4OSNA

Crystal structure of engineered hcmv glycoprotein b domain ii
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
114
structure length
110
Chain Sequence
NEDLDEGIMVVYKRNGCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMSDSALDCVRDEAINKLQQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Envelope glycoprotein B
publication title Crystal structure of engineered HCMV glycoprotein B Domain II
rcsb
source organism Human cytomegalovirus
molecule tags Viral protein
total genus 29
structure length 110
sequence length 114
ec nomenclature
pdb deposition date 2014-02-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17416 Glycoprot_B_PH1 Herpesvirus Glycoprotein B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.100 Mainly Beta Roll PH-domain like PH-domain like 4osnA00
4HSIA 2GUMA 4L1RA 4OT1A 3NW8A 3NWAA 4OSNA 3NWDA 3NWFA 3FVCA
chains in the Genus database with same CATH superfamily
4KAXB 2DYQA 2P0DA 1N3HA 5EFXA 1XKEA 2DN6A 1MKEA 4HAWB 2K49A 1NU2A 1X05A 2J0JA 2VSZA 2Y8FA 5D3YA 2N23A 2QKLA 3QIJA 3HIEA 4HDOA 5GOWB 4MY6A 4QJ4B 1LW3A 3TO1A 4PQ0A 1EF1A 4QJ5B 2D4QA 2DTCA 1V88A 5JHGA 1BWNA 2D10A 4OSNA 1FHWA 4IAPA 1T77A 2AL6A 1TQZA 3ODOA 4NSWA 2DHKA 2G35A 4KHBB 3D8FA 4MK0A 5HE3A 4EJNA 2YT1A 3F0WA 2YT0A 5HE1A 3N7CA 3ODXA 1M7EA 3BJIA 4HB3B 2FJLA 2YRYA 1KZGA 4TKNA 4QJ3B 3GYOA 5J3TA 2DKQA 4EKUA 2RNRB 1UNRA 2UVMA 1EVHA 4PNKA 4WJ7A 5JP4A 4A6FB 3A8QA 3PVWA 2FJUB 3ULBA 2ROVA 2D9XA 1DDWA 4HB4B 1UPQA 4HHVA 4KHOA 4D0NB 3A8PA 3NWFA 4DIXA 3PVUA 3QBVB 3PG7A 3VIAA 2CAYA 3HQCA 4WVFB 3AJ4A 1XODA 4YONA 2EC1A 4QXAB 1X11A 4DBBA 1KI1B 1ZYIA 2DX5A 5CLQB 3A58A 1U5FA 5C16A 2Z4DA 5C79A 5C6RA 3TFMA 3P7ZA 5DHFB 3UZTA 2N0YA 3PVLA 2MFQA 4DX90 4GZUA 1K5DB 3BINA 1U27A 2DA0A 2ADZA 3SUZA 2KIGA 2GS0A 5M4YB 4F7HA 1NI2A 4EMOA 1OY2A 1TXDA 1MIZB 1E5WA 1IRSA 2YS5A 3ML4A 1Y19B 4K17A 4TYZA 1ZC4B 2P0HA 3G9WA 3B77A 2J0MA 1W1GA 2CY4A 1PMSA 3WYFB 1AWEA 3KRWA 5J3QA 2K00A 2Z0OA 4Y94A 1DDVA 1V5UA 2R2YA 2DHIA 2I5FA 1DROA 3HK0A 1V89A 1WJ1A 1X1GA 2GJYA 2UZRA 2KR0A 1J19A 4HB2B 4HSIA 3MPXA 