4OSNA

Crystal structure of engineered hcmv glycoprotein b domain ii
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
114
structure length
110
Chain Sequence
NEDLDEGIMVVYKRNGCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMSDSALDCVRDEAINKLQQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human cytomegalovirus
publication title Crystal structure of engineered HCMV glycoprotein B Domain II
rcsb
molecule keywords Envelope glycoprotein B
total genus 29
structure length 110
sequence length 114
ec nomenclature
pdb deposition date 2014-02-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17416 Glycoprot_B_PH1 Herpesvirus Glycoprotein B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.100 Mainly Beta Roll PH-domain like PH-domain like 4osnA00
4HSIA 3NW8A 3FVCA 4OT1A 3NWDA 2GUMA 3NWFA 3NWAA 4OSNA 4L1RA
chains in the Genus database with same CATH superfamily
2DTCA 1FGZA 5DHFB 1UNQA 2YS1A 3PVUA 3T06A 1GC7A 4YONA 1LW3A 2CY5A 3DXCA 5LONB 2R09A 5L81A 1MAIA 1FOEA 1Z87A 1W1GA 2J0MA 1I2HA 2DYNA 2ZKMX 3NWFA 1BAKA 2YS5A 4HB3B 3PSCA 1UNPA 2J59M 4P7IA 3FEHA 2LYDA 2Z4DA 3IVFA 4NY0A 2N23A 3NW8A 2YT1A 1TXDA 4A6FA 3PEGA 4Z2MB 3M1IB 3ULCA 2ZPYA 2KIEA 3SYXA 2D9ZA 2GJYA 2Q13A 5DIFB 2D9VA 1H4RA 3DXEA 1ISNA 2KR0A 1V5PA 4A6KA 2DHJA 3B77A 3KRWA 5HE0A 2Z14A 1BTNA 3FVCA 5D3WA 2DA0A 1U5EA 4DBBA 2NZ8B 2GUMA 2YRYA 5CLQB 3A8QA 1J0WA 5D3YA 1WG7A 1FHOA 1LB1A 2QKMA 3WYFB 4QJ4B 1NU2A 1DDVA 5KQ1A 3F5RA 2NMBA 4IFSA 2D11A 4GPTB 2LOXA 5DI9B 2D9YA 4HSIA 2Y8FA 2EJ8A 4KHOA 1UPQA 2LULA 1XD4A 2DHKA 4HAVB 2W2XD 4K2OA 4CHMA 4HAUB 1UPRA 2Y8GA 3QBVB 2D10A 3O96A 3F0WA 4Y94A 2K00A 2CRFA 2P8VA 3DCXA 2GS0A 3V5WA 4GZUA 2R2YA 2KUPA 2RLOA 3VOQA 2COAA 3NWDA 3KSYA 4HB4B 3SNHA 1DDMA 2YT2A 3AJ4A 3MPXA 4L1RA 1OY2A 4TKNA 1X86A 2VKIA 3HW2B 4A6FB 2P0DA 2CAYA 1WJ1A 4ZRJA 3BJIA 4WVFB 5LOPB 1M7EA 2PZ1A 4HAXB 3SV1A 4F7GA 1WI1A 3GYOA 2H7EA 2D4QA 4A6HA 2Z59A 4K81A 2FJUB 2GCLA 1Y5OA 3NWAA 1SGHA 2AL6A 4CHJA 3TFMA 1FGYA 1UNRA 4WSFA 3N7CA 1W1HA 4DXAB 2CY4A 2D2QA 1ZC4B 1AQCA 3CXBB 1BTKA 4GNKB 2EMSA 