2Z4DA

Nmr structures of yeast proteasome component rpn13
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
96
structure length
96
Chain Sequence
TVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSKSGRIFALVFSSNERYFFWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Nuclear protein
molecule keywords 26S proteasome regulatory subunit RPN13
publication title Proteasome subunit Rpn13 is a novel ubiquitin receptor.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 7
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2007-06-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.70 Mainly Beta Roll PH-domain like PH-domain like 2z4dA00
2Z59A 2NBVA 2R2YA 2KR0A 2Z4DA 5IRSA
chains in the Genus database with same CATH superfamily
1PMSA 3TCAA 2GCLA 4WSFA 5GOWB 1XODA 3F5RA 4GMVA 5CLQB 4PQ0A 1AQCA 1UEFA 4HDQA 4EJNA 2RGNB 4DX90 3D8FA 4F7HA 2JP2A 2DKQA 3ULCA 3M1IB 1PLSA 1ZSQA 3MDBC 1KI1B 1NTYA 5C79A 1EAZA 3SYXA 1WG7A 1TXDA 2NBVA 2N23A 4DBBA 4Z2NA 2Z0OA 4TYZA 2RRFA 1Y5OA 1BWNA 5KCVA 2DLWA 3D8EA 1I7AA 2RNRB 4GPTB 4CSQA 5D3VA 4OSNA 2OQBA 2EJ8A 3BINA 1WGQA 2W2XD 1Z87A 2N0YA 1AWEA 3AU5A 1XCGA 2J0JA 1OQNA 2CY4A 1P3RA 2DYQA 2UZRA 2K49A 2VRWB 2J0MA 3V5WA 4CYEA 5JHGA 3B77A 4K2PA 1V5UA 1U27A 1N3HA 5IRSA 3PVLA 2DFKA 2MFQA 3DXCA 3HK0A 3PVUA 3HSAA 2Q13A 3P7ZA 4IAPA 4HB4B 1V89A 1WGUA 4K81A 5I2SA 1DBHA 2YRYA 2QKMA 2DX1A 3GYPA 2YT1A 1XX0A 2KUQA 2DTCA 3HIEA 4F7UP 3VIAA 4HAWB 2L2IA 1K5DB 2D9XA 3TW1A 1RRPB 1UNPA 1WI1A 3GYOA 1FHOA 1EVHA 2UVMA 4DXAB 3F0WA 4CHMA 2EMTA 4K2OA 2K2JA 2RSGA 2W2XC 4MY6A 1PFJA 3TO1A 4HAZB 3NWFA 2Y8GA 3ULBA 3DXDA 1BTKA 4QJ5B 2Y8FA 1NI2A 1U29A 2NZ8B 2KIGA 2P0FA 2LOXA 2DYNA 2LULA 2D10A 1T77A 1K5GB 4QJ3B 2RLOA 4BBKA 2GUMA 1MK7B 3A8PA 2DKPA 2H7EA 1FB8A 3SNHA 4IFSA 4L6EA 3U7DA 1WJ1A 2MWNB 1ZM0A 1TJ6A 3KZ1A 2QKLA 5I2MA 4HAUB 2I5FA 5KQ1A 3T06A 1GC6A 4PNKA 2FJUB 4KHAA 2KUPA 2I5CA 2YS5A 5D27A 4IOYX 1QQGA 1GC7A 2W2WA 4HHVA 2VKIA 2ROZB 3IVFA 2D4QA 2YS3A 1KZ7A 2YT2A 2Y7BA 3FEHA 1DYNA 4A6KA 2HTHB 2P0DA 2I1KA 1BAKA 