5M4YB

Crystal structure of the sec3/sso2 complex at 2.20 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
175
structure length
173
Chain Sequence
b'SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein SSO2
publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
total genus 50
structure length 173
sequence length 175
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2016-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5m4yB00
3A58A 3HIEA 5M4YB 5LG4B
chains in the Genus database with same CATH superfamily
2YT0A 3UZTA 2RSGA 1ZVRA 1QC6A 2KR0A 1DDVA 3PVWA 2L1CA 3NWDA 5JP4A 2ADZA 1FB8A 3GYOA 1U5DA 5L81A 5JHHA 2L2IA 4NY0A 2R2YA 4OT1A 5LOPB 5EFXA 4HHVA 5DIFB 1IRSA 1UNQA 2M14A 4BBKA 4EKUA 1ZC4B 2NZ8B 3P7ZA 2R09A 3QWMA 4K17A 4L6EA 1TXDA 2J0JA 1X11A 2GS0A 3SUZA 3MDBC 2P0FA 2VKIA 3PSCA 1P3RA 4L1RA 4A6KA 2D4QA 3M1IB 1T77A 1Z87A 1EVHA 1NTYA 1UNRA 2W2WA 3F5RA 1H4RA 2RGNB 4WJ7A 1DROA 3FEHA 2Z13A 3ULCA 1Y19B 1AQCA 3FVCA 3HIEA 1I2HA 5DH9B 2LKOA 3SNHA 5C5BA 4QJ5B 1WG7A 4YONA 2J0MA 4K2PA 2K00A 1FGYA 4WSFA 2H7EA 4DX90 4ZRIA 1FHOA 4MT7A 5J3TA 1MPHA 4HAYB 2I1JA 1ISNA 3ZVRA 4HDOA 1E5WA 1RRPB 2GCLA 3NSUA 4F7HA 2VRWB 4D6WA 4GMVA 2KIGA 5J3QA 2LG1A 2LYDA 1SHCA 4HB2B 2IFSA 5CLQB 5HE1A 1MAIA 1W1GA 1TJ6A 1MK7B 2CAYA 2K2JA 2UZRA 1XCGA 1W1DA 4TYZA 1U5EA 3PP2A 2EJ8A 3PVUA 3SO6A 4IFSA 2K2UA 3NWFA 2DLWA 3B77A 2ROZB 2KIEA 2ZKMX 1DYNA 1V5UA 2D2QA 1LB1A 1OY2A 1PMSA 2KGXB 2DA0A 1NI2A 4HDQA 3A98B 3HW2B 3N7CA 3P6AA 1OMWA 1V5PA 2DKQA 2YF0A 1X86A 5FI0A 4QJ3B 2CRFA 1GC6A 3A8PA 2K8EA 5LG4B 2ELAA 4CHMA 2N0YA 2EC1A 2HE7A 3LJUX 2XQNM 2ROVA 2YT1A 1H10A 3A8QA 5DHFB 1V5MA 4HSIA 3IVFA 5KQ4A 3KRWA 5C79A 1GC7A 4PNKA 2J0KA 2E2XA 1U2BA 2YVCA 1EF1A 4MK0A 3BJIA 2NBVA 4GPTB 2CY5A 5D3VA 1DBHA 2J59M 2G35A 1KI1B 2RUKB 2P0DA 2FJUB 1X1FA 3ULBA 3ML4A 3OHMB 2DFKA 1FGZA 2QKMA 5CLLB 3TVVA 3TO1A 3ODXA 2YRYA 5FI1A 3VIAA 1BTKA 1N3HA 4IOYX 2BCJA 2ZPYA 4CHJA 4XWXA 1Y5OA 2D9XA 2Z4DA 1WI1A 4HAUB 5LONB 4HATB 5D3XA 