5HE0A 5HE2A 4GMVA 3FM8C 1UNPA 4CHJA 1MK9B 2Z14A 4ZRJA 3M1IB 5LONB 4GNKB 2ZKMX 3VOQA 2D2QA 4HB0B 1QC6A 2ZPYA 2LOZA 2I1KA 1LB1A 1FAOA 4ZRKA 1U5DA 1FHOA 1MPHA 2UZSA 4A6KA 5D3XA 2RRFA 4GOUA 1I7AA 2RUKB 4GN1A 5KQ4A 1RJ2A 1W1DA 2P0FA 1ZSQA 5I2MA 3PSCA 2OQBA 2Z59A 2YT2A 2EMSA 5KCVA 2J0KA 1Y5OA 5C5BA 2ELBA 3ULCA 3IVFA 4F7GA 3O96A 2YS1A 3MDBC 4GXBA 2DFKA 1B55A 2LOXA 2CY5A 3U7DA 1H10A 1WI1A 1FB8A 5D3WA 3HSAA 1UNQA 4GMXB 2CODA 5DHAB 4F7UP 2YSZA 2V76A 1DDMA 1Z87A 2LKOA 2RLOA 4BBKA 2NBVA 2EJ8A 1FGZA 3AU5A 4K2OA 3TW1A 3ZDTA 4H8SA 2L1CA 2DLWA 5L81A 3SO6A 1PLSA 1AQCA 3NWDA 5FI0A 2ELAA 1MI1A 3ODWA 4L1RA 4ZRIA 2M14A 2BCJA 1J0WA 1OMWA 3WA0A 3CXBB 2Q13A 1ZM0A 4Z2MB 1X1FA 4NY0A 1U5EA 1QQGA 5D27A 1ZC3B 2RGNB 4B6HA 4HATB 4HAYB 1RRPB 1XD4A 5DIFB 2MWNB 2D9ZA 2PZ1A 1UEFA 4K81A 4CYEA 2GUMA 2MDXA 4KHBA 4WSFA 4HAXB 4IFSA 1U5GA 5I2SA 2LULA 3PZDA 3RCPA 3DXEA 4OT1A 1FHXA 1H4RA 2GCLA 2HTHB 1MK7B 2E2XA 2L2IA 3PEGA 3SNHA 1X86A 4D6WA 1SGHA 1GG3A 2Y7BA 2DYNA 3FEHA 3TCAA 2DX1A 4A6FA 2YVCA 3U8ZA 2D9WA 1ZVRA 5DH9B 3KSYA 4L6EA 1OQNA 1U29A 1ISNA 2YS3A 4IOYX 1MIXA 2VKIA 4HDQA 3SV1A 5FI1A 2K2JA 3KY9A 5JLJB 2ROZB 1Q67A 4YL8A 2W2WA 2COFA 2LYDA 5LOPB 4DXAB 1FOEA 1XX0A 1WJMA 2KIEA 3QWMA 3CIKA 2YF0A 3X23A 2D11A 2P8VA 3OANA 2J59M 1TJ6A 4HAZB 1WGQA 2M38A 2NZ8B 3FVCA 1SHCA 1V5MA 4CSQA 2R09A 3HW2B 1KZ7A 2JP2A 1XR0B 4HAUB 4GPTB 2X18A 1WGUA 1K5GB 1V5PA 4MT7A 2K2UA 2XQNM 1P6SA 3LJUX 4DX8A 2RSGA 5CLLB 2KUPA 2Z0QA 3U12A 3ZVRA 4CHMA 3V5WA 1PFJA 1I2HA 1WVHA 3DXDA 3DXCA 2KUQA 3P6AA 5D3VA 5J3YA 2DHJA 2Z13A 1BTNA 3SYXA 3TVVA 2I5CA 3F5RA 3AU4A 4A6HA 4C0AA 2D9VA 2LG1A 3KZ1A 3NSUA 2NMBA 2H7DA 1BTKA 4P7IA 2GCJA 1BAKA 3OHMB 2R0DA 2Y8GA 1V61A 3NWAA 1UPRA 2MKRA 2RVBB 1NTYA 2OTXA 2D9YA 5IRSA 2COAA 3NW8A 1P3RA 3D8DA 2Z0PA 3PP2A 5DI9B 2AEHA 1NTVA 1EGXA 2I1JA 2COCA 3GYPA 2KGXB 4KVGB 3T06A 1DYNA 3KRXA 3FSSA 5C5BB 1MAIA 4Z2NA 2IYBA 4K2PA 5JHHA 2HE7A 2K8EA 2QKMA 1U2BA 1M7RA 3DCXA 2W2XD 4A5KA 1EAZA 1GC6A 1W1HA 1FGYA 4HAVB 2IFSA 2KCJA 2CRFA 5KQ1A 4KHAA 3A98B 1WG7A 4XWXA 2EMTA 3D8EA 2W2XC 2VRWB 1GC7A 1XCGA 2H7EA 2DKPA 1P5TA 5LG4B 1DBHA