3ODWA 4NY0A 4TKNA 1MK9B 2P8VA 4ZRKA 1FGYA 3AJ4A 2I1JA 1UNRA 2KIEA 3PVWA 1W1HA 2KGXB 2NMBA 2ZPYA 4HB2B 1U5GA 2EC1A 5C5BB 1FOEA 2KCJA 2V76A 3HQCA 1V61A 4KHOA 4QJ4B 1DDVA 1W1GA 5M4YB 2L1CA 5J3QA 2G35A 2UZSA 3KY9A 4GMXB 5DI9B 2DN6A 3QWMA 5JHHA 2K8EA 1V5PA 5LOPB 4HATB 1U5EA 2R2YA 3ML4A 5HE3A 2XQNM 2ELBA 2COFA 1KZGA 3A8QA 4CHJA 3NWDA 3A98B 1Q67A 1XD4A 4D0NB 5HE0A 2D9WA 5EFXA 2YT0A 2ADZA 3TVVA 1BTNA 1MAIA 1SHCA 3U8ZA 1XKEA 1P5TA 1J0WA 3FSSA 1M7RA 4K17A 4QXAB 3WYFB 5LONB 2KR0A 3ODXA 1ZC4B 3KSYA 2D11A 1EF1A 2ROVA 1MPHA 4EMOA 5D3XA 4MK0A 3RCPA 2IYBA 4HAVB 1X05A 4B6HA 2CRFA 5J3TA 2CAYA 1X1FA 1LW3A 1GG3A 1W1DA 3PZDA 3CXBB 1MIXA 2CY5A 3MPXA 4NSWA 2OTXA 4WJ7A 5C16A 5C5BA 1DROA 3UZTA 2RVBB 3ODOA 1U2BA 2DHIA 5JP4A 3U12A 3PSCA 3QIJA 1MKEA 2VSZA 1OY2A 1XR0B 4HAXB 2YF0A 1M7EA 1FHWA 3CIKA 2Z13A 5JLJB 3O96A 2ZKMX 3FM8C 4P7IA 1U5FA 1TQZA 2DX5A 4KHBB 1SGHA 5FI1A 4GZUA 2M38A 3PG7A 1B55A 1RJ2A 4YONA 5KQ4A 1UPRA 2Z0QA 3VOQA 2J59M 3P6AA 4HSIA 4L1RA 1H10A 3OHMB 3PEGA 1FHXA 5HE2A 2IFSA 2E2XA 2CODA 3X23A 4D6WA 1DDMA 2H7DA 2DA0A 4HDOA 3WA0A 2HE7A 1U5DA 2Z14A 1ISNA 3OANA 5D3WA 3HW2B 5DHAB 4F7GA 3KRXA 4GNKB 2Z4DA 1FAOA 3NW8A 2GCJA 1X86A 4GXBA 3QBVB 1MI1A 2EMSA 2COAA 5HE1A 1X1GA 4A6FB 4GOUA 1E5WA 1UPQA 2M14A 2PZ1A 4XWXA 2DHJA 2GJYA 3DXEA 4YL8A 2D2QA 2BCJA 4EKUA 2COCA 2R09A 5CLLB 2AL6A 2LOZA 4MT7A 2D9VA 5DIFB 3SUZA 2YVCA 1OMWA 3ZDTA 4Z2MB 4A6HA 2YS1A 4C0AA 2MKRA 1UNQA 4A5KA 3SV1A 3DCXA 4KVGB 4Y94A 4HB0B 4DX8A 3FVCA 2ELAA 2J0KA 1I2HA 4KHBA 3LJUX 3NWAA 5J3YA 1QC6A 4OT1A 1EGXA 4H8SA 2D9YA 3D8DA 3N7CA 3G9WA 4DIXA 2MDXA 2R0DA 2DHKA 4ZRIA 1V5MA 2LKOA 2P0HA 3KRWA 5LG4B 2K00A 1Y19B 5DHFB 1ZVRA 4GN1A 1WJMA 3TFMA 3AU4A 1MIZB 2LYDA 1LB1A 2RUKB 1NTVA 1X11A 1V88A 5FI0A 5DH9B 1DDWA 2K2UA 4KAXB 1J19A 1ZC3B 3NSUA 3SO6A 2X18A 4HB3B 1P6SA 4ZRJA 2GS0A 4A6FA 1NU2A 3ZVRA 2FJLA 2AEHA 2LG1A 5L81A 1FGZA 2D9ZA 2Z59A 1H4RA 4HAYB 5D3YA 2YSZA 5C6RA 2Z0PA 3A58A 1WVHA 3PP2A 3BJIA 4WVFB 1ZYIA 1IRSA
chains in the Genus database with same CATH topology
