2K49A

Solution nmr structure of upf0339 protein so3888 from shewanella oneidensis. northeast structural genomics consortium target sor190
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
118
structure length
118
Chain Sequence
MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-9)AH2 (87-101)EMPTYTI1 (10-13)S2 (15-20)TVIII1 (33-36)TIV1 (21-24)S3 (26-29)S6 (76-81)AH1 (36-50)S7 (106-109)TIV4 (108-111)TVIII2 (50-53)3H1 (53-55)S4 (56-61)S5 (65-72)TI3 (72-75)TIV5 (109-112)TVIII3 (110-113)TIV2 (22-25)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Shewanella oneidensis
publication title Solution NMR structure of UPF0339 protein SO3888 from Shewanella oneidensis.
rcsb
molecule keywords UPF0339 protein SO_3888
total genus 32
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2008-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k49A00
2K49A 2K8EA
chains in the Genus database with same CATH superfamily
2RLOA 3KSYA 3GYPA 4IFSA 2UZRA 4CHJA 1QC6A 1W1HA 2P8VA 3NWFA 4NY0A 2BCJA 2EMTA 2YT1A 3SV1A 4QXAB 4DBBA 2MFQA 1FGYA 3ODXA 3U7DA 3AJ4A 2L1CA 1LB1A 5HE1A 1DYNA 4YL8A 5LONB 2DFKA 2E2XA 3TFMA 2H7EA 4DIXA 2YSZA 3P6AA 4GMXB 1V88A 1WVHA 4IAPA 1I7AA 2NZ8B 5FI0A 3TW1A 1I2HA 1E5WA 3QWMA 5JHHA 3IVFA 2L2IA 4DXAB 1BTKA 1Y5OA 4K2OA 2FJLA 3PSCA 2CY4A 4F7UP 1OY2A 1BWNA 1PMSA 2VRWB 2H7DA 4GN1A 3DCXA 2CAYA 2IFSA 1OMWA 3OHMB 4KHBB 1W1DA 1MAIA 1X11A 3FM8C 1EVHA 3VOQA 1U5EA 3QIJA 4KHBA 4QJ5B 2JP2A 2EJ8A 2QKLA 5DI9B 5D3WA 5DH9B 1M7RA 5D3YA 1ZM0A 1FB8A 4L1RA 1X1FA 4A6HA 2COAA 5L81A 5DHAB 1NU2A 2QKMA 2RGNB 4HATB 2ELBA 3ZDTA 4KHOA 2KR0A 1U27A 1LW3A 5GOWB 2OTXA 4Z2MB 1FGZA 2ZPYA 4HAUB 2VKIA 4ZRIA 3MDBC 3F5RA 4HAXB 3CIKA 2J59M 2EMSA 3PVUA 3VIAA 3BINA 1Z87A 2AL6A 4HHVA 2M14A 2KGXB 2LYDA 2CRFA 4CSQA 4Z2NA 5D3VA 3B77A 2I5CA 5CLLB 4WJ7A 2YS5A 4KHAA 2DHIA 2LKOA 2NMBA 1XKEA 3CXBB 2P0HA 2D10A 2DLWA 2W2XC 4HAYB 5HE3A 3TCAA 5M4YB 2RRFA 1T77A 1U5DA 1XD4A 2DTCA 4GNKB 4WVFB 3BJIA 5D3XA 3NWAA 1TXDA 1NTVA 4C0AA 4A5KA 3AU4A 5IRSA 1P3RA 1UNRA 3PEGA 3DXEA 3F0WA 4OT1A 