3ODOA 3WYFB 5C6RA 3U7DA 4GN1A 3TW1A 1WVHA 2P0HA 3KSYA 3SYXA 3TFMA 5C5BB 3MPXA 1MIZB 1OQNA 1V88A 3FSSA 4H8SA 5C16A 1PLSA 4P7IA 3DXCA 3PEGA 1X05A 2RLOA 1U27A 1FOEA 3AU5A 2GJYA 4DXAB 2DX5A 1MKEA 2MDXA 3AJ4A 2P8VA 4ZRKA 2R0DA 2Y8GA 2K49A 2V76A 4GZUA 2DHKA 1M7EA 2D9YA 2RNRB 2Z0OA 4GXBA 1BTNA 1LW3A 3DCXA 2DHJA 2M38A 2CODA 3CXBB 4EMOA 1GG3A 3VOQA 2OQBA 2Z0QA 4Y94A 4GOUA 1U5FA 2DX1A 2D9WA 2EMSA 5JLJB 2KCJA 1AWEA 1K5GB 3PVLA 3KRXA 2ELBA 2D10A 1ZYIA 1J0WA 1WGQA 1RJ2A 1FHXA 3O96A 3A58A 2CY4A 2Z14A 1QQGA 4CYEA 4A6HA 2FJLA 4K2OA 5GOWB 5D3WA 2EMTA 2H7DA 2DTCA 2YS5A 4CSQA 4IAPA 3ZDTA 4NSWA 1ZSQA 1Q67A 1NU2A 2AL6A 3U12A 2IYBA 1J19A 3DXEA 2DYNA 1XKEA 3BINA 5HE0A 3RCPA 1BWNA 2UVMA 2JP2A 4HAZB 4WVFB 1W1HA 4GMXB 2QKLA 4DX8A 1V61A 2YS3A 2DN6A 3HK0A 3NWAA 3TCAA 5JHGA 2OTXA 4HB0B 4YL8A 2COFA 2Z59A 4F7UP 2COCA 2I5CA 5D3YA 4A6FB 4A6FA 1WGUA 2GCJA 1SGHA 1P6SA 5HE3A 1K5DB 4KHBA 4KHBB 3SV1A 3DXDA 1XX0A 2NMBA 4DBBA 2Y7BA 1B55A 2MWNB 3OANA 3PZDA 1EAZA 1BAKA 1WJ1A 4TKNA 3QIJA 1DDWA 5KCVA 2YS1A 1V89A 4DIXA 3FM8C 3ODWA 3G9WA 2Z0PA 1U5GA 3HSAA 2W2XD 5DI9B 2DKPA 1MK9B 2PZ1A 3PG7A 2MKRA 2D9VA 4PQ0A 5IRSA 1UEFA 2N23A 3U8ZA 1P5TA 1MIXA 3KZ1A 2DHIA 2LOZA 4QXAB 5DHAB 1FHWA 3HQCA 5I2MA 4MY6A 1UPQA 3D8EA 3WA0A 1EGXA 2MFQA 2D9ZA 4KAXB 2AEHA 4ZRJA 3F0WA 3NW8A 4D0NB 5J3YA 2KUPA 1KZ7A 2I1KA 4K81A 1XD4A 1I7AA 2YT2A 4Z2MB 2Y8FA 4EJNA 5KQ1A 3QBVB 1NTVA 4QJ4B 5M4YB 4HAVB 2Q13A 3AU4A 4Z2NA 4GNKB 2VSZA 1ZC3B 1U29A 2LULA 2HTHB 1KZGA 2W2XC 1M7RA 4KHOA 4B6HA 1UPRA 2D11A 4HB3B 4OSNA 2DYQA 3V5WA 3T06A 4HAXB 4KHAA 1XODA 2RRFA 3CIKA 2COAA 2RVBB 2I5FA 2KUQA 2X18A 2LOXA 5HE2A 3D8FA 1PFJA 1ZM0A 1WJMA 1XR0B 1UNPA 4A5KA 5D27A 2UZSA 4HAWB 5I2SA 1DDMA 1TQZA 4C0AA 1X1GA 1FAOA 4HB4B 2YSZA 3D8DA 3GYPA 3KY9A 4KVGB 2GUMA 3X23A 4F7GA 1MI1A
chains in the Genus database with same CATH topology