4QJ3B 2ZKMX 4GOUA 2K8EA 2Z14A 3GYOA 3FVCA 4IOYX 2KIEA 3FSSA 2GUMA 2GCLA 4KHBB 4KHBA 4QXAB 4CSQA 4PQ0A 5I2SA 2R2YA 3NWAA 3TO1A 4IFSA 4OSNA 2KR0A 4GNKB 3NWFA 2YT2A 5LG4B 2Z4DA 4OT1A 4HSIA 2Z59A 4L1RA 5I2MA 4QJ5B 3NW8A 3TW1A 3GYPA 2KUQA 4KHOA 4Z2MB 2GCJA 3NWDA 3OHMB 4DIXA 4QJ4B 3U12A 3HIEA 2KIGA 2K49A 2FJUB 5M4YB 4KHAA 2NBVA 3A58A 4Z2NA 4D6WA 2RRFA 1ZYIA 3TVVA 5IRSA 2Z13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z59 A;  2NBV A;  2R2Y A;  2KR0 A;  2Z4D A;  5IRS A; 
#chains in the Genus database with same CATH topology
 1PMS A;  3TCA A;  2GCL A;  4WSF A;  5GOW B;  1XOD A;  3F5R A;  4GMV A;  5CLQ B;  4PQ0 A;  1AQC A;  1UEF A;  4HDQ A;  4EJN A;  2RGN B;  4DX9 0;  3D8F A;  4F7H A;  2JP2 A;  2DKQ A;  3ULC A;  3M1I B;  1PLS A;  1ZSQ A;  3MDB C;  1KI1 B;  1NTY A;  5C79 A;  1EAZ A;  3SYX A;  1WG7 A;  1TXD A;  2NBV A;  2N23 A;  4DBB A;  4Z2N A;  2Z0O A;  4TYZ A;  2RRF A;  1Y5O A;  1BWN A;  5KCV A;  2DLW A;  3D8E A;  1I7A A;  2RNR B;  4GPT B;  4CSQ A;  5D3V A;  4OSN A;  2OQB A;  2EJ8 A;  3BIN A;  1WGQ A;  2W2X D;  1Z87 A;  2N0Y A;  1AWE A;  3AU5 A;  1XCG A;  2J0J A;  1OQN A;  2CY4 A;  1P3R A;  2DYQ A;  2UZR A;  2K49 A;  2VRW B;  2J0M A;  3V5W A;  4CYE A;  5JHG A;  3B77 A;  4K2P A;  1V5U A;  1U27 A;  1N3H A;  5IRS A;  3PVL A;  2DFK A;  2MFQ A;  3DXC A;  3HK0 A;  3PVU A;  3HSA A;  2Q13 A;  3P7Z A;  4IAP A;  4HB4 B;  1V89 A;  1WGU A;  4K81 A;  5I2S A;  1DBH A;  2YRY A;  2QKM A;  2DX1 A;  3GYP A;  2YT1 A;  1XX0 A;  2KUQ A;  2DTC A;  3HIE A;  4F7U P;  3VIA A;  4HAW B;  2L2I A;  1K5D B;  2D9X A;  3TW1 A;  1RRP B;  1UNP A;  1WI1 A;  3GYO A;  1FHO A;  1EVH A;  2UVM A;  4DXA B;  3F0W A;  4CHM A;  2EMT A;  4K2O A;  2K2J A;  2RSG A;  2W2X C;  4MY6 A;  1PFJ A;  3TO1 A;  4HAZ B;  3NWF A;  2Y8G A;  3ULB A;  3DXD A;  1BTK A;  4QJ5 B;  2Y8F A;  1NI2 A;  1U29 A;  2NZ8 B;  2KIG A;  2P0F A;  2LOX A;  2DYN A;  2LUL A;  2D10 A;  1T77 A;  1K5G B;  4QJ3 B;  2RLO A;  4BBK A;  2GUM A;  1MK7 B;  3A8P A;  2DKP A;  2H7E A;  1FB8 A;  3SNH A;  4IFS A;  4L6E