2YVCA 2D9VA 4EKUA 1MK9B 3HW2B 3PVWA 3FVCA 1WGQA 4TYZA 5JP4A 5C16A 3SO6A 4DX8A 2P0DA 4CYEA 1FHXA 2ROVA 1MIZB 1KZGA 4HAZB 2RSGA 2D11A 2GUMA 5LOPB 2Z0PA 3KY9A 4EMOA 1N3HA 2W2XD 2D9YA 1ISNA 3P7ZA 1U5FA 4GZUA 3NSUA 2R0DA 1V5UA 3G9WA 2J0JA 1DROA 2D9WA 1XCGA 2D9XA 2KUQA 3NW8A 4CHMA 4MK0A 4HB4B 1WI1A 3KRWA 2XQNM 3N7CA 2I1KA 2YS1A 1K5GB 4MY6A 2OQBA 3PP2A 2DN6A 3TVVA 1V89A 3ZVRA 2YS3A 1EAZA 2R09A 2UVMA 1H4RA 2J0KA 4A6KA 3A58A 1V5PA 1KZ7A 2CY5A 3O96A 1X86A 2KCJA 3WA0A 3FSSA 1MI1A 2YT2A 5D27A 3LJUX 1PFJA 1XX0A 3UZTA 2MWNB 5DIFB 4HAWB 3NWDA 4GPTB 1GC6A 2DX1A 5LG4B 3DXDA 1KI1B 4HDQA 4HDOA 2Y8GA 4D6WA 4QJ4B 1ZYIA 1OQNA 1J19A 2YRYA 1SHCA 4GMVA 5JHGA 1BAKA 4K2PA 2G35A 5HE2A 4KVGB 4HB3B 2DHKA 2R2YA 1ZC4B 3SUZA 4EJNA 1ZC3B 5C79A 1QQGA 2D4QA 3RCPA 3A98B 3D8FA 4HSIA 2GCJA 2ROZB 5J3QA 1H10A 4ZRJA 1GG3A 1SGHA 4QJ3B 2DA0A 5DHFB 5JLJB 3HK0A 1XR0B 2COFA 3WYFB 4BBKA 2J0MA 3ODWA 4GXBA 3X23A 2M38A 1FHOA 1MKEA 3U12A 5C5BB 2K00A 3HSAA 4HB2B 2N23A 4PQ0A 2VSZA 5C5BA 2PZ1A 2DKPA 1TJ6A 3OANA 1BTNA 1IRSA 5KCVA 1DDMA 1PLSA 4A6FB 2GS0A 1EGXA 1GC7A 1RRPB 2Z59A 1P5TA 1WJMA 3TO1A 5J3TA 4GOUA 2LOZA 4D0NB 4A6FA 4B6HA 5J3YA 4DX90 1Y19B 1AWEA 1UEFA 1ZSQA 1U5GA 2RNRB 5CLQB 3MPXA 3HQCA 3PVLA 2RUKB 4YONA 2IYBA 3ODOA 2KUPA 2W2WA 1W1GA 1Q67A 2MKRA 2DYQA 2ZKMX 2COCA 3QBVB 3PG7A 1DBHA 4PNKA 5I2SA 1XODA 1P6SA 1X05A 4HAVB 1MPHA 4TKNA 3T06A 2HE7A 2I1JA 3D8DA 1ZVRA 2MDXA 1FHWA 2D9ZA 5FI1A 2HTHB 2DX5A 1V61A 2N0YA 2YF0A 2Z14A 1UNQA 3HIEA 2UZSA 2RVBB 3AU5A 2NBVA 3A8PA 3ULCA 1MK7B 2Z13A 1WJ1A 4K81A 2LOXA 3D8EA 1X1GA 4ZRKA 5HE0A 2DHJA 3FEHA 4K17A 1B55A 1J0WA 2Z0QA 3ULBA 4F7HA 2P0FA 1AQCA 4XWXA 2DKQA 1UPRA 5I2MA 1UNPA 4P7IA 1DDVA 3A8QA 2Y8FA 1V5MA 3U8ZA 1FAOA 1MIXA 2LULA 2ELAA 4HB0B 2KIGA 3SNHA 1WG7A 4F7GA 2AEHA 2FJUB 2Q13A 4OSNA 1RJ2A 2K49A 5KQ1A 3ML4A 2X18A 1M7EA 1TQZA 4Y94A 4L6EA 3DXCA 2EC1A 2KIEA 2GCLA 2K2UA 1U2BA 2GJYA 4H8SA 2Y7BA 4NSWA 3SYXA 2Z0OA 5C6RA 3KZ1A 3KRXA 2CODA 4WSFA 3V5WA 2Z4DA 2DYNA 1K5DB 1U29A 2V76A 2YT0A 4MT7A 1NI2A 2I5FA 2LG1A 2K2JA 4KAXB 3M1IB 2ADZA 5KQ4A 3GYOA 1WGUA 1FOEA 2D2QA 5EFXA 1NTYA 1UPQA 2K8EA 1EF1A 3PZDA 4IOYX 1DDWA