chains in the Genus database with same CATH topology
2GUMA 2Z59A 2YT2A 4KHBA 4GNKB 2ZKMX 4KHBB 4IFSA 4KHOA 4IOYX 5I2SA 4Z2MB 2NBVA 4DIXA 3NWFA 2R2YA 3GYPA 2GCJA 3FSSA 4Z2NA 3OHMB 2K49A 4OT1A 3U12A 3NWAA 4KHAA 3TW1A 2KIGA 2GCLA 3FVCA 2KR0A 4HSIA 3HIEA 4CSQA 5M4YB 5IRSA 4QXAB 2KUQA 4QJ3B 2K8EA 3GYOA 3NW8A 4QJ4B 4D6WA 2Z13A 3NWDA 2RRFA 4GOUA 3TO1A 1ZYIA 3TVVA 4PQ0A 3A58A 4L1RA 4QJ5B 2Z4DA 4OSNA 2Z14A 2FJUB 5I2MA 5LG4B 2KIEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HSI A;  2GUM A;  4L1R A;  4OT1 A;  3NW8 A;  3NWA A;  4OSN A;  3NWD A;  3NWF A;  3FVC A; 
#chains in the Genus database with same CATH topology
 4KAX B;  2DYQ A;  2P0D A;  1N3H A;  5EFX A;  1XKE A;  2DN6 A;  1MKE A;  4HAW B;  2K49 A;  1NU2 A;  1X05 A;  2J0J A;  2VSZ A;  2Y8F A;  5D3Y A;  2N23 A;  2QKL A;  3QIJ A;  3HIE A;  4HDO A;  5GOW B;  4MY6 A;  4QJ4 B;  1LW3 A;  3TO1 A;  4PQ0 A;  1EF1 A;  4QJ5 B;  2D4Q A;  2DTC A;  1V88 A;  5JHG A;  1BWN A;  2D10 A;  4OSN A;  1FHW A;  4IAP A;  1T77 A;  2AL6 A;  1TQZ A;  3ODO A;  4NSW A;  2DHK A;  2G35 A;  4KHB B;  3D8F A;  4MK0 A;  5HE3 A;  4EJN A;  2YT1 A;  3F0W A;  2YT0 A;  5HE1 A;  3N7C A;  3ODX A;  1M7E A;  3BJI A;  4HB3 B;  2FJL A;  2YRY A;  1KZG A;  4TKN A;  4QJ3 B;  3GYO A;  5J3T A;  2DKQ A;  4EKU A;  2RNR B;  1UNR A;  2UVM A;  1EVH A;  4PNK A;  4WJ7 A;  5JP4 A;  4A6F B;  3A8Q A;  3PVW A;  2FJU B;  3ULB A;  2ROV A;  2D9X A;  1DDW A;  4HB4 B;  1UPQ A;  4HHV A;  4KHO A;  4D0N B;  3A8P A;  3NWF A;  4DIX A;  3PVU A;  3QBV B;  3PG7 A;  3VIA A;  2CAY A;  3HQC A;  4WVF B;  3AJ4 A;  1XOD A;  4YON A;  2EC1 A;  4QXA B;  1X11 A;  4DBB A;  1KI1 B;  1ZYI A;  2DX5 A;  5CLQ B;  3A58 A;  1U5F A;  5C16 A;  2Z4D A;  5C79 A;  5C6R A;  3TFM A;  3P7Z A;  5DHF B;  3UZT A;  2N0Y A;  3PVL A;  2MFQ A;  4DX9 0;  4GZU A;  1K5D B;  3BIN A;  1U27 A;  2DA0 A;  2ADZ A;  3SUZ A;  2KIG A;  2GS0 A;  5M4Y B;  4F7H A;  1NI2 A;  4EMO A;  1OY2 A;  1TXD A;  1MIZ B;  1E5W A;  1IRS A;  2YS5 A;  3ML4 A;  1Y19 B;  4K17 A;  4TYZ A;  1ZC4 B;  2P0H A;  3G9W A;  3B77 