5M4YB

Crystal structure of the sec3/sso2 complex at 2.20 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
175
structure length
173
Chain Sequence
SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Protein SSO2
publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
total genus 50
structure length 173
sequence length 175
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2016-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5m4yB00
3A58A 3HIEA 5LG4B 5M4YB
chains in the Genus database with same CATH superfamily
4IFSA 4F7GA 3ZDTA 4DXAB 4XWXA 2D11A 5FI0A 2I1KA 4GN1A 1UNPA 2D9XA 2COAA 2Y8FA 2D9YA 5D3WA 4CYEA 3M1IB 4OSNA 3P7ZA 2OTXA 4K2OA 2YS3A 2DTCA 1ZSQA 1Z87A 2DHKA 2I1JA 3BJIA 2KCJA 1Y5OA 4KAXB 4KHBA 1WJMA 5FI1A 3ULBA 3TCAA 3ZVRA 3WA0A 5HE1A 2D9WA 3O96A 1GC6A 2E2XA 4ZRIA 1U5DA 2I5FA 5J3YA 1FHWA 1W1HA 1KZGA 1K5GB 2LYDA 1UPQA 4DX8A 1SGHA 2D4QA 1MK9B 2YT0A 5DH9B 4EMOA 1OY2A 3D8FA 4H8SA 2K00A 2YSZA 1NTVA 4HAZB 4HAXB 3KRXA 3P6AA 4PQ0A 3BINA 1ZC3B 2W2XC 3DXEA 2GCLA 4EJNA 5HE0A 2NBVA 3HW2B 4A6HA 1V5UA 1ZC4B 5J3TA 3GYPA 3KRWA 1WGQA 5LG4B 2ZPYA 3FSSA 3FVCA 4HAYB 4OT1A 4CSQA 5D27A 2Z0QA 4GOUA 3OHMB 3AJ4A 5I2SA 4NY0A 3HQCA 2NZ8B 1MIXA 3DXCA 1MIZB 2RRFA 4IOYX 1X05A 3T06A 1XCGA 1DDWA 1P6SA 3D8EA 4DX90 3ML4A 1MK7B 3SV1A 4HAWB 4A6FB 1UNRA 3QWMA 4GZUA 2EMTA 5DHAB 2RVBB 2RGNB 2P0HA 4HDOA 4K2PA 2HTHB 4CHMA 1OQNA 2Z13A 2J0JA 5DI9B 2ZKMX 5C6RA 1RRPB 1N3HA 1XX0A 4L6EA 1P5TA 4F7UP 3B77A 1M7RA 4B6HA 1DBHA 5CLLB 5GOWB 5LONB 3A58A 5C5BA 1EGXA 1FHOA 2GUMA 2N0YA 2ELAA 2LG1A 3TW1A 1WJ1A 1V5MA 2KUQA 2D2QA 3HK0A 3HIEA 4WVFB 3ODWA 3V5WA 3IVFA 4HB4B 4HATB 2Z4DA 2CODA 1AWEA 2DKQA 2YS1A 1FGYA 4GPTB 4HAVB 1U5GA 1PFJA 3PP2A 1Q67A 2K2UA 2YRYA 2D9ZA 2LOXA 4ZRJA 3D8DA 2P8VA 1TXDA 4HSIA 2G35A 5D3VA 2M14A 2Z14A 2VSZA 2NMBA 5HE2A 2YF0A 4QXAB 2RSGA 4C0AA 2CY5A 1H4RA 2LKOA 4HB0B 1FB8A 4WJ7A 5EFXA 3UZTA 3QBVB 4HDQA 2HE7A 5LOPB 1LW3A 2DN6A 1EF1A 1P3RA 1PMSA 5D3YA 2LOZA 2JP2A 3NWFA 2ADZA 4DIXA 