3ML4A 1X1FA 2MFQA 4MK0A 1DDWA 1P5TA 4CYEA 2YF0A 2HTHB 3RCPA 4HB0B 1P3RA 3TO1A 5FI1A 3LJUX 2GCJA 3PP2A 1IRSA 2DYQA 3FM8C 4HB2B 2R0DA 2RSGA 3A98B 3MDBC 4H8SA 1MI1A 5DH9B 5C16A 2EC1A 2M14A 1V88A 2ROZB 4MY6A 1KZ7A 2YT0A 5C79A 4EJNA 2Z13A 4QXAB 5FI0A 2RRFA 4HAWB 2Z0QA 1Y19B 4IOYX 4IAPA 1OMWA 3ZVRA 2VSZA 2LG1A 2DHIA 5JHHA 3G9WA 5CLLB 5DHAB 1U5FA 3P7ZA 4KAXB 3TW1A 5LG4B 1MIXA 2DX1A 4PNKA 1V5UA 1H10A 4HAZB 1UEFA 1U5DA 5C6RA 1OQNA 2RNRB 2K49A 4NSWA 2MKRA 5C5BA 5D3VA 2UZRA 2I1KA 2Y7BA 1V61A 4Z2NA 3PVWA 2VRWB 1DBHA 4OT1A 1NTVA 5EFXA 3A8PA 5HE2A 1U27A 2ROVA 2DLWA 1WVHA 4GMXB 2OTXA 1XX0A 5M4YB 2KCJA 4HAYB 3PVLA 1MIZB 4KHAA 4DX90 4EKUA 2H7DA 1U2BA 1NTYA 2D9XA 3U8ZA 1P6SA 1U5GA 1E5WA 4TYZA 3KZ1A 2IYBA 1WJMA 2JP2A 4D0NB 4ZRKA 1ZC3B 3ODOA 3HIEA 5J3QA 1DYNA 1FB8A 1TJ6A 5KQ4A 1XKEA 3PZDA 4YL8A 1Q67A 2DX5A 2P0FA 5I2SA 3PG7A 2LKOA 1FHWA 2OQBA 4ZRIA 1NI2A 4EMOA 3SO6A 1QC6A 2DKPA 2E2XA 3TVVA 2KIGA 3UZTA 1PLSA 4F7UP 3ODXA 5IRSA 2I5CA 1ZYIA 5J3TA 1RJ2A 2D9WA 4QJ3B 2K2JA 2ELBA 3U7DA 2XQNM 5HE1A 1BWNA 1EVHA 3HK0A 4GN1A 5JLJB 1FAOA 2L1CA 4KVGB 1KZGA 5C5BB 1EAZA 2W2WA 1WGQA 5D27A 4PQ0A 2FJLA 2J0JA 3GYPA 2L2IA 4OSNA 2KUQA 2DKQA 2ELAA 5HE3A 2V76A 1TQZA 4L6EA 3NSUA 1I7AA 2RVBB 3ODWA 3AU4A 2RUKB 4KHBA 3HSAA 3D8FA 1EF1A 1PFJA 1SHCA 3AU5A 2I1JA 2Z0PA 1XR0B 4WJ7A 1W1DA 2RGNB 1M7RA 1DROA 2IFSA 1X11A 4DIXA 4GOUA 2HE7A 2G35A 1K5GB 4HDOA 1B55A 2Z0OA 5JHGA 1K5DB 4HATB 2W2XC 4BBKA 3QIJA 5JP4A 1XODA 1KI1B 1ZM0A 2YSZA 2QKLA 2KGXB 2MWNB 2MDXA 4HDQA 1MK7B 3ULBA 2DFKA 2EMTA 2UZSA 1ZVRA 2ADZA 1V5MA 4F7HA 3VIAA 5KCVA 3A58A 4D6WA 1QQGA 2YVCA 1MKEA 2NBVA 1X1GA 3U12A 1J19A 1MPHA 5GOWB 4A5KA 3TCAA 2UVMA 1PMSA 2X18A 4GXBA 4MT7A 4CSQA 1XCGA 2COCA 3X23A 2CODA 3BINA 4C0AA 1ZSQA 4KHBB 1X05A 4B6HA 3OANA 3KY9A 3DXDA 3OHMB 4K17A 3QWMA 3ZDTA 3FSSA 3WA0A 4QJ5B 4K2PA 3CIKA 1N3HA 1FHXA 1MK9B 2LOZA 2K8EA 1GC6A 5I2MA 1RRPB 1U29A 4XWXA 2N0YA 1AWEA 1WGUA 2BCJA 2DN6A 1GG3A 2YS3A 3P6AA 3HQCA 1EGXA 2M38A 3KRXA 1T77A 2COFA 2K2UA 3D8DA 2J0KA 2I5FA 3D8EA 3SUZA 4HHVA 4DX8A 5D3XA 1V89A 2P0HA 5J3YA 2AEHA 4GMVA