A;  2J0M A;  1W1G A;  2CY4 A;  1PMS A;  3WYF B;  1AWE A;  3KRW A;  5J3Q A;  2K00 A;  2Z0O A;  4Y94 A;  1DDV A;  1V5U A;  2R2Y A;  2DHI A;  2I5F A;  1DRO A;  3HK0 A;  1V89 A;  1WJ1 A;  1X1G A;  2GJY A;  2UZR A;  2KR0 A;  1J19 A;  4HB2 B;  4HSI A;  3MPX A;  5HE0 A;  5HE2 A;  4GMV A;  3FM8 C;  1UNP A;  4CHJ A;  1MK9 B;  2Z14 A;  4ZRJ A;  3M1I B;  5LON B;  4GNK B;  2ZKM X;  3VOQ A;  2D2Q A;  4HB0 B;  1QC6 A;  2ZPY A;  2LOZ A;  2I1K A;  1LB1 A;  1FAO A;  4ZRK A;  1U5D A;  1FHO A;  1MPH A;  2UZS A;  4A6K A;  5D3X A;  2RRF A;  4GOU A;  1I7A A;  2RUK B;  4GN1 A;  5KQ4 A;  1RJ2 A;  1W1D A;  2P0F A;  1ZSQ A;  5I2M A;  3PSC A;  2OQB A;  2Z59 A;  2YT2 A;  2EMS A;  5KCV A;  2J0K A;  1Y5O A;  5C5B A;  2ELB A;  3ULC A;  3IVF A;  4F7G A;  3O96 A;  2YS1 A;  3MDB C;  4GXB A;  2DFK A;  1B55 A;  2LOX A;  2CY5 A;  3U7D A;  1H10 A;  1WI1 A;  1FB8 A;  5D3W A;  3HSA A;  1UNQ A;  4GMX B;  2COD A;  5DHA B;  4F7U P;  2YSZ A;  2V76 A;  1DDM A;  1Z87 A;  2LKO A;  2RLO A;  4BBK A;  2NBV A;  2EJ8 A;  1FGZ A;  3AU5 A;  4K2O A;  3TW1 A;  3ZDT A;  4H8S A;  2L1C A;  2DLW A;  5L81 A;  3SO6 A;  1PLS A;  1AQC A;  3NWD A;  5FI0 A;  2ELA A;  1MI1 A;  3ODW A;  4L1R A;  4ZRI A;  2M14 A;  2BCJ A;  1J0W A;  1OMW A;  3WA0 A;  3CXB B;  2Q13 A;  1ZM0 A;  4Z2M B;  1X1F A;  4NY0 A;  1U5E A;  1QQG A;  5D27 A;  1ZC3 B;  2RGN B;  4B6H A;  4HAT B;  4HAY B;  1RRP B;  1XD4 A;  5DIF B;  2MWN B;  2D9Z A;  2PZ1 A;  1UEF A;  4K81 A;  4CYE A;  2GUM A;  2MDX A;  4KHB A;  4WSF A;  4HAX B;  4IFS A;  1U5G A;  5I2S A;  2LUL A;  3PZD A;  3RCP A;  3DXE A;  4OT1 A;  1FHX A;  1H4R A;  2GCL A;  2HTH B;  1MK7 B;  2E2X A;  2L2I A;  3PEG A;  3SNH A;  1X86 A;  4D6W A;  1SGH A;  1GG3 A;  2Y7B A;  2DYN A;  3FEH A;  3TCA A;  2DX1 A;  4A6F A;  2YVC A;  3U8Z A;  2D9W A;  1ZVR A;  5DH9 B;  3KSY A;  4L6E A;  1OQN A;  1U29 A;  1ISN A;  2YS3 A;  4IOY X;  1MIX A;  2VKI A;  4HDQ A;  3SV1 A;  5FI1 A;  2K2J A;  3KY9 A;  5JLJ B;  2ROZ B;  1Q67 A;  4YL8 A;  2W2W A;  2COF A;  2LYD A;  5LOP B;  4DXA B;  1FOE A;  1XX0 A;  1WJM A;  2KIE