1V61A 1V89A 2KIEA 2YVCA 4D6WA 2GJYA 3WYFB 1GG3A 3N7CA 1QQGA 1XODA 3OANA 4EKUA 1OMWA 1MKEA 4KHBB 3SYXA 5C16A 2AL6A 2UZSA 4QJ4B 5J3QA 5JP4A 3A98B 2ROVA 3TVVA 1WI1A 2I5CA 3QIJA 1NI2A 3VIAA 5D3XA 4YONA 4Z2NA 4QJ5B 4TYZA 3PSCA 2IFSA 1XD4A 1DDMA 2Z0OA 2UVMA 3PG7A 1ISNA 3NWAA 2MWNB 4Y94A 2RLOA 2ROZB 4HHVA 3PVUA 2EJ8A 4MK0A 3G9WA 4KVGB 1GC7A 2Y7BA 1BAKA 3NW8A 3KY9A 3ULCA 2KR0A 3PVLA 2L2IA 2FJLA 1FHXA 4HB2B 5KQ4A 1W1GA 2EMSA 3U12A 2P0DA 3AU4A 3F0WA 2R09A 3SNHA 2EC1A 3DXDA 4L1RA 2UZRA 2W2XD 1U5FA 4NSWA 2DKPA 1J0WA 5DIFB 4HB3B 2DYQA 1V5PA 2R2YA 1UNQA 3ODXA 2D10A 1MAIA 3A8PA 1W1DA 2DHIA 5JHGA 1EAZA 2K49A 2MDXA 4KHAA 2OQBA 5L81A 2FJUB 1BWNA 1LB1A 2R0DA 3VOQA 4HAUB 4MT7A 1M7EA 1FOEA 2W2WA 2M38A 2YS5A 4TKNA 2DX5A 1NU2A 1RJ2A 2XQNM 1X86A 3SO6A 1T77A 1NTYA 2CY4A 3LJUX 4MY6A 2X18A 2YT2A 1WG7A 1U29A 3KSYA 2DHJA 2KUPA 2V76A 4A5KA 4GMVA 3AU5A 3DCXA 4GXBA 1AQCA 3TFMA 5M4YB 1UEFA 2N23A 3NSUA 4CHJA 4K81A 1E5WA 5CLQB 3PZDA 2Z0PA 5C5BB 1FGZA 1WGUA 2J0KA 1QC6A 1H10A 3FM8C 3FEHA 2VRWB 2K2JA 4A6FA 1DROA 4D0NB 1TJ6A 2AEHA 1UPRA 2K8EA 2H7EA 2VKIA 1BTNA 1KI1B 4KHOA 4IAPA 1ZVRA 2D9VA 4P7IA 3F5RA 2CRFA 2CAYA 1V88A 1IRSA 2DX1A 5JLJB 5C79A 2DA0A 4QJ3B 1BTKA 2RUKB 2YT1A 1KZ7A 1I7AA 5I2MA 5HE3A 2Y8GA 2Z59A 2COFA 4DBBA 5KQ1A 2MKRA 2DLWA 1X11A 2KGXB 1MI1A 4BBKA 2L1CA 2P0FA 1I2HA 1ZYIA 3X23A 5JHHA 4WSFA 3CIKA 2J0MA 1B55A 4K17A 1FAOA 1ZM0A 2MFQA 2J59M 3HSAA 3MDBC 3ODOA 1U5EA 1U27A 4A6KA 4F7HA 2GCJA 4ZRKA 5KCVA 2BCJA 4PNKA 1U2BA 1EVHA 5IRSA 3A8QA 5DHFB 3PVWA 2Q13A 3CXBB 2H7DA 1XKEA 4GMXB 2PZ1A 1XR0B 3PEGA 2GS0A 1X1FA 1DYNA 3SUZA 1WVHA 3TO1A 1K5DB 3NWDA 1SHCA 1Y19B 3MPXA 1MPHA 3RCPA 1X1GA 1DDVA 3GYOA 3U7DA 2KIGA 2LULA 3KZ1A 4GNKB 1TQZA 3U8ZA 2DYNA 2QKLA 2RNRB 4Z2MB 2COCA 1J19A 2QKMA 2ELBA 1PLSA 2IYBA 2DFKA 4YL8A
chains in the Genus database with same CATH topology