chains in the Genus database with same CATH topology
3NW8A 3HIEA 4QJ3B 4KHBB 4Z2MB 3OHMB 3A58A 5M4YB 3TW1A 2KIEA 4DIXA 4D6WA 4GOUA 4QJ4B 5LG4B 4KHAA 3FSSA 4KHBA 3GYOA 4GNKB 4QJ5B 4IFSA 3U12A 2NBVA 2R2YA 2Z59A 4HSIA 4PQ0A 2K49A 4KHOA 2KR0A 2Z13A 4QXAB 5I2SA 3NWDA 2K8EA 2FJUB 2RRFA 3NWFA 2ZKMX 2GCLA 3NWAA 2YT2A 4IOYX 4L1RA 2Z14A 5I2MA 4Z2NA 3FVCA 3TO1A 4OT1A 3TVVA 4CSQA 2KIGA 2Z4DA 3GYPA 2GUMA 5IRSA 2GCJA 4OSNA 1ZYIA 2KUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HSI A;  3NW8 A;  3FVC A;  4OT1 A;  3NWD A;  2GUM A;  3NWF A;  3NWA A;  4OSN A;  4L1R A; 
#chains in the Genus database with same CATH topology
 2DTC A;  1FGZ A;  5DHF B;  1UNQ A;  2YS1 A;  3PVU A;  3T06 A;  1GC7 A;  4YON A;  1LW3 A;  2CY5 A;  3DXC A;  5LON B;  2R09 A;  5L81 A;  1MAI A;  1FOE A;  1Z87 A;  1W1G A;  2J0M A;  1I2H A;  2DYN A;  2ZKM X;  3NWF A;  1BAK A;  2YS5 A;  4HB3 B;  3PSC A;  1UNP A;  2J59 M;  4P7I A;  3FEH A;  2LYD A;  2Z4D A;  3IVF A;  4NY0 A;  2N23 A;  3NW8 A;  2YT1 A;  1TXD A;  4A6F A;  3PEG A;  4Z2M B;  3M1I B;  3ULC A;  2ZPY A;  2KIE A;  3SYX A;  2D9Z A;  2GJY A;  2Q13 A;  5DIF B;  2D9V A;  1H4R A;  3DXE A;  1ISN A;  2KR0 A;  1V5P A;  4A6K A;  2DHJ A;  3B77 A;  3KRW A;  5HE0 A;  2Z14 A;  1BTN A;  3FVC A;  5D3W A;  2DA0 A;  1U5E A;  4DBB A;  2NZ8 B;  2GUM A;  2YRY A;  5CLQ B;  3A8Q A;  1J0W A;  5D3Y A;  1WG7 A;  1FHO A;  1LB1 A;  2QKM A;  3WYF B;  4QJ4 B;  1NU2 A;  1DDV A;  5KQ1 A;  3F5R A;  2NMB A;  4IFS A;  2D11 A;  4GPT B;  2LOX A;  5DI9 B;  2D9Y A;  4HSI A;  2Y8F A;  2EJ8 A;  4KHO A;  1UPQ A;  2LUL A;  1XD4 A;  2DHK A;  4HAV B;  2W2X D;  4K2O A;  4CHM A;  4HAU B;  1UPR A;  2Y8G A;  3QBV B;  2D10 A;  3O96 A;  3F0W A;  4Y94 A;  2K00 A;  2CRF A;  2P8V A;  3DCX A;  2GS0 A;  3V5W A;  4GZU A;  2R2Y A;  2KUP A;  2RLO A;  3VOQ A;  2COA A;  3NWD A;  3KSY A;  4HB4 B;  3SNH A;  1DDM A;  2YT2 A;  3AJ4 A;  3MPX A;  4L1R A;  1OY2 A;  4TKN A;  1X86 A;  2VKI A;  3HW2 B;  4A6F B;  2P0D A;  2CAY A;  1WJ1 A;  4ZRJ A;  3BJI A;  4WVF B;  5LOP B;  1M7E A;  2PZ1 A;  4HAX