chains in the Genus database with same CATH topology
2ZKMX 3FSSA 3HIEA 4KHAA 4Z2MB 3GYPA 4IFSA 2YT2A 2NBVA 4OT1A 2GUMA 3TW1A 4KHBA 2KIGA 4QJ5B 2R2YA 2Z4DA 5I2SA 3NWFA 2FJUB 3U12A 2Z13A 4QXAB 3NWDA 3TVVA 4OSNA 5M4YB 5LG4B 2RRFA 2K49A 3FVCA 3TO1A 4PQ0A 4GNKB 4L1RA 4HSIA 3NWAA 2GCJA 3GYOA 3A58A 2KIEA 2KUQA 2GCLA 4D6WA 3NW8A 4QJ4B 4CSQA 4KHOA 4DIXA 1ZYIA 2K8EA 5I2MA 2Z59A 4Z2NA 4QJ3B 2KR0A 3OHMB 5IRSA 4KHBB 4IOYX 2Z14A 4GOUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K49 A;  2K8E A; 
#chains in the Genus database with same CATH topology
 2RLO A;  3KSY A;  3GYP A;  4IFS A;  2UZR A;  4CHJ A;  1QC6 A;  1W1H A;  2P8V A;  3NWF A;  4NY0 A;  2BCJ A;  2EMT A;  2YT1 A;  3SV1 A;  4QXA B;  4DBB A;  2MFQ A;  1FGY A;  3ODX A;  3U7D A;  3AJ4 A;  2L1C A;  1LB1 A;  5HE1 A;  1DYN A;  4YL8 A;  5LON B;  2DFK A;  2E2X A;  3TFM A;  2H7E A;  4DIX A;  2YSZ A;  3P6A A;  4GMX B;  1V88 A;  1WVH A;  4IAP A;  1I7A A;  2NZ8 B;  5FI0 A;  3TW1 A;  1I2H A;  1E5W A;  3QWM A;  5JHH A;  3IVF A;  2L2I A;  4DXA B;  1BTK A;  1Y5O A;  4K2O A;  2FJL A;  3PSC A;  2CY4 A;  4F7U P;  1OY2 A;  1BWN A;  1PMS A;  2VRW B;  2H7D A;  4GN1 A;  3DCX A;  2CAY A;  2IFS A;  1OMW A;  3OHM B;  4KHB B;  1W1D A;  1MAI A;  1X11 A;  3FM8 C;  1EVH A;  3VOQ A;  1U5E A;  3QIJ A;  4KHB A;  4QJ5 B;  2JP2 A;  2EJ8 A;  2QKL A;  5DI9 B;  5D3W A;  5DH9 B;  1M7R A;  5D3Y A;  1ZM0 A;  1FB8 A;  4L1R A;  1X1F A;  4A6H A;  2COA A;  5L81 A;  5DHA B;  1NU2 A;  2QKM A;  2RGN B;  4HAT B;  2ELB A;  3ZDT A;  4KHO A;  2KR0 A;  1U27 A;  1LW3 A;  5GOW B;  2OTX A;  4Z2M B;  1FGZ A;  2ZPY A;  4HAU B;  2VKI A;  4ZRI A;  3MDB C;  3F5R A;  4HAX B;  3CIK A;  2J59 M;  2EMS A;  3PVU A;  3VIA A;  3BIN A;  1Z87 A;  2AL6 A;  4HHV A;  2M14 A;  2KGX B;  2LYD A;  2CRF A;  4CSQ A;  4Z2N A;  5D3V A;  3B77 A;  2I5C A;  5CLL B;  4WJ7 A;  2YS5 A;  4KHA A;  2DHI A;  2LKO A;  2NMB A;  1XKE A;  3CXB B;  2P0H A;  2D10 A;  2DLW A;  2W2X C;  4HAY B;  5HE3 A;  3TCA A;  5M4Y B;  2RRF A;  