A;  3QWM A;  3CIK A;  2YF0 A;  3X23 A;  2D11 A;  2P8V A;  3OAN A;  2J59 M;  1TJ6 A;  4HAZ B;  1WGQ A;  2M38 A;  2NZ8 B;  3FVC A;  1SHC A;  1V5M A;  4CSQ A;  2R09 A;  3HW2 B;  1KZ7 A;  2JP2 A;  1XR0 B;  4HAU B;  4GPT B;  2X18 A;  1WGU A;  1K5G B;  1V5P A;  4MT7 A;  2K2U A;  2XQN M;  1P6S A;  3LJU X;  4DX8 A;  2RSG A;  5CLL B;  2KUP A;  2Z0Q A;  3U12 A;  3ZVR A;  4CHM A;  3V5W A;  1PFJ A;  1I2H A;  1WVH A;  3DXD A;  3DXC A;  2KUQ A;  3P6A A;  5D3V A;  5J3Y A;  2DHJ A;  2Z13 A;  1BTN A;  3SYX A;  3TVV A;  2I5C A;  3F5R A;  3AU4 A;  4A6H A;  4C0A A;  2D9V A;  2LG1 A;  3KZ1 A;  3NSU A;  2NMB A;  2H7D A;  1BTK A;  4P7I A;  2GCJ A;  1BAK A;  3OHM B;  2R0D A;  2Y8G A;  1V61 A;  3NWA A;  1UPR A;  2MKR A;  2RVB B;  1NTY A;  2OTX A;  2D9Y A;  5IRS A;  2COA A;  3NW8 A;  1P3R A;  3D8D A;  2Z0P A;  3PP2 A;  5DI9 B;  2AEH A;  1NTV A;  1EGX A;  2I1J A;  2COC A;  3GYP A;  2KGX B;  4KVG B;  3T06 A;  1DYN A;  3KRX A;  3FSS A;  5C5B B;  1MAI A;  4Z2N A;  2IYB A;  4K2P A;  5JHH A;  2HE7 A;  2K8E A;  2QKM A;  1U2B A;  1M7R A;  3DCX A;  2W2X D;  4A5K A;  1EAZ A;  1GC6 A;  1W1H A;  1FGY A;  4HAV B;  2IFS A;  2KCJ A;  2CRF A;  5KQ1 A;  4KHA A;  3A98 B;  1WG7 A;  4XWX A;  2EMT A;  3D8E A;  2W2X C;  2VRW B;  1GC7 A;  1XCG A;  2H7E A;  2DKP A;  1P5T A;  5LG4 B;  1DBH A; 
#chains in the Genus database with same CATH homology
 2GUM A;  2Z59 A;  2YT2 A;  4KHB A;  4GNK B;  2ZKM X;  4KHB B;  4IFS A;  4KHO A;  4IOY X;  5I2S A;  4Z2M B;  2NBV A;  4DIX A;  3NWF A;  2R2Y A;  3GYP A;  2GCJ A;  3FSS A;  4Z2N A;  3OHM B;  2K49 A;  4OT1 A;  3U12 A;  3NWA A;  4KHA A;  3TW1 A;  2KIG A;  2GCL A;  3FVC A;  2KR0 A;  4HSI A;  3HIE A;  4CSQ A;  5M4Y B;  5IRS A;  4QXA B;  2KUQ A;  4QJ3 B;  2K8E A;  3GYO A;  3NW8 A;  4QJ4 B;  4D6W A;  2Z13 A;  3NWD A;  2RRF A;  4GOU A;  3TO1 A;  1ZYI A;  3TVV A;  4PQ0 A;  3A58 A;  4L1R A;  4QJ5 B;  2Z4D A;  4OSN A;  2Z14 A;  2FJU B;  5I2M A;  5LG4 B;  2KIE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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