5M4YB

Crystal structure of the sec3/sso2 complex at 2.20 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
175
structure length
173
Chain Sequence
SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
molecule keywords Protein SSO2
total genus 50
structure length 173
sequence length 175
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2016-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5m4yB00
5LG4B 3HIEA 3A58A 5M4YB
chains in the Genus database with same CATH superfamily
1X1GA 3PP2A 2Z0QA 2YRYA 1UEFA 5DHAB 2K49A 3U7DA 2EMSA 1H4RA 3D8DA 2ELAA 3SUZA 2P8VA 2KUQA 1BAKA 4YONA 4QXAB 4BBKA 3FVCA 1J19A 2K2UA 2DKQA 1P3RA 2Z59A 1TQZA 4DX90 2D9XA 2D9YA 2DA0A 2HTHB 1V5UA 2RNRB 2RVBB 3PSCA 2K00A 2MFQA 3GYOA 3KRXA 1NU2A 1ZM0A 1K5DB 5JHGA 1T77A 2CY5A 2BCJA 4HDOA 2COFA 2IYBA 2J0KA 3OANA 1UNQA 3KY9A 1Q67A 2DYNA 5FI0A 2RGNB 3PVLA 3ULCA 1MIZB 2I1JA 4WSFA 3FM8C 1OQNA 2DTCA 4KAXB 2VRWB 2NBVA 3PEGA 3AU4A 1WGQA 2P0HA 1DYNA 2M38A 1U5FA 4PQ0A 1MK7B 2H7EA 1V5PA 1MIXA 1EGXA 2DKPA 4HB0B 2NMBA 1PLSA 1NI2A 4CSQA 1WI1A 4ZRJA 4GXBA 1XKEA 2UZRA 3G9WA 4PNKA 2QKLA 4IFSA 2HE7A 1Y19B 2YSZA 2D10A 2D9WA 5EFXA 4CHJA 1W1GA 4HHVA 1ZC3B 1UPQA 1GC6A 1U29A 1V88A 5J3TA 2YF0A 1U5GA 3HK0A 1U5EA 3BJIA 4DIXA 1W1DA 2JP2A 4WJ7A 3UZTA 5M4YB 2KGXB 3A98B 5DH9B 2Z0OA 4L6EA 2DHKA 3N7CA 4HAVB 2LKOA 1IRSA 1Z87A 2D11A 2H7DA 5DIFB 4DBBA 1E5WA 2KCJA 2V76A 4QJ5B 1FHWA 2ADZA 4HDQA 2DFKA 3ULBA 5D27A 4GN1A 4HAWB 1FB8A 1V89A 2UVMA 1RRPB 1XCGA 5KQ1A 3TW1A 2RRFA 1PFJA 2ZKMX 1KZGA 3SV1A 2MKRA 3DXCA 2R09A 4NY0A 2D9ZA 5HE2A 3NWDA 4KVGB 4ZRIA 4Z2MB 4H8SA 3HW2B 3BINA 5HE3A 2DHIA 1QC6A 2X18A 3QIJA 1XR0B 2M14A 3DXDA 5J3QA 2Z13A 3A8QA 3D8FA 4DX8A 5C6RA 2K2JA 4F7GA 2D4QA 3AU5A 5I2MA 3HIEA 2YS5A 5C79A 3NSUA 1U5DA 4HAYB 3KSYA 5JLJB 2W2WA 3D8EA 3ODXA 2FJLA 2I5CA 3NW8A 4ZRKA 3QWMA 3U8ZA 4TYZA 4L1RA 4OT1A 1X05A 1WJ1A 5CLQB 1EAZA 4WVFB 3FEHA 1XODA 4KHBB 2R0DA 5CLLB 2ROZB 3U12A 2COAA 5FI1A 4F7UP 5LONB 1MKEA 1H10A 1X1FA 