B;  3SV1 A;  4F7G A;  1WI1 A;  3GYO A;  2H7E A;  2D4Q A;  4A6H A;  2Z59 A;  4K81 A;  2FJU B;  2GCL A;  1Y5O A;  3NWA A;  1SGH A;  2AL6 A;  4CHJ A;  3TFM A;  1FGY A;  1UNR A;  4WSF A;  3N7C A;  1W1H A;  4DXA B;  2CY4 A;  2D2Q A;  1ZC4 B;  1AQC A;  3CXB B;  1BTK A;  4GNK B;  2EMS A;  3ML4 A;  1X1F A;  2MFQ A;  4MK0 A;  1DDW A;  1P5T A;  4CYE A;  2YF0 A;  2HTH B;  3RCP A;  4HB0 B;  1P3R A;  3TO1 A;  5FI1 A;  3LJU X;  2GCJ A;  3PP2 A;  1IRS A;  2DYQ A;  3FM8 C;  4HB2 B;  2R0D A;  2RSG A;  3A98 B;  3MDB C;  4H8S A;  1MI1 A;  5DH9 B;  5C16 A;  2EC1 A;  2M14 A;  1V88 A;  2ROZ B;  4MY6 A;  1KZ7 A;  2YT0 A;  5C79 A;  4EJN A;  2Z13 A;  4QXA B;  5FI0 A;  2RRF A;  4HAW B;  2Z0Q A;  1Y19 B;  4IOY X;  4IAP A;  1OMW A;  3ZVR A;  2VSZ A;  2LG1 A;  2DHI A;  5JHH A;  3G9W A;  5CLL B;  5DHA B;  1U5F A;  3P7Z A;  4KAX B;  3TW1 A;  5LG4 B;  1MIX A;  2DX1 A;  4PNK A;  1V5U A;  1H10 A;  4HAZ B;  1UEF A;  1U5D A;  5C6R A;  1OQN A;  2RNR B;  2K49 A;  4NSW A;  2MKR A;  5C5B A;  5D3V A;  2UZR A;  2I1K A;  2Y7B A;  1V61 A;  4Z2N A;  3PVW A;  2VRW B;  1DBH A;  4OT1 A;  1NTV A;  5EFX A;  3A8P A;  5HE2 A;  1U27 A;  2ROV A;  2DLW A;  1WVH A;  4GMX B;  2OTX A;  1XX0 A;  5M4Y B;  2KCJ A;  4HAY B;  3PVL A;  1MIZ B;  4KHA A;  4DX9 0;  4EKU A;  2H7D A;  1U2B A;  1NTY A;  2D9X A;  3U8Z A;  1P6S A;  1U5G A;  1E5W A;  4TYZ A;  3KZ1 A;  2IYB A;  1WJM A;  2JP2 A;  4D0N B;  4ZRK A;  1ZC3 B;  3ODO A;  3HIE A;  5J3Q A;  1DYN A;  1FB8 A;  1TJ6 A;  5KQ4 A;  1XKE A;  3PZD A;  4YL8 A;  1Q67 A;  2DX5 A;  2P0F A;  5I2S A;  3PG7 A;  2LKO A;  1FHW A;  2OQB A;  4ZRI A;  1NI2 A;  4EMO A;  3SO6 A;  1QC6 A;  2DKP A;  2E2X A;  3TVV A;  2KIG A;  3UZT A;  1PLS A;  4F7U P;  3ODX A;  5IRS A;  2I5C A;  1ZYI A;  5J3T A;  1RJ2 A;  2D9W A;  4QJ3 B;  2K2J A;  2ELB A;  3U7D A;  2XQN M;  5HE1 A;  1BWN A;  1EVH A;  3HK0 A;  4GN1 A;  5JLJ B;  1FAO A;  2L1C A;  4KVG B;  1KZG A;  5C5B B;  1EAZ A;  2W2W A;  1WGQ A;  5D27 A;  4PQ0 A;  2FJL A;  2J0J A;  3GYP A;  2L2I A;  4OSN A;  2KUQ A;  2DKQ A;  2ELA A;  5HE3 A;  