3OHMB 2Z59A 3U12A 5I2MA 2K49A 2GCJA 4KHOA 3TVVA 3TO1A 4QJ5B 4DIXA 4HSIA 2KR0A 4KHBA 1ZYIA 3FSSA 4KHBB 4OSNA 4IOYX 3NWDA 4L1RA 5I2SA 3NW8A 3A58A 3GYOA 4IFSA 2YT2A 2Z4DA 4Z2MB 2GCLA 3NWFA 2NBVA 2Z14A 4QJ3B 2R2YA 2K8EA 4KHAA 4QJ4B 4OT1A 5LG4B 2KIEA 5M4YB 2RRFA 4PQ0A 2ZKMX 3NWAA 5IRSA 4GOUA 2Z13A 4CSQA 3GYPA 4Z2NA 3FVCA 4GNKB 2FJUB 3HIEA 2GUMA 2KUQA 3TW1A 4D6WA 2KIGA 4QXAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A58 A;  3HIE A;  5M4Y B;  5LG4 B; 
#chains in the Genus database with same CATH topology
 2YT0 A;  3UZT A;  2RSG A;  1ZVR A;  1QC6 A;  2KR0 A;  1DDV A;  3PVW A;  2L1C A;  3NWD A;  5JP4 A;  2ADZ A;  1FB8 A;  3GYO A;  1U5D A;  5L81 A;  5JHH A;  2L2I A;  4NY0 A;  2R2Y A;  4OT1 A;  5LOP B;  5EFX A;  4HHV A;  5DIF B;  1IRS A;  1UNQ A;  2M14 A;  4BBK A;  4EKU A;  1ZC4 B;  2NZ8 B;  3P7Z A;  2R09 A;  3QWM A;  4K17 A;  4L6E A;  1TXD A;  2J0J A;  1X11 A;  2GS0 A;  3SUZ A;  3MDB C;  2P0F A;  2VKI A;  3PSC A;  1P3R A;  4L1R A;  4A6K A;  2D4Q A;  3M1I B;  1T77 A;  1Z87 A;  1EVH A;  1NTY A;  1UNR A;  2W2W A;  3F5R A;  1H4R A;  2RGN B;  4WJ7 A;  1DRO A;  3FEH A;  2Z13 A;  3ULC A;  1Y19 B;  1AQC A;  3FVC A;  3HIE A;  1I2H A;  5DH9 B;  2LKO A;  3SNH A;  5C5B A;  4QJ5 B;  1WG7 A;  4YON A;  2J0M A;  4K2P A;  2K00 A;  1FGY A;  4WSF A;  2H7E A;  4DX9 0;  4ZRI A;  1FHO A;  4MT7 A;  5J3T A;  1MPH A;  4HAY B;  2I1J A;  1ISN A;  3ZVR A;  4HDO A;  1E5W A;  1RRP B;  2GCL A;  3NSU A;  4F7H A;  2VRW B;  4D6W A;  4GMV A;  2KIG A;  5J3Q A;  2LG1 A;  2LYD A;  1SHC A;  4HB2 B;  2IFS A;  5CLQ B;  5HE1 A;  1MAI A;  1W1G A;  1TJ6 A;  1MK7 B;  2CAY A;  2K2J A;  2UZR A;  1XCG A;  1W1D A;  4TYZ A;  1U5E A;  3PP2 A;  2EJ8 A;  3PVU A;  3SO6 A;  4IFS A;  2K2U A;  3NWF A;  2DLW A;  3B77 A;  2ROZ B;  2KIE A;  2ZKM X;  1DYN A;  1V5U A;  2D2Q A;  1LB1 A;  1OY2 A;  1PMS A;  2KGX B;  2DA0 A;  1NI2 A;  4HDQ A;  3A98 B;  3HW2 B;  3N7C A;  3P6A A;  1OMW A;  1V5P A;  2DKQ A;  2YF0 A;  1X86 A;  5FI0 A;  4QJ3 B;  2CRF A;  1GC6 A;  3A8P A;  2K8E A;  5LG4 B;  2ELA A;  4CHM A;  2N0Y A;  2EC1 A;  2HE7 A;  3LJU X;  2XQN M;  2ROV A;  2YT1 A;  