1T77 A;  1U5D A;  1XD4 A;  2DTC A;  4GNK B;  4WVF B;  3BJI A;  5D3X A;  3NWA A;  1TXD A;  1NTV A;  4C0A A;  4A5K A;  3AU4 A;  5IRS A;  1P3R A;  1UNR A;  3PEG A;  3DXE A;  3F0W A;  4OT1 A;  2YVC A;  2D9V A;  4EKU A;  1MK9 B;  3HW2 B;  3PVW A;  3FVC A;  1WGQ A;  4TYZ A;  5JP4 A;  5C16 A;  3SO6 A;  4DX8 A;  2P0D A;  4CYE A;  1FHX A;  2ROV A;  1MIZ B;  1KZG A;  4HAZ B;  2RSG A;  2D11 A;  2GUM A;  5LOP B;  2Z0P A;  3KY9 A;  4EMO A;  1N3H A;  2W2X D;  2D9Y A;  1ISN A;  3P7Z A;  1U5F A;  4GZU A;  3NSU A;  2R0D A;  1V5U A;  3G9W A;  2J0J A;  1DRO A;  2D9W A;  1XCG A;  2D9X A;  2KUQ A;  3NW8 A;  4CHM A;  4MK0 A;  4HB4 B;  1WI1 A;  3KRW A;  2XQN M;  3N7C A;  2I1K A;  2YS1 A;  1K5G B;  4MY6 A;  2OQB A;  3PP2 A;  2DN6 A;  3TVV A;  1V89 A;  3ZVR A;  2YS3 A;  1EAZ A;  2R09 A;  2UVM A;  1H4R A;  2J0K A;  4A6K A;  3A58 A;  1V5P A;  1KZ7 A;  2CY5 A;  3O96 A;  1X86 A;  2KCJ A;  3WA0 A;  3FSS A;  1MI1 A;  2YT2 A;  5D27 A;  3LJU X;  1PFJ A;  1XX0 A;  3UZT A;  2MWN B;  5DIF B;  4HAW B;  3NWD A;  4GPT B;  1GC6 A;  2DX1 A;  5LG4 B;  3DXD A;  1KI1 B;  4HDQ A;  4HDO A;  2Y8G A;  4D6W A;  4QJ4 B;  1ZYI A;  1OQN A;  1J19 A;  2YRY A;  1SHC A;  4GMV A;  5JHG A;  1BAK A;  4K2P A;  2G35 A;  5HE2 A;  4KVG B;  4HB3 B;  2DHK A;  2R2Y A;  1ZC4 B;  3SUZ A;  4EJN A;  1ZC3 B;  5C79 A;  1QQG A;  2D4Q A;  3RCP A;  3A98 B;  3D8F A;  4HSI A;  2GCJ A;  2ROZ B;  5J3Q A;  1H10 A;  4ZRJ A;  1GG3 A;  1SGH A;  4QJ3 B;  2DA0 A;  5DHF B;  5JLJ B;  3HK0 A;  1XR0 B;  2COF A;  3WYF B;  4BBK A;  2J0M A;  3ODW A;  4GXB A;  3X23 A;  2M38 A;  1FHO A;  1MKE A;  3U12 A;  5C5B B;  2K00 A;  3HSA A;  4HB2 B;  2N23 A;  4PQ0 A;  2VSZ A;  5C5B A;  2PZ1 A;  2DKP A;  1TJ6 A;  3OAN A;  1BTN A;  1IRS A;  5KCV A;  1DDM A;  1PLS A;  4A6F B;  2GS0 A;  1EGX A;  1GC7 A;  1RRP B;  2Z59 A;  1P5T A;  1WJM A;  3TO1 A;  5J3T A;  4GOU A;  2LOZ A;  4D0N B;  4A6F A;  4B6H A;  5J3Y A;  4DX9 0;  1Y19 B;  1AWE A;  1UEF A;  1ZSQ A;  1U5G A;  2RNR B;  5CLQ B;  3MPX A;  3HQC A;  3PVL A;  2RUK B;  4YON A;  2IYB A;  3ODO