2V76 A;  1TQZ A;  4L6E A;  3NSU A;  1I7A A;  2RVB B;  3ODW A;  3AU4 A;  2RUK B;  4KHB A;  3HSA A;  3D8F A;  1EF1 A;  1PFJ A;  1SHC A;  3AU5 A;  2I1J A;  2Z0P A;  1XR0 B;  4WJ7 A;  1W1D A;  2RGN B;  1M7R A;  1DRO A;  2IFS A;  1X11 A;  4DIX A;  4GOU A;  2HE7 A;  2G35 A;  1K5G B;  4HDO A;  1B55 A;  2Z0O A;  5JHG A;  1K5D B;  4HAT B;  2W2X C;  4BBK A;  3QIJ A;  5JP4 A;  1XOD A;  1KI1 B;  1ZM0 A;  2YSZ A;  2QKL A;  2KGX B;  2MWN B;  2MDX A;  4HDQ A;  1MK7 B;  3ULB A;  2DFK A;  2EMT A;  2UZS A;  1ZVR A;  2ADZ A;  1V5M A;  4F7H A;  3VIA A;  5KCV A;  3A58 A;  4D6W A;  1QQG A;  2YVC A;  1MKE A;  2NBV A;  1X1G A;  3U12 A;  1J19 A;  1MPH A;  5GOW B;  4A5K A;  3TCA A;  2UVM A;  1PMS A;  2X18 A;  4GXB A;  4MT7 A;  4CSQ A;  1XCG A;  2COC A;  3X23 A;  2COD A;  3BIN A;  4C0A A;  1ZSQ A;  4KHB B;  1X05 A;  4B6H A;  3OAN A;  3KY9 A;  3DXD A;  3OHM B;  4K17 A;  3QWM A;  3ZDT A;  3FSS A;  3WA0 A;  4QJ5 B;  4K2P A;  3CIK A;  1N3H A;  1FHX A;  1MK9 B;  2LOZ A;  2K8E A;  1GC6 A;  5I2M A;  1RRP B;  1U29 A;  4XWX A;  2N0Y A;  1AWE A;  1WGU A;  2BCJ A;  2DN6 A;  1GG3 A;  2YS3 A;  3P6A A;  3HQC A;  1EGX A;  2M38 A;  3KRX A;  1T77 A;  2COF A;  2K2U A;  3D8D A;  2J0K A;  2I5F A;  3D8E A;  3SUZ A;  4HHV A;  4DX8 A;  5D3X A;  1V89 A;  2P0H A;  5J3Y A;  2AEH A;  4GMV A; 
#chains in the Genus database with same CATH homology
 3NW8 A;  3HIE A;  4QJ3 B;  4KHB B;  4Z2M B;  3OHM B;  3A58 A;  5M4Y B;  3TW1 A;  2KIE A;  4DIX A;  4D6W A;  4GOU A;  4QJ4 B;  5LG4 B;  4KHA A;  3FSS A;  4KHB A;  3GYO A;  4GNK B;  4QJ5 B;  4IFS A;  3U12 A;  2NBV A;  2R2Y A;  2Z59 A;  4HSI A;  4PQ0 A;  2K49 A;  4KHO A;  2KR0 A;  2Z13 A;  4QXA B;  5I2S A;  3NWD A;  2K8E A;  2FJU B;  2RRF A;  3NWF A;  2ZKM X;  2GCL A;  3NWA A;  2YT2 A;  4IOY X;  4L1R A;  2Z14 A;  5I2M A;  4Z2N A;  3FVC A;  3TO1 A;  4OT1 A;  3TVV A;  4CSQ A;  2KIG A;  2Z4D A;  3GYP A;  2GUM A;  5IRS A;  2GCJ A;  4OSN A;  1ZYI A;  2KUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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