4IFSA 2Z14A 2GCLA 2RRFA 2KUQA 3TVVA 4IOYX 2NBVA 4QXAB 2YT2A 3NWFA 4DIXA 3GYPA 3HIEA 5LG4B 2K49A 1ZYIA 2Z13A 3NW8A 3FSSA 2Z4DA 4KHAA 4OSNA 2ZKMX 2KIEA 2KR0A 2FJUB 3TO1A 3NWDA 4QJ3B 4Z2NA 3FVCA 3U12A 4D6WA 4QJ5B 3GYOA 4OT1A 2KIGA 4L1RA 4CSQA 5M4YB 4KHBA 4GOUA 4GNKB 2K8EA 3A58A 3OHMB 5I2MA 5I2SA 2GUMA 2GCJA 3NWAA 4KHBB 4Z2MB 2Z59A 4HSIA 4PQ0A 4KHOA 2R2YA 3TW1A 5IRSA 4QJ4B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A58 A;  3HIE A;  5LG4 B;  5M4Y B; 
#chains in the Genus database with same CATH topology
 4IFS A;  4F7G A;  3ZDT A;  4DXA B;  4XWX A;  2D11 A;  5FI0 A;  2I1K A;  4GN1 A;  1UNP A;  2D9X A;  2COA A;  2Y8F A;  2D9Y A;  5D3W A;  4CYE A;  3M1I B;  4OSN A;  3P7Z A;  2OTX A;  4K2O A;  2YS3 A;  2DTC A;  1ZSQ A;  1Z87 A;  2DHK A;  2I1J A;  3BJI A;  2KCJ A;  1Y5O A;  4KAX B;  4KHB A;  1WJM A;  5FI1 A;  3ULB A;  3TCA A;  3ZVR A;  3WA0 A;  5HE1 A;  2D9W A;  3O96 A;  1GC6 A;  2E2X A;  4ZRI A;  1U5D A;  2I5F A;  5J3Y A;  1FHW A;  1W1H A;  1KZG A;  1K5G B;  2LYD A;  1UPQ A;  4DX8 A;  1SGH A;  2D4Q A;  1MK9 B;  2YT0 A;  5DH9 B;  4EMO A;  1OY2 A;  3D8F A;  4H8S A;  2K00 A;  2YSZ A;  1NTV A;  4HAZ B;  4HAX B;  3KRX A;  3P6A A;  4PQ0 A;  3BIN A;  1ZC3 B;  2W2X C;  3DXE A;  2GCL A;  4EJN A;  5HE0 A;  2NBV A;  3HW2 B;  4A6H A;  1V5U A;  1ZC4 B;  5J3T A;  3GYP A;  3KRW A;  1WGQ A;  5LG4 B;  2ZPY A;  3FSS A;  3FVC A;  4HAY B;  4OT1 A;  4CSQ A;  5D27 A;  2Z0Q A;  4GOU A;  3OHM B;  3AJ4 A;  5I2S A;  4NY0 A;  3HQC A;  2NZ8 B;  1MIX A;  3DXC A;  1MIZ B;  2RRF A;  4IOY X;  1X05 A;  3T06 A;  1XCG A;  1DDW A;  1P6S A;  3D8E A;  4DX9 0;  3ML4 A;  1MK7 B;  3SV1 A;  4HAW B;  4A6F B;  1UNR A;  3QWM A;  4GZU A;  2EMT A;  5DHA B;  2RVB B;  2RGN B;  2P0H A;  4HDO A;  4K2P A;  2HTH B;  4CHM A;  1OQN A;  2Z13 A;  2J0J A;  5DI9 B;  2ZKM X;  5C6R A;  1RRP B;  1N3H A;  1XX0 A;  4L6E A;  1P5T A;  4F7U P;  3B77 A;  1M7R A;  4B6H A;  1DBH A;  5CLL B;  5GOW B;  5LON B;  3A58 A;  5C5B A;  1EGX A;  1FHO A;  2GUM A;  2N0Y A;  2ELA A;  2LG1 A;  3TW1 A;  1WJ1 A;  1V5M A;  2KUQ A;  2D2Q A;  3HK0 A;  3HIE A;  4WVF B;  3ODW A;  3V5W A;  