5M4YB

Crystal structure of the sec3/sso2 complex at 2.20 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
175
structure length
173
Chain Sequence
SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
molecule keywords Protein SSO2
total genus 50
structure length 173
sequence length 175
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2016-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5m4yB00
5M4YB 5LG4B 3HIEA 3A58A
chains in the Genus database with same CATH superfamily
1BWNA 3KSYA 2D10A 3CXBB 2D2QA 1I7AA 1U5DA 3AU5A 2YSZA 3T06A 4HAZB 3PVUA 1TXDA 2P8VA 5D3VA 2YT1A 1X05A 2DYNA 2EMSA 2P0HA 1ZVRA 2DX1A 4GMXB 4DIXA 5KQ1A 5LONB 2UZSA 2VKIA 5KCVA 1GC7A 2MDXA 1DDMA 1KI1B 1OY2A 4D6WA 1XODA 2KUPA 3GYOA 2K8EA 1XCGA 3P6AA 1K5GB 2KUQA 1E5WA 1U29A 2DX5A 3ZDTA 1QC6A 1P5TA 2FJLA 3PP2A 1BTKA 3DXEA 3VOQA 4QJ4B 1NTYA 3MDBC 1PMSA 1U5FA 4ZRIA 2YF0A 3NSUA 1V61A 4NSWA 2D9WA 4HAUB 3HW2B 3OANA 3FM8C 1ZYIA 1DROA 4A6FB 1GG3A 5JP4A 4PNKA 4DX90 3KRWA 2Z59A 1WG7A 1MK9B 3QBVB 2RNRB 4HB3B 3FVCA 2M14A 3DXDA 2OQBA 3TVVA 2W2XC 1SHCA 2LG1A 4QJ5B 2Z14A 3PVLA 1M7RA 4P7IA 4XWXA 2LKOA 3D8FA 4H8SA 2NMBA 4B6HA 4HAYB 2ADZA 2L1CA 1W1HA 1WI1A 4WJ7A 3SNHA 2J0MA 1BTNA 2GS0A 3G9WA 2N0YA 2W2XD 4HAXB 5C5BB 2RGNB 1ISNA 3LJUX 5C79A 4PQ0A 2KGXB 3SUZA 4TYZA 4GN1A 5D3XA 2YRYA 2Z0QA 3PVWA 3QIJA 4KHBA 2DKQA 3P7ZA 4GPTB 1IRSA 2DN6A 5LOPB 1WJMA 1M7EA 2HE7A 1DDWA 4CSQA 2I5CA 1UNPA 4Z2MB 2J59M 2H7DA 5FI0A 4C0AA 3IVFA 2PZ1A 2EJ8A 2COFA 2DHJA 1MI1A 3TW1A 3QWMA 3NWDA 2YS3A 1OQNA 1WVHA 2D11A 2FJUB 5HE3A 1DBHA 4HB4B 1P3RA 4K2PA 4KVGB 4QXAB 5C6RA 1Z87A 4A6FA 1NI2A 1W1DA 2D9VA 2LULA 4BBKA 4CHJA 2RVBB 5L81A 3TCAA 2LYDA 3KRXA 4EMOA 4Z2NA 3ODXA 2COAA 2ELBA 3FSSA 2YS1A 3WYFB 4MK0A 3F5RA 2G35A 4F7HA 1XD4A 1RRPB 2R2YA 5KQ4A 1U27A 2MWNB 2YT0A 2RUKB 2R09A 5DI9B 1EAZA 1NTVA 4HATB 3AJ4A 1XKEA 5M4YB 4IAPA 3SYXA 4EJNA 1J19A 4Y94A 4KHBB 2DHKA 1MPHA 3KZ1A 1H4RA 3A8QA 3NWAA 5HE1A 1UNRA 3ML4A 1T77A 4EKUA 2I5FA 4K2OA 5D3YA 1V5UA 3RCPA 4HSIA 1PLSA 2D9ZA 1U2BA 3U12A 2BCJA 4HB2B 4HB0B 2I1KA 5FI1A 2L2IA 5JHHA 2K49A 3M1IB 2JP2A 5LG4B 4A5KA 1PFJA 2QKMA 3SV1A 5J3TA 2ZKMX 2Y8GA 2J0JA 3FEHA 1V5PA 2KCJA 4HDOA 3ZVRA 4MT7A 1WGQA 1BAKA 1AQCA 5EFXA 1UEFA 2KR0A 