4GNKB 5D3WA 2AL6A 5JP4A 5I2SA 5C16A 4DXAB 3O96A 3PZDA 1PMSA 4F7HA 4XWXA 1U27A 3ODWA 1KI1B 4D6WA 3PVUA 4K2OA 3TO1A 4EJNA 4HAZB 1MPHA 2KUPA 2RUKB 5LG4B 3DXEA 4TKNA 3TCAA 3SYXA 5LOPB 4HB2B 4KHOA 4K2PA 1DDWA 2N0YA 1FHXA 1MAIA 1ISNA 2YS3A 2I1KA 4HAXB 4HB4B 2COCA 4HB3B 1X11A 5J3YA 5KQ4A 4D0NB 2GS0A 1FAOA 1WVHA 1LB1A 4KHAA 1ZSQA 2J0JA 3GYPA 2K8EA 3B77A 1ZYIA 1OY2A 3CXBB 2KIGA 2ZPYA 4A6KA 4GMVA 2W2XC 1B55A 2I5FA 1M7RA 5D3VA 1SGHA 5HE0A 2NZ8B 1J0WA 1M7EA 1X86A 4C0AA 5GOWB 3ODOA 2LYDA 4KHBA 2AEHA 2QKMA 1WJMA 3LJUX 1V5MA 3V5WA 1ZC4B 1QQGA 3MDBC 1NTVA 5DHFB 3ZDTA 5D3XA 2LOZA 3TFMA 2EJ8A 1DDVA 3MPXA 1I7AA 1EF1A 3CIKA 4HATB 1DROA 3DCXA 2ROVA 2KR0A 1BTNA 3A8PA 3IVFA 1U2BA 2GJYA 4NSWA 4EMOA 5DI9B 4Z2NA 4CHMA 3AJ4A 2MDXA 1OMWA 2R2YA 1AQCA 2N23A 1I2HA 2LULA 1MI1A 4QJ3B 1XX0A 1K5GB 1UPRA 2RLOA 1FOEA 2PZ1A 4OSNA 2KIEA 3FSSA 3T06A 4EKUA 1DDMA 4CYEA 2CODA 1EVHA 3PG7A 1AWEA 2YT1A 3VIAA 2DHJA 2ELBA 2DLWA 2YT0A 3P6AA 1W1HA 3P7ZA 1BTKA 2P0FA 2YT2A 1SHCA 1P5TA 4GOUA 5IRSA 4MY6A 2VKIA 2LOXA 1WGUA 4IOYX 4K17A 3SNHA 4A6FA 1KZ7A 3M1IB 2LG1A 4HAUB 2J59M 5HE1A 2GCLA 1UNRA 4K81A 3NWFA 4MT7A 2L2IA 2EC1A 1NTYA 1TJ6A 1FHOA 2DN6A 2GCJA 4GPTB 1ZVRA 3RCPA 5D3YA 1FGYA 1TXDA 2OQBA 2Y7BA 3QBVB 2G35A 2RSGA 1P6SA 2Z4DA 4YL8A 3SO6A 1LW3A 3HSAA 2GUMA 5JHHA 1N3HA 3X23A 5C5BA 1MK9B 4MK0A 2OTXA 2VSZA 5C5BB 2EMTA 1FGZA 2J0MA 4P7IA 3VOQA 2DX5A 1DBHA 2D9VA 3NWAA 4B6HA 1GG3A 4A6HA 4A5KA 2IFSA 2W2XD 4HSIA 2YVCA 2L1CA 3OHMB 2XQNM 3PVWA 2YS1A 2CAYA 2UZSA 3WYFB 3ML4A 2E2XA 4Y94A 2FJUB 2MWNB 3A58A 3KRWA 2Z0PA 3F0WA 3KZ1A 3ZVRA 4QJ4B 1RJ2A 1Y5OA 2P0DA 3HQCA 5L81A 3WA0A 1XD4A 1BWNA 2CRFA 2DX1A 2Q13A 1UNPA 2DYQA 1V61A 2Y8GA 4A6FB 3TVVA 4GMXB 4GZUA 2CY4A 2D2QA 2Y8FA 4IAPA 1WG7A 5KCVA 3F5RA 2Z14A 1GC7A
chains in the Genus database with same CATH topology
