; 3QUW A; 3WJR A; 4RQO A; 1X52 A; 5HY4 A; 3RYI B; 5HWE A; 3K2X A; 2G9I A; 5JCO C; 3JAS A; 2VAW A; 4ZHV A; 1N8R H; 3DDN A; 3ZP7 A; 3LWV C; 2WAL A; 3JAM M; 1X7P A; 5HY2 A; 3CC2 F; 4G4Z A; 4BT3 A; 5CB4 A; 1S72 F; 3JAL A; 2CWJ A; 2ZOD A; 1TUB B; 1W55 A; 2UYK A; 3WJP A; 3RYI A; 4I55 B; 2OTL F; 1XV2 A; 4B5C A; 1XRG A; 2CSL A; 4TV8 A; 3BYQ A; 1W3E X; 4O4I B; 2LBW A; 5IJ0 B; 3VYT C; 2CVL A; 3VI6 A; 1TUB A; 1U43 A; 3VYU C; 4I55 A; 3EOR A; 3C9U A; 2DT4 A; 2V9Y A; 1UI9 A; 4ZHQ B; 3D00 A; 4YJ2 B; 1QD9 A; 1SDS A; 3LWQ C; 3NK6 A; 4O4I A; 1RLG A; 2UZH A; 1Q8R A; 5LXT B; 3G6E F; 3N2G B; 5IJ0 A; 1XHO A; 3K12 A; 5EB0 A; 1SZQ A; 5HXU A; 1W5F A; 1ONI A; 3WJQ A; 1ODE A; 1QAH A; 1YIJ F; 2HQS C; 3OW2 F; 2HP0 B; 3E1Y A; 4ZHQ A; 3C9R A; 4YJ2 A; 4BY9 D; 2CHS A; 3RA5 A; 3S03 A; 4G88 A; 4YJ3 B; 4X3M A; 3VTI C; 3N2K B; 2GZL A; 3DC2 A; 1SA0 B; 1IV4 A; 3J7A R; 2BTO A; 1VH8 A; 5LXT A; 3N2G A; 3ZOP A; 2P6Y A; 4M8I A; 4BVT A; 1FFX B; 3KIZ A; 1NMU B; 3C8L A; 1YJ9 F; 3KE1 A; 2HP0 A; 3CD6 F; 3CCS F; 4ERH A; 3RA6 A; 3CCU F; 1Q81 H; 2AMT A; 1JFF B; 4BT2 A; 3M84 A; 3WGN A; 4YJ3 A; 4BT4 A; 1SA0 A; 5FLX M; #chains in the Genus database with same CATH homology 1YHQ F; 3V7E A; 5FJ4 C; 1W42 A; 2KTV A; 4BW0 B; 3CG6 A; 3CCM F; 2F9Z C; 2CZW A; 3LWP C; 4C4W C; 2AIF A; 1YJW F; 2I6D A; 3CXC F; 3CC4 F; 1VQ5 F; 1GO1 A; 3GYQ A; 5GIN C; 3MCA B; 1K8A H; 2QEX F; 1Q7Y H; 5HY4 A; 1X52 A; 3JCM M; 3IR9 A; 5HWE A; 1VQ6 F; 2FC3 A; 2HVY D; 2KG4 A; 3O85 A; 1N8R H; 2OTJ F; 1X7O A; 5HY0 A; 3NMU C; 3LWV C; 2WAL A; 3JAM M; 1X7P A; 5HY2 A; 3CPW F; 1CK2 A; 5G4U C; 3CC2 F; 4BVQ A; 1S72 F; 4NUT A; 1KQS F; 1QVF F; 3OBW A; 3ON1 A; 2GLZ A; 3NK7 A; 5EWR A; 3WXM B; 1M90 H; 1VQK F; 2OTL F; 3OBY A; 1VQP F; 1VQL F; 1E7K A; 5GIO C; 2OHW A; 4EI9 A; 3PLA C; 3PAF A; 1KD1 H; 1W3E X; 2JNB A; 1KC8 H; 4XCQ A; 4X3L A; 2LBW A; 5HXZ A; 5HY1 A; 3VMF B; 4EI7 A; 3I55 F; 3N4Y A; 1YIT F; 3VI6 A; 3SIU A; 3G71 F; 1W2B F; 2BO1 A; 1IPA A; 3LFO A; 1VQ7 F; 1XBI A; 1YJN F; 1M1K H; 2QA4 F; 3CPQ A; 3D00 A; 3HAX D; 1QVG F; 1VQ9 F; 3FFM A; 3SIV A; 1SDS A; 5EO3 A; 3LWQ C; 5DCV A; 3CCR F; 3CC7 F; 3HJW C; 1DT9 A; 2KTU A; 3NK6 A; 1Q82 H; 1NJI H; 1RLG A; 4EI8 A; 5GIP C; 4BVR A; 4TZZ A; 3G6E F; 3NVK E; 2ALE A; 1YI2 F; 2VGN A; 5HXU A; 3J80 M; 5GAN K; 3I56 F; 1GZ0 A; 1ZWZ A; 2OZB A; 1W40 A; 5A2Q M; 1H7M A; 1W41 A; 3AGK A; 3J81 M; 3N4Z A; 3CCE F; 3OW2 F; 1YIJ F; 3V3T A; 3E1Y A; 1T0K B; 4BY9 D; 5G4V C; 1VQ4 F; 3CCJ F; 3RA5 A; 2VGM A; 3CCQ F; 5IT9 M; 4X3M A; 3V7Q A; 3NVI B; 1PXW A; 1VQM F; 3LWR C; 1K9M H; 3CCL F; 1VQN F; 3G4S F; 4NQ3 A; 3J7A R; 1K73 H; 3CME F; 2FGY A; 4BVS A; 3E20 B; 4LCK A; 3CMA F; 1RA4 A; 1JJ2 F; 1CN7 A; 4BVT A; 1NMU B; 1YJ9 F; 1VQO F; 3CD6 F; 3CCS F; 3CCV F; 1VQ8 F; 3RA6 A; 3LWO C; 3CCU F; 1Q81 H; 1Q86 H; 5GAP K; 2LBX A; 2QI2 A; 1GO0 A; 5FLX M;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