A;  3U7D A;  1WJ1 A;  2MWN B;  1ZM0 A;  1TJ6 A;  3KZ1 A;  2QKL A;  5I2M A;  4HAU B;  2I5F A;  5KQ1 A;  3T06 A;  1GC6 A;  4PNK A;  2FJU B;  4KHA A;  2KUP A;  2I5C A;  2YS5 A;  5D27 A;  4IOY X;  1QQG A;  1GC7 A;  2W2W A;  4HHV A;  2VKI A;  2ROZ B;  3IVF A;  2D4Q A;  2YS3 A;  1KZ7 A;  2YT2 A;  2Y7B A;  3FEH A;  1DYN A;  4A6K A;  2HTH B;  2P0D A;  2I1K A;  1BAK A;  3ODW A;  4NY0 A;  4TKN A;  1MK9 B;  2P8V A;  4ZRK A;  1FGY A;  3AJ4 A;  2I1J A;  1UNR A;  2KIE A;  3PVW A;  1W1H A;  2KGX B;  2NMB A;  2ZPY A;  4HB2 B;  1U5G A;  2EC1 A;  5C5B B;  1FOE A;  2KCJ A;  2V76 A;  3HQC A;  1V61 A;  4KHO A;  4QJ4 B;  1DDV A;  1W1G A;  5M4Y B;  2L1C A;  5J3Q A;  2G35 A;  2UZS A;  3KY9 A;  4GMX B;  5DI9 B;  2DN6 A;  3QWM A;  5JHH A;  2K8E A;  1V5P A;  5LOP B;  4HAT B;  1U5E A;  2R2Y A;  3ML4 A;  5HE3 A;  2XQN M;  2ELB A;  2COF A;  1KZG A;  3A8Q A;  4CHJ A;  3NWD A;  3A98 B;  1Q67 A;  1XD4 A;  4D0N B;  5HE0 A;  2D9W A;  5EFX A;  2YT0 A;  2ADZ A;  3TVV A;  1BTN A;  1MAI A;  1SHC A;  3U8Z A;  1XKE A;  1P5T A;  1J0W A;  3FSS A;  1M7R A;  4K17 A;  4QXA B;  3WYF B;  5LON B;  2KR0 A;  3ODX A;  1ZC4 B;  3KSY A;  2D11 A;  1EF1 A;  2ROV A;  1MPH A;  4EMO A;  5D3X A;  4MK0 A;  3RCP A;  2IYB A;  4HAV B;  1X05 A;  4B6H A;  2CRF A;  5J3T A;  2CAY A;  1X1F A;  1LW3 A;  1GG3 A;  1W1D A;  3PZD A;  3CXB B;  1MIX A;  2CY5 A;  3MPX A;  4NSW A;  2OTX A;  4WJ7 A;  5C16 A;  5C5B A;  1DRO A;  3UZT A;  2RVB B;  3ODO A;  1U2B A;  2DHI A;  5JP4 A;  3U12 A;  3PSC A;  3QIJ A;  1MKE A;  2VSZ A;  1OY2 A;  1XR0 B;  4HAX B;  2YF0 A;  1M7E A;  1FHW A;  3CIK A;  2Z13 A;  5JLJ B;  3O96 A;  2ZKM X;  3FM8 C;  4P7I A;  1U5F A;  1TQZ A;  2DX5 A;  4KHB B;  1SGH A;  5FI1 A;  4GZU A;  2M38 A;  3PG7 A;  1B55 A;  1RJ2 A;  4YON A;  5KQ4 A;  1UPR A;  2Z0Q A;  3VOQ A;  2J59 M;  3P6A A;  4HSI A;  4L1R A;  1H10 A;  3OHM B;  3PEG A;  1FHX A;  5HE2 A;  2IFS A;  2E2X A;  2COD A;  3X23 A;  4D6W A;  1DDM A;  2H7D A;  2DA0 A;  4HDO A;  3WA0 A;  2HE7 A;  1U5D A;  2Z14 A;  1ISN A;  