4QJ4B 3NW8A 2GUMA 2Z13A 4D6WA 3NWFA 4IFSA 2K49A 3GYOA 3TO1A 2GCJA 2KR0A 4L1RA 4OT1A 4KHBA 3TW1A 2RRFA 2NBVA 4Z2NA 2ZKMX 2YT2A 5LG4B 2Z14A 4KHAA 4KHBB 2R2YA 3NWAA 3GYPA 4GOUA 3U12A 2K8EA 2KUQA 3NWDA 4PQ0A 5IRSA 4QXAB 4Z2MB 4QJ5B 5I2MA 4HSIA 3FVCA 1ZYIA 4QJ3B 4DIXA 3HIEA 3TVVA 4IOYX 4KHOA 4GNKB 3OHMB 2KIGA 2Z4DA 4CSQA 5I2SA 2Z59A 4OSNA 5M4YB 2KIEA 3FSSA 2GCLA 2FJUB 3A58A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LG4 B;  3HIE A;  3A58 A;  5M4Y B; 
#chains in the Genus database with same CATH topology
 1X1G A;  3PP2 A;  2Z0Q A;  2YRY A;  1UEF A;  5DHA B;  2K49 A;  3U7D A;  2EMS A;  1H4R A;  3D8D A;  2ELA A;  3SUZ A;  2P8V A;  2KUQ A;  1BAK A;  4YON A;  4QXA B;  4BBK A;  3FVC A;  1J19 A;  2K2U A;  2DKQ A;  1P3R A;  2Z59 A;  1TQZ A;  4DX9 0;  2D9X A;  2D9Y A;  2DA0 A;  2HTH B;  1V5U A;  2RNR B;  2RVB B;  3PSC A;  2K00 A;  2MFQ A;  3GYO A;  3KRX A;  1NU2 A;  1ZM0 A;  1K5D B;  5JHG A;  1T77 A;  2CY5 A;  2BCJ A;  4HDO A;  2COF A;  2IYB A;  2J0K A;  3OAN A;  1UNQ A;  3KY9 A;  1Q67 A;  2DYN A;  5FI0 A;  2RGN B;  3PVL A;  3ULC A;  1MIZ B;  2I1J A;  4WSF A;  3FM8 C;  1OQN A;  2DTC A;  4KAX B;  2VRW B;  2NBV A;  3PEG A;  3AU4 A;  1WGQ A;  2P0H A;  1DYN A;  2M38 A;  1U5F A;  4PQ0 A;  1MK7 B;  2H7E A;  1V5P A;  1MIX A;  1EGX A;  2DKP A;  4HB0 B;  2NMB A;  1PLS A;  1NI2 A;  4CSQ A;  1WI1 A;  4ZRJ A;  4GXB A;  1XKE A;  2UZR A;  3G9W A;  4PNK A;  2QKL A;  4IFS A;  2HE7 A;  1Y19 B;  2YSZ A;  2D10 A;  2D9W A;  5EFX A;  4CHJ A;  1W1G A;  4HHV A;  1ZC3 B;  1UPQ A;  1GC6 A;  1U29 A;  1V88 A;  5J3T A;  2YF0 A;  1U5G A;  3HK0 A;  1U5E A;  3BJI A;  4DIX A;  1W1D A;  2JP2 A;  4WJ7 A;  3UZT A;  5M4Y B;  2KGX B;  3A98 B;  5DH9 B;  2Z0O A;  4L6E A;  2DHK A;  3N7C A;  4HAV B;  2LKO A;  1IRS A;  1Z87 A;  2D11 A;  2H7D A;  5DIF B;  4DBB A;  1E5W A;  2KCJ A;  2V76 A;  4QJ5 B;  1FHW A;  2ADZ A;  4HDQ A;  2DFK A;  3ULB A;  5D27 A;  4GN1 A;  4HAW B;  1FB8 A;  1V89 A;  2UVM A;  1RRP B;  1XCG A;  5KQ1 A;  3TW1 A;  2RRF A;  1PFJ A;  2ZKM X;  1KZG A;  3SV1 A;  2MKR A;  3DXC A;  2R09 A;  4NY0 A;  2D9Z A;  5HE2 A;  3NWD A;  4KVG B;  4ZRI A;  4Z2M