3IVF A;  4HB4 B;  4HAT B;  2Z4D A;  2COD A;  1AWE A;  2DKQ A;  2YS1 A;  1FGY A;  4GPT B;  4HAV B;  1U5G A;  1PFJ A;  3PP2 A;  1Q67 A;  2K2U A;  2YRY A;  2D9Z A;  2LOX A;  4ZRJ A;  3D8D A;  2P8V A;  1TXD A;  4HSI A;  2G35 A;  5D3V A;  2M14 A;  2Z14 A;  2VSZ A;  2NMB A;  5HE2 A;  2YF0 A;  4QXA B;  2RSG A;  4C0A A;  2CY5 A;  1H4R A;  2LKO A;  4HB0 B;  1FB8 A;  4WJ7 A;  5EFX A;  3UZT A;  3QBV B;  4HDQ A;  2HE7 A;  5LOP B;  1LW3 A;  2DN6 A;  1EF1 A;  1P3R A;  1PMS A;  5D3Y A;  2LOZ A;  2JP2 A;  3NWF A;  2ADZ A;  4DIX A;  1V61 A;  1V89 A;  2KIE A;  2YVC A;  4D6W A;  2GJY A;  3WYF B;  1GG3 A;  3N7C A;  1QQG A;  1XOD A;  3OAN A;  4EKU A;  1OMW A;  1MKE A;  4KHB B;  3SYX A;  5C16 A;  2AL6 A;  2UZS A;  4QJ4 B;  5J3Q A;  5JP4 A;  3A98 B;  2ROV A;  3TVV A;  1WI1 A;  2I5C A;  3QIJ A;  1NI2 A;  3VIA A;  5D3X A;  4YON A;  4Z2N A;  4QJ5 B;  4TYZ A;  3PSC A;  2IFS A;  1XD4 A;  1DDM A;  2Z0O A;  2UVM A;  3PG7 A;  1ISN A;  3NWA A;  2MWN B;  4Y94 A;  2RLO A;  2ROZ B;  4HHV A;  3PVU A;  2EJ8 A;  4MK0 A;  3G9W A;  4KVG B;  1GC7 A;  2Y7B A;  1BAK A;  3NW8 A;  3KY9 A;  3ULC A;  2KR0 A;  3PVL A;  2L2I A;  2FJL A;  1FHX A;  4HB2 B;  5KQ4 A;  1W1G A;  2EMS A;  3U12 A;  2P0D A;  3AU4 A;  3F0W A;  2R09 A;  3SNH A;  2EC1 A;  3DXD A;  4L1R A;  2UZR A;  2W2X D;  1U5F A;  4NSW A;  2DKP A;  1J0W A;  5DIF B;  4HB3 B;  2DYQ A;  1V5P A;  2R2Y A;  1UNQ A;  3ODX A;  2D10 A;  1MAI A;  3A8P A;  1W1D A;  2DHI A;  5JHG A;  1EAZ A;  2K49 A;  2MDX A;  4KHA A;  2OQB A;  5L81 A;  2FJU B;  1BWN A;  1LB1 A;  2R0D A;  3VOQ A;  4HAU B;  4MT7 A;  1M7E A;  1FOE A;  2W2W A;  2M38 A;  2YS5 A;  4TKN A;  2DX5 A;  1NU2 A;  1RJ2 A;  2XQN M;  1X86 A;  3SO6 A;  1T77 A;  1NTY A;  2CY4 A;  3LJU X;  4MY6 A;  2X18 A;  2YT2 A;  1WG7 A;  1U29 A;  3KSY A;  2DHJ A;  2KUP A;  2V76 A;  4A5K A;  4GMV A;  3AU5 A;  3DCX A;  4GXB A;  1AQC A;  3TFM A;  5M4Y B;  1UEF A;  2N23 A;  3NSU A;  4CHJ A;  4K81 A;  1E5W A;  5CLQ B;  3PZD A;  