3OAN A;  5D3W A;  3HW2 B;  5DHA B;  4F7G A;  3KRX A;  4GNK B;  2Z4D A;  1FAO A;  3NW8 A;  2GCJ A;  1X86 A;  4GXB A;  3QBV B;  1MI1 A;  2EMS A;  2COA A;  5HE1 A;  1X1G A;  4A6F B;  4GOU A;  1E5W A;  1UPQ A;  2M14 A;  2PZ1 A;  4XWX A;  2DHJ A;  2GJY A;  3DXE A;  4YL8 A;  2D2Q A;  2BCJ A;  4EKU A;  2COC A;  2R09 A;  5CLL B;  2AL6 A;  2LOZ A;  4MT7 A;  2D9V A;  5DIF B;  3SUZ A;  2YVC A;  1OMW A;  3ZDT A;  4Z2M B;  4A6H A;  2YS1 A;  4C0A A;  2MKR A;  1UNQ A;  4A5K A;  3SV1 A;  3DCX A;  4KVG B;  4Y94 A;  4HB0 B;  4DX8 A;  3FVC A;  2ELA A;  2J0K A;  1I2H A;  4KHB A;  3LJU X;  3NWA A;  5J3Y A;  1QC6 A;  4OT1 A;  1EGX A;  4H8S A;  2D9Y A;  3D8D A;  3N7C A;  3G9W A;  4DIX A;  2MDX A;  2R0D A;  2DHK A;  4ZRI A;  1V5M A;  2LKO A;  2P0H A;  3KRW A;  5LG4 B;  2K00 A;  1Y19 B;  5DHF B;  1ZVR A;  4GN1 A;  1WJM A;  3TFM A;  3AU4 A;  1MIZ B;  2LYD A;  1LB1 A;  2RUK B;  1NTV A;  1X11 A;  1V88 A;  5FI0 A;  5DH9 B;  1DDW A;  2K2U A;  4KAX B;  1J19 A;  1ZC3 B;  3NSU A;  3SO6 A;  2X18 A;  4HB3 B;  1P6S A;  4ZRJ A;  2GS0 A;  4A6F A;  1NU2 A;  3ZVR A;  2FJL A;  2AEH A;  2LG1 A;  5L81 A;  1FGZ A;  2D9Z A;  2Z59 A;  1H4R A;  4HAY B;  5D3Y A;  2YSZ A;  5C6R A;  2Z0P A;  3A58 A;  1WVH A;  3PP2 A;  3BJI A;  4WVF B;  1ZYI A;  1IRS A; 
#chains in the Genus database with same CATH homology
 4QJ3 B;  2ZKM X;  4GOU A;  2K8E A;  2Z14 A;  3GYO A;  3FVC A;  4IOY X;  2KIE A;  3FSS A;  2GUM A;  2GCL A;  4KHB B;  4KHB A;  4QXA B;  4CSQ A;  4PQ0 A;  5I2S A;  2R2Y A;  3NWA A;  3TO1 A;  4IFS A;  4OSN A;  2KR0 A;  4GNK B;  3NWF A;  2YT2 A;  5LG4 B;  2Z4D A;  4OT1 A;  4HSI A;  2Z59 A;  4L1R A;  5I2M A;  4QJ5 B;  3NW8 A;  3TW1 A;  3GYP A;  2KUQ A;  4KHO A;  4Z2M B;  2GCJ A;  3NWD A;  3OHM B;  4DIX A;  4QJ4 B;  3U12 A;  3HIE A;  2KIG A;  2K49 A;  2FJU B;  5M4Y B;  4KHA A;  2NBV A;  3A58 A;  4Z2N A;  4D6W A;  2RRF A;  1ZYI A;  3TVV A;  5IRS A;  2Z13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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