1H10 A;  3A8Q A;  5DHF B;  1V5M A;  4HSI A;  3IVF A;  5KQ4 A;  3KRW A;  5C79 A;  1GC7 A;  4PNK A;  2J0K A;  2E2X A;  1U2B A;  2YVC A;  1EF1 A;  4MK0 A;  3BJI A;  2NBV A;  4GPT B;  2CY5 A;  5D3V A;  1DBH A;  2J59 M;  2G35 A;  1KI1 B;  2RUK B;  2P0D A;  2FJU B;  1X1F A;  3ULB A;  3ML4 A;  3OHM B;  2DFK A;  1FGZ A;  2QKM A;  5CLL B;  3TVV A;  3TO1 A;  3ODX A;  2YRY A;  5FI1 A;  3VIA A;  1BTK A;  1N3H A;  4IOY X;  2BCJ A;  2ZPY A;  4CHJ A;  4XWX A;  1Y5O A;  2D9X A;  2Z4D A;  1WI1 A;  4HAU B;  5LON B;  4HAT B;  5D3X A;  3ODO A;  3WYF B;  5C6R A;  3U7D A;  4GN1 A;  3TW1 A;  1WVH A;  2P0H A;  3KSY A;  3SYX A;  3TFM A;  5C5B B;  3MPX A;  1MIZ B;  1OQN A;  1V88 A;  3FSS A;  4H8S A;  5C16 A;  1PLS A;  4P7I A;  3DXC A;  3PEG A;  1X05 A;  2RLO A;  1U27 A;  1FOE A;  3AU5 A;  2GJY A;  4DXA B;  2DX5 A;  1MKE A;  2MDX A;  3AJ4 A;  2P8V A;  4ZRK A;  2R0D A;  2Y8G A;  2K49 A;  2V76 A;  4GZU A;  2DHK A;  1M7E A;  2D9Y A;  2RNR B;  2Z0O A;  4GXB A;  1BTN A;  1LW3 A;  3DCX A;  2DHJ A;  2M38 A;  2COD A;  3CXB B;  4EMO A;  1GG3 A;  3VOQ A;  2OQB A;  2Z0Q A;  4Y94 A;  4GOU A;  1U5F A;  2DX1 A;  2D9W A;  2EMS A;  5JLJ B;  2KCJ A;  1AWE A;  1K5G B;  3PVL A;  3KRX A;  2ELB A;  2D10 A;  1ZYI A;  1J0W A;  1WGQ A;  1RJ2 A;  1FHX A;  3O96 A;  3A58 A;  2CY4 A;  2Z14 A;  1QQG A;  4CYE A;  4A6H A;  2FJL A;  4K2O A;  5GOW B;  5D3W A;  2EMT A;  2H7D A;  2DTC A;  2YS5 A;  4CSQ A;  4IAP A;  3ZDT A;  4NSW A;  1ZSQ A;  1Q67 A;  1NU2 A;  2AL6 A;  3U12 A;  2IYB A;  1J19 A;  3DXE A;  2DYN A;  1XKE A;  3BIN A;  5HE0 A;  3RCP A;  1BWN A;  2UVM A;  2JP2 A;  4HAZ B;  4WVF B;  1W1H A;  4GMX B;  2QKL A;  4DX8 A;  1V61 A;  2YS3 A;  2DN6 A;  3HK0 A;  3NWA A;  3TCA A;  5JHG A;  2OTX A;  4HB0 B;  4YL8 A;  2COF A;  2Z59 A;  4F7U P;  2COC A;  2I5C A;  5D3Y A;  4A6F B;  4A6F A;  1WGU A;  2GCJ A;  1SGH A;  1P6S A;  5HE3 A;  1K5D B;  4KHB A;  4KHB B;  3SV1 A;  3DXD A;  1XX0 A;  2NMB A;  4DBB A;  2Y7B A;  1B55 A;  