A;  2KUP A;  2W2W A;  1W1G A;  1Q67 A;  2MKR A;  2DYQ A;  2ZKM X;  2COC A;  3QBV B;  3PG7 A;  1DBH A;  4PNK A;  5I2S A;  1XOD A;  1P6S A;  1X05 A;  4HAV B;  1MPH A;  4TKN A;  3T06 A;  2HE7 A;  2I1J A;  3D8D A;  1ZVR A;  2MDX A;  1FHW A;  2D9Z A;  5FI1 A;  2HTH B;  2DX5 A;  1V61 A;  2N0Y A;  2YF0 A;  2Z14 A;  1UNQ A;  3HIE A;  2UZS A;  2RVB B;  3AU5 A;  2NBV A;  3A8P A;  3ULC A;  1MK7 B;  2Z13 A;  1WJ1 A;  4K81 A;  2LOX A;  3D8E A;  1X1G A;  4ZRK A;  5HE0 A;  2DHJ A;  3FEH A;  4K17 A;  1B55 A;  1J0W A;  2Z0Q A;  3ULB A;  4F7H A;  2P0F A;  1AQC A;  4XWX A;  2DKQ A;  1UPR A;  5I2M A;  1UNP A;  4P7I A;  1DDV A;  3A8Q A;  2Y8F A;  1V5M A;  3U8Z A;  1FAO A;  1MIX A;  2LUL A;  2ELA A;  4HB0 B;  2KIG A;  3SNH A;  1WG7 A;  4F7G A;  2AEH A;  2FJU B;  2Q13 A;  4OSN A;  1RJ2 A;  2K49 A;  5KQ1 A;  3ML4 A;  2X18 A;  1M7E A;  1TQZ A;  4Y94 A;  4L6E A;  3DXC A;  2EC1 A;  2KIE A;  2GCL A;  2K2U A;  1U2B A;  2GJY A;  4H8S A;  2Y7B A;  4NSW A;  3SYX A;  2Z0O A;  5C6R A;  3KZ1 A;  3KRX A;  2COD A;  4WSF A;  3V5W A;  2Z4D A;  2DYN A;  1K5D B;  1U29 A;  2V76 A;  2YT0 A;  4MT7 A;  1NI2 A;  2I5F A;  2LG1 A;  2K2J A;  4KAX B;  3M1I B;  2ADZ A;  5KQ4 A;  3GYO A;  1WGU A;  1FOE A;  2D2Q A;  5EFX A;  1NTY A;  1UPQ A;  2K8E A;  1EF1 A;  3PZD A;  4IOY X;  1DDW A; 
#chains in the Genus database with same CATH homology
 2ZKM X;  3FSS A;  3HIE A;  4KHA A;  4Z2M B;  3GYP A;  4IFS A;  2YT2 A;  2NBV A;  4OT1 A;  2GUM A;  3TW1 A;  4KHB A;  2KIG A;  4QJ5 B;  2R2Y A;  2Z4D A;  5I2S A;  3NWF A;  2FJU B;  3U12 A;  2Z13 A;  4QXA B;  3NWD A;  3TVV A;  4OSN A;  5M4Y B;  5LG4 B;  2RRF A;  2K49 A;  3FVC A;  3TO1 A;  4PQ0 A;  4GNK B;  4L1R A;  4HSI A;  3NWA A;  2GCJ A;  3GYO A;  3A58 A;  2KIE A;  2KUQ A;  2GCL A;  4D6W A;  3NW8 A;  4QJ4 B;  4CSQ A;  4KHO A;  4DIX A;  1ZYI A;  2K8E A;  5I2M A;  2Z59 A;  4Z2N A;  4QJ3 B;  2KR0 A;  3OHM B;  5IRS A;  4KHB B;  4IOY X;  2Z14 A;  4GOU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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