B;  4H8S A;  3HW2 B;  3BIN A;  5HE3 A;  2DHI A;  1QC6 A;  2X18 A;  3QIJ A;  1XR0 B;  2M14 A;  3DXD A;  5J3Q A;  2Z13 A;  3A8Q A;  3D8F A;  4DX8 A;  5C6R A;  2K2J A;  4F7G A;  2D4Q A;  3AU5 A;  5I2M A;  3HIE A;  2YS5 A;  5C79 A;  3NSU A;  1U5D A;  4HAY B;  3KSY A;  5JLJ B;  2W2W A;  3D8E A;  3ODX A;  2FJL A;  2I5C A;  3NW8 A;  4ZRK A;  3QWM A;  3U8Z A;  4TYZ A;  4L1R A;  4OT1 A;  1X05 A;  1WJ1 A;  5CLQ B;  1EAZ A;  4WVF B;  3FEH A;  1XOD A;  4KHB B;  2R0D A;  5CLL B;  2ROZ B;  3U12 A;  2COA A;  5FI1 A;  4F7U P;  5LON B;  1MKE A;  1H10 A;  1X1F A;  4GNK B;  5D3W A;  2AL6 A;  5JP4 A;  5I2S A;  5C16 A;  4DXA B;  3O96 A;  3PZD A;  1PMS A;  4F7H A;  4XWX A;  1U27 A;  3ODW A;  1KI1 B;  4D6W A;  3PVU A;  4K2O A;  3TO1 A;  4EJN A;  4HAZ B;  1MPH A;  2KUP A;  2RUK B;  5LG4 B;  3DXE A;  4TKN A;  3TCA A;  3SYX A;  5LOP B;  4HB2 B;  4KHO A;  4K2P A;  1DDW A;  2N0Y A;  1FHX A;  1MAI A;  1ISN A;  2YS3 A;  2I1K A;  4HAX B;  4HB4 B;  2COC A;  4HB3 B;  1X11 A;  5J3Y A;  5KQ4 A;  4D0N B;  2GS0 A;  1FAO A;  1WVH A;  1LB1 A;  4KHA A;  1ZSQ A;  2J0J A;  3GYP A;  2K8E A;  3B77 A;  1ZYI A;  1OY2 A;  3CXB B;  2KIG A;  2ZPY A;  4A6K A;  4GMV A;  2W2X C;  1B55 A;  2I5F A;  1M7R A;  5D3V A;  1SGH A;  5HE0 A;  2NZ8 B;  1J0W A;  1M7E A;  1X86 A;  4C0A A;  5GOW B;  3ODO A;  2LYD A;  4KHB A;  2AEH A;  2QKM A;  1WJM A;  3LJU X;  1V5M A;  3V5W A;  1ZC4 B;  1QQG A;  3MDB C;  1NTV A;  5DHF B;  3ZDT A;  5D3X A;  2LOZ A;  3TFM A;  2EJ8 A;  1DDV A;  3MPX A;  1I7A A;  1EF1 A;  3CIK A;  4HAT B;  1DRO A;  3DCX A;  2ROV A;  2KR0 A;  1BTN A;  3A8P A;  3IVF A;  1U2B A;  2GJY A;  4NSW A;  4EMO A;  5DI9 B;  4Z2N A;  4CHM A;  3AJ4 A;  2MDX A;  1OMW A;  2R2Y A;  1AQC A;  2N23 A;  1I2H A;  2LUL A;  1MI1 A;  4QJ3 B;  1XX0 A;  1K5G B;  1UPR A;  2RLO A;  1FOE A;  2PZ1 A;  4OSN A;  2KIE A;  3FSS A;  3T06 A;  4EKU A;  1DDM A;  4CYE A;  2COD A;  1EVH A;  3PG7 A;  1AWE A;  2YT1 A;  3VIA A;  2DHJ A;  2ELB A;  