4YL8A 3X23A 1MKEA 2D9YA 1ZSQA 2DFKA 2YT2A 2QKLA 3MPXA 1V88A 3ODOA 2K00A 1FHOA 1Q67A 5HE2A 2EC1A 5J3QA 3UZTA 4IFSA 2DYQA 3ODWA 2VSZA 5C5BA 2D9XA 2EMTA 2LOXA 5I2SA 2KIEA 4CYEA 2ELAA 2YVCA 5GOWB 3KY9A 3HIEA 2NZ8B 2LOZA 1WGUA 3TFMA 4DBBA 1Y5OA 4HHVA 2CAYA 4MY6A 1RJ2A 5JLJB 2Z0PA 2CRFA 4OSNA 1GC6A 2NBVA 3PSCA 3D8DA 4KHAA 2COCA 2D4QA 1W1GA 2MKRA 2YS5A 4GZUA 3TO1A 1KZ7A 1EF1A 3HSAA 1X1FA 4KAXB 2DHIA 2E2XA 1MIXA 2DTCA 1NU2A 3DXCA 4GMVA 4A6KA 5I2MA 1X11A 2UVMA 5DHFB 1N3HA 2Z0OA 5CLQB 5JHGA 3F0WA 2OTXA 1FOEA 1FHXA 3U8ZA 2CODA 2XQNM 1B55A 3BJIA 2VRWB 4HAWB 3NWFA 2GCLA 5D3WA 2CY4A 2RLOA 3ULBA 1TQZA 3SO6A 4GOUA 2V76A 2Z4DA 1EVHA 1FAOA 3D8EA 4GXBA 2P0FA 4QJ3B 4DXAB 2DA0A 1DDVA 2Z13A 3HQCA 2GCJA 4TKNA 2RSGA 4IOYX 1LW3A 4ZRJA 3CIKA 1V89A 1ZM0A 1FHWA 4A6HA 2M38A 1ZC3B 3A98B 1OMWA 2ZPYA 1X86A 5IRSA 1I2HA 1XX0A 1WJ1A 1UPQA 1X1GA 2R0DA 3BINA 2Y7BA 2Q13A 1TJ6A 3PG7A 4HDQA 1H10A 2DLWA 3NW8A 1V5MA 2GJYA 1UPRA 3V5WA 1EGXA 2GUMA 5DHAB 1Y19B 3A8PA 3B77A 3A58A 3DCXA 2P0DA 3N7CA 4WVFB 4OT1A 3ULCA 4L6EA 5D27A 2J0KA 3AU4A 2IYBA 1ZC4B 2W2WA 4NY0A 2AEHA 2I1JA 2RRFA 4D0NB 4KHOA 1P6SA 5HE0A 2KIGA 1MIZB 2K2JA 5DIFB 2Y8FA 2ROZB 4K81A 5J3YA 3VIAA 1DYNA 1FB8A 1FGYA 2IFSA 1UNQA 1U5GA 2UZRA 2ROVA 2MFQA 1K5DB 4HAVB 2DKPA 5CLLB 4WSFA 4CHMA 4ZRKA 1J0WA 1QQGA 1U5EA 4DX8A 2AL6A 3GYPA 1MK7B 5DH9B 4YONA 1MAIA 1FGZA 4F7GA 3O96A 4GNKB 3WA0A 2N23A 2CY5A 4F7UP 3HK0A 3OHMB 3PEGA 1AWEA 2X18A 1XR0B 3PZDA 2HTHB 5C16A 2H7EA 4K17A 4L1RA 1KZGA 1SGHA 3U7DA 1LB1A 2K2UA
chains in the Genus database with same CATH topology
4QJ3B 3GYOA 5I2SA 2GUMA 2K8EA 2KIGA 2KR0A 2KIEA 2Z13A 3TO1A 2KUQA 2GCJA 4IOYX 2Z59A 4QXAB 4CSQA 4HSIA 4Z2MB 4GNKB 3NWFA 3HIEA 4QJ4B 5M4YB 3A58A 3U12A 3FVCA 2YT2A 2GCLA 3TVVA 3TW1A 2K49A 4OT1A 5LG4B 4KHBB 3OHMB 4PQ0A 4OSNA 3NWDA 4QJ5B 2Z14A 5IRSA 5I2MA 4Z2NA 4DIXA 2ZKMX 4GOUA 3FSSA 2NBVA 4IFSA 4L1RA 3NWAA 2RRFA 4KHAA 2Z4DA 1ZYIA 4KHBA 3GYPA 4KHOA 4D6WA 2FJUB 2R2YA 3NW8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M4Y B;  5LG4 B;  3HIE A;  3A58 A; 
#chains in the Genus database with same CATH topology