2MWN B;  3OAN A;  3PZD A;  1EAZ A;  1BAK A;  1WJ1 A;  4TKN A;  3QIJ A;  1DDW A;  5KCV A;  2YS1 A;  1V89 A;  4DIX A;  3FM8 C;  3ODW A;  3G9W A;  2Z0P A;  1U5G A;  3HSA A;  2W2X D;  5DI9 B;  2DKP A;  1MK9 B;  2PZ1 A;  3PG7 A;  2MKR A;  2D9V A;  4PQ0 A;  5IRS A;  1UEF A;  2N23 A;  3U8Z A;  1P5T A;  1MIX A;  3KZ1 A;  2DHI A;  2LOZ A;  4QXA B;  5DHA B;  1FHW A;  3HQC A;  5I2M A;  4MY6 A;  1UPQ A;  3D8E A;  3WA0 A;  1EGX A;  2MFQ A;  2D9Z A;  4KAX B;  2AEH A;  4ZRJ A;  3F0W A;  3NW8 A;  4D0N B;  5J3Y A;  2KUP A;  1KZ7 A;  2I1K A;  4K81 A;  1XD4 A;  1I7A A;  2YT2 A;  4Z2M B;  2Y8F A;  4EJN A;  5KQ1 A;  3QBV B;  1NTV A;  4QJ4 B;  5M4Y B;  4HAV B;  2Q13 A;  3AU4 A;  4Z2N A;  4GNK B;  2VSZ A;  1ZC3 B;  1U29 A;  2LUL A;  2HTH B;  1KZG A;  2W2X C;  1M7R A;  4KHO A;  4B6H A;  1UPR A;  2D11 A;  4HB3 B;  4OSN A;  2DYQ A;  3V5W A;  3T06 A;  4HAX B;  4KHA A;  1XOD A;  2RRF A;  3CIK A;  2COA A;  2RVB B;  2I5F A;  2KUQ A;  2X18 A;  2LOX A;  5HE2 A;  3D8F A;  1PFJ A;  1ZM0 A;  1WJM A;  1XR0 B;  1UNP A;  4A5K A;  5D27 A;  2UZS A;  4HAW B;  5I2S A;  1DDM A;  1TQZ A;  4C0A A;  1X1G A;  1FAO A;  4HB4 B;  2YSZ A;  3D8D A;  3GYP A;  3KY9 A;  4KVG B;  2GUM A;  3X23 A;  4F7G A;  1MI1 A; 
#chains in the Genus database with same CATH homology
 3OHM B;  2Z59 A;  3U12 A;  5I2M A;  2K49 A;  2GCJ A;  4KHO A;  3TVV A;  3TO1 A;  4QJ5 B;  4DIX A;  4HSI A;  2KR0 A;  4KHB A;  1ZYI A;  3FSS A;  4KHB B;  4OSN A;  4IOY X;  3NWD A;  4L1R A;  5I2S A;  3NW8 A;  3A58 A;  3GYO A;  4IFS A;  2YT2 A;  2Z4D A;  4Z2M B;  2GCL A;  3NWF A;  2NBV A;  2Z14 A;  4QJ3 B;  2R2Y A;  2K8E A;  4KHA A;  4QJ4 B;  4OT1 A;  5LG4 B;  2KIE A;  5M4Y B;  2RRF A;  4PQ0 A;  2ZKM X;  3NWA A;  5IRS A;  4GOU A;  2Z13 A;  4CSQ A;  3GYP A;  4Z2N A;  3FVC A;  4GNK B;  2FJU B;  3HIE A;  2GUM A;  2KUQ A;  3TW1 A;  4D6W A;  2KIG A;  4QXA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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