2DLW A;  2YT0 A;  3P6A A;  1W1H A;  3P7Z A;  1BTK A;  2P0F A;  2YT2 A;  1SHC A;  1P5T A;  4GOU A;  5IRS A;  4MY6 A;  2VKI A;  2LOX A;  1WGU A;  4IOY X;  4K17 A;  3SNH A;  4A6F A;  1KZ7 A;  3M1I B;  2LG1 A;  4HAU B;  2J59 M;  5HE1 A;  2GCL A;  1UNR A;  4K81 A;  3NWF A;  4MT7 A;  2L2I A;  2EC1 A;  1NTY A;  1TJ6 A;  1FHO A;  2DN6 A;  2GCJ A;  4GPT B;  1ZVR A;  3RCP A;  5D3Y A;  1FGY A;  1TXD A;  2OQB A;  2Y7B A;  3QBV B;  2G35 A;  2RSG A;  1P6S A;  2Z4D A;  4YL8 A;  3SO6 A;  1LW3 A;  3HSA A;  2GUM A;  5JHH A;  1N3H A;  3X23 A;  5C5B A;  1MK9 B;  4MK0 A;  2OTX A;  2VSZ A;  5C5B B;  2EMT A;  1FGZ A;  2J0M A;  4P7I A;  3VOQ A;  2DX5 A;  1DBH A;  2D9V A;  3NWA A;  4B6H A;  1GG3 A;  4A6H A;  4A5K A;  2IFS A;  2W2X D;  4HSI A;  2YVC A;  2L1C A;  3OHM B;  2XQN M;  3PVW A;  2YS1 A;  2CAY A;  2UZS A;  3WYF B;  3ML4 A;  2E2X A;  4Y94 A;  2FJU B;  2MWN B;  3A58 A;  3KRW A;  2Z0P A;  3F0W A;  3KZ1 A;  3ZVR A;  4QJ4 B;  1RJ2 A;  1Y5O A;  2P0D A;  3HQC A;  5L81 A;  3WA0 A;  1XD4 A;  1BWN A;  2CRF A;  2DX1 A;  2Q13 A;  1UNP A;  2DYQ A;  1V61 A;  2Y8G A;  4A6F B;  3TVV A;  4GMX B;  4GZU A;  2CY4 A;  2D2Q A;  2Y8F A;  4IAP A;  1WG7 A;  5KCV A;  3F5R A;  2Z14 A;  1GC7 A; 
#chains in the Genus database with same CATH homology
 4QJ4 B;  3NW8 A;  2GUM A;  2Z13 A;  4D6W A;  3NWF A;  4IFS A;  2K49 A;  3GYO A;  3TO1 A;  2GCJ A;  2KR0 A;  4L1R A;  4OT1 A;  4KHB A;  3TW1 A;  2RRF A;  2NBV A;  4Z2N A;  2ZKM X;  2YT2 A;  5LG4 B;  2Z14 A;  4KHA A;  4KHB B;  2R2Y A;  3NWA A;  3GYP A;  4GOU A;  3U12 A;  2K8E A;  2KUQ A;  3NWD A;  4PQ0 A;  5IRS A;  4QXA B;  4Z2M B;  4QJ5 B;  5I2M A;  4HSI A;  3FVC A;  1ZYI A;  4QJ3 B;  4DIX A;  3HIE A;  3TVV A;  4IOY X;  4KHO A;  4GNK B;  3OHM B;  2KIG A;  2Z4D A;  4CSQ A;  5I2S A;  2Z59 A;  4OSN A;  5M4Y B;  2KIE A;  3FSS A;  2GCL A;  2FJU B;  3A58 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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