 1BWN A;  3KSY A;  2D10 A;  3CXB B;  2D2Q A;  1I7A A;  1U5D A;  3AU5 A;  2YSZ A;  3T06 A;  4HAZ B;  3PVU A;  1TXD A;  2P8V A;  5D3V A;  2YT1 A;  1X05 A;  2DYN A;  2EMS A;  2P0H A;  1ZVR A;  2DX1 A;  4GMX B;  4DIX A;  5KQ1 A;  5LON B;  2UZS A;  2VKI A;  5KCV A;  1GC7 A;  2MDX A;  1DDM A;  1KI1 B;  1OY2 A;  4D6W A;  1XOD A;  2KUP A;  3GYO A;  2K8E A;  1XCG A;  3P6A A;  1K5G B;  2KUQ A;  1E5W A;  1U29 A;  2DX5 A;  3ZDT A;  1QC6 A;  1P5T A;  2FJL A;  3PP2 A;  1BTK A;  3DXE A;  3VOQ A;  4QJ4 B;  1NTY A;  3MDB C;  1PMS A;  1U5F A;  4ZRI A;  2YF0 A;  3NSU A;  1V61 A;  4NSW A;  2D9W A;  4HAU B;  3HW2 B;  3OAN A;  3FM8 C;  1ZYI A;  1DRO A;  4A6F B;  1GG3 A;  5JP4 A;  4PNK A;  4DX9 0;  3KRW A;  2Z59 A;  1WG7 A;  1MK9 B;  3QBV B;  2RNR B;  4HB3 B;  3FVC A;  2M14 A;  3DXD A;  2OQB A;  3TVV A;  2W2X C;  1SHC A;  2LG1 A;  4QJ5 B;  2Z14 A;  3PVL A;  1M7R A;  4P7I A;  4XWX A;  2LKO A;  3D8F A;  4H8S A;  2NMB A;  4B6H A;  4HAY B;  2ADZ A;  2L1C A;  1W1H A;  1WI1 A;  4WJ7 A;  3SNH A;  2J0M A;  1BTN A;  2GS0 A;  3G9W A;  2N0Y A;  2W2X D;  4HAX B;  5C5B B;  2RGN B;  1ISN A;  3LJU X;  5C79 A;  4PQ0 A;  2KGX B;  3SUZ A;  4TYZ A;  4GN1 A;  5D3X A;  2YRY A;  2Z0Q A;  3PVW A;  3QIJ A;  4KHB A;  2DKQ A;  3P7Z A;  4GPT B;  1IRS A;  2DN6 A;  5LOP B;  1WJM A;  1M7E A;  2HE7 A;  1DDW A;  4CSQ A;  2I5C A;  1UNP A;  4Z2M B;  2J59 M;  2H7D A;  5FI0 A;  4C0A A;  3IVF A;  2PZ1 A;  2EJ8 A;  2COF A;  2DHJ A;  1MI1 A;  3TW1 A;  3QWM A;  3NWD A;  2YS3 A;  1OQN A;  1WVH A;  2D11 A;  2FJU B;  5HE3 A;  1DBH A;  4HB4 B;  1P3R A;  4K2P A;  4KVG B;  4QXA B;  5C6R A;  1Z87 A;  4A6F A;  1NI2 A;  1W1D A;  2D9V A;  2LUL A;  4BBK A;  4CHJ A;  2RVB B;  5L81 A;  3TCA A;  2LYD A;  3KRX A;  4EMO A;  4Z2N A;  3ODX A;  2COA A;  2ELB A;  3FSS A;  2YS1 A;  3WYF B;  4MK0 A;  3F5R A;  2G35 A;  4F7H A;  1XD4 A;  1RRP B;  2R2Y A;  5KQ4 A;  1U27 A;  2MWN B;  2YT0 A;  2RUK B;  2R09 A;  5DI9 B;  1EAZ A;  1NTV A;  4HAT B;  3AJ4 A;  1XKE A;  5M4Y B;  4IAP A;  3SYX A;  4EJN A;  1J19 A;  4Y94 A;  4KHB B;  2DHK A;  1MPH A;  3KZ1 A;  1H4R A;  3A8Q A;  3NWA A;  5HE1 A;  1UNR A;  3ML4 A;  1T77 A;  4EKU A;  2I5F A;  4K2O A;  5D3Y A;  1V5U A;  3RCP A;  4HSI A;  1PLS A;  2D9Z A;  1U2B A;  3U12 A;  2BCJ A;  4HB2 B;  4HB0 B;  2I1K A;  5FI1 A;  2L2I A;  5JHH A;  2K49 A;  3M1I B;  