2Z0P A;  5C5B B;  1FGZ A;  1WGU A;  2J0K A;  1QC6 A;  1H10 A;  3FM8 C;  3FEH A;  2VRW B;  2K2J A;  4A6F A;  1DRO A;  4D0N B;  1TJ6 A;  2AEH A;  1UPR A;  2K8E A;  2H7E A;  2VKI A;  1BTN A;  1KI1 B;  4KHO A;  4IAP A;  1ZVR A;  2D9V A;  4P7I A;  3F5R A;  2CRF A;  2CAY A;  1V88 A;  1IRS A;  2DX1 A;  5JLJ B;  5C79 A;  2DA0 A;  4QJ3 B;  1BTK A;  2RUK B;  2YT1 A;  1KZ7 A;  1I7A A;  5I2M A;  5HE3 A;  2Y8G A;  2Z59 A;  2COF A;  4DBB A;  5KQ1 A;  2MKR A;  2DLW A;  1X11 A;  2KGX B;  1MI1 A;  4BBK A;  2L1C A;  2P0F A;  1I2H A;  1ZYI A;  3X23 A;  5JHH A;  4WSF A;  3CIK A;  2J0M A;  1B55 A;  4K17 A;  1FAO A;  1ZM0 A;  2MFQ A;  2J59 M;  3HSA A;  3MDB C;  3ODO A;  1U5E A;  1U27 A;  4A6K A;  4F7H A;  2GCJ A;  4ZRK A;  5KCV A;  2BCJ A;  4PNK A;  1U2B A;  1EVH A;  5IRS A;  3A8Q A;  5DHF B;  3PVW A;  2Q13 A;  3CXB B;  2H7D A;  1XKE A;  4GMX B;  2PZ1 A;  1XR0 B;  3PEG A;  2GS0 A;  1X1F A;  1DYN A;  3SUZ A;  1WVH A;  3TO1 A;  1K5D B;  3NWD A;  1SHC A;  1Y19 B;  3MPX A;  1MPH A;  3RCP A;  1X1G A;  1DDV A;  3GYO A;  3U7D A;  2KIG A;  2LUL A;  3KZ1 A;  4GNK B;  1TQZ A;  3U8Z A;  2DYN A;  2QKL A;  2RNR B;  4Z2M B;  2COC A;  1J19 A;  2QKM A;  2ELB A;  1PLS A;  2IYB A;  2DFK A;  4YL8 A; 
#chains in the Genus database with same CATH homology
 4IFS A;  2Z14 A;  2GCL A;  2RRF A;  2KUQ A;  3TVV A;  4IOY X;  2NBV A;  4QXA B;  2YT2 A;  3NWF A;  4DIX A;  3GYP A;  3HIE A;  5LG4 B;  2K49 A;  1ZYI A;  2Z13 A;  3NW8 A;  3FSS A;  2Z4D A;  4KHA A;  4OSN A;  2ZKM X;  2KIE A;  2KR0 A;  2FJU B;  3TO1 A;  3NWD A;  4QJ3 B;  4Z2N A;  3FVC A;  3U12 A;  4D6W A;  4QJ5 B;  3GYO A;  4OT1 A;  2KIG A;  4L1R A;  4CSQ A;  5M4Y B;  4KHB A;  4GOU A;  4GNK B;  2K8E A;  3A58 A;  3OHM B;  5I2M A;  5I2S A;  2GUM A;  2GCJ A;  3NWA A;  4KHB B;  4Z2M B;  2Z59 A;  4HSI A;  4PQ0 A;  4KHO A;  2R2Y A;  3TW1 A;  5IRS A;  4QJ4 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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