2JP2 A;  5LG4 B;  4A5K A;  1PFJ A;  2QKM A;  3SV1 A;  5J3T A;  2ZKM X;  2Y8G A;  2J0J A;  3FEH A;  1V5P A;  2KCJ A;  4HDO A;  3ZVR A;  4MT7 A;  1WGQ A;  1BAK A;  1AQC A;  5EFX A;  1UEF A;  2KR0 A;  4YL8 A;  3X23 A;  1MKE A;  2D9Y A;  1ZSQ A;  2DFK A;  2YT2 A;  2QKL A;  3MPX A;  1V88 A;  3ODO A;  2K00 A;  1FHO A;  1Q67 A;  5HE2 A;  2EC1 A;  5J3Q A;  3UZT A;  4IFS A;  2DYQ A;  3ODW A;  2VSZ A;  5C5B A;  2D9X A;  2EMT A;  2LOX A;  5I2S A;  2KIE A;  4CYE A;  2ELA A;  2YVC A;  5GOW B;  3KY9 A;  3HIE A;  2NZ8 B;  2LOZ A;  1WGU A;  3TFM A;  4DBB A;  1Y5O A;  4HHV A;  2CAY A;  4MY6 A;  1RJ2 A;  5JLJ B;  2Z0P A;  2CRF A;  4OSN A;  1GC6 A;  2NBV A;  3PSC A;  3D8D A;  4KHA A;  2COC A;  2D4Q A;  1W1G A;  2MKR A;  2YS5 A;  4GZU A;  3TO1 A;  1KZ7 A;  1EF1 A;  3HSA A;  1X1F A;  4KAX B;  2DHI A;  2E2X A;  1MIX A;  2DTC A;  1NU2 A;  3DXC A;  4GMV A;  4A6K A;  5I2M A;  1X11 A;  2UVM A;  5DHF B;  1N3H A;  2Z0O A;  5CLQ B;  5JHG A;  3F0W A;  2OTX A;  1FOE A;  1FHX A;  3U8Z A;  2COD A;  2XQN M;  1B55 A;  3BJI A;  2VRW B;  4HAW B;  3NWF A;  2GCL A;  5D3W A;  2CY4 A;  2RLO A;  3ULB A;  1TQZ A;  3SO6 A;  4GOU A;  2V76 A;  2Z4D A;  1EVH A;  1FAO A;  3D8E A;  4GXB A;  2P0F A;  4QJ3 B;  4DXA B;  2DA0 A;  1DDV A;  2Z13 A;  3HQC A;  2GCJ A;  4TKN A;  2RSG A;  4IOY X;  1LW3 A;  4ZRJ A;  3CIK A;  1V89 A;  1ZM0 A;  1FHW A;  4A6H A;  2M38 A;  1ZC3 B;  3A98 B;  1OMW A;  2ZPY A;  1X86 A;  5IRS A;  1I2H A;  1XX0 A;  1WJ1 A;  1UPQ A;  1X1G A;  2R0D A;  3BIN A;  2Y7B A;  2Q13 A;  1TJ6 A;  3PG7 A;  4HDQ A;  1H10 A;  2DLW A;  3NW8 A;  1V5M A;  2GJY A;  1UPR A;  3V5W A;  1EGX A;  2GUM A;  5DHA B;  1Y19 B;  3A8P A;  3B77 A;  3A58 A;  3DCX A;  2P0D A;  3N7C A;  4WVF B;  4OT1 A;  3ULC A;  4L6E A;  5D27 A;  2J0K A;  3AU4 A;  2IYB A;  1ZC4 B;  2W2W A;  4NY0 A;  2AEH A;  2I1J A;  2RRF A;  4D0N B;  4KHO A;  1P6S A;  5HE0 A;  2KIG A;  1MIZ B;  2K2J A;  5DIF B;  2Y8F A;  2ROZ B;  4K81 A;  5J3Y A;  3VIA A;  1DYN A;  1FB8 A;  1FGY A;  2IFS A;  1UNQ A;  1U5G A;  2UZR A;  2ROV A;  2MFQ A;  1K5D B;  4HAV B;  2DKP A;  5CLL B;  4WSF A;  4CHM A;  4ZRK A;  1J0W A;  1QQG A;  1U5E A;  4DX8 A;  2AL6 A;  3GYP A;  1MK7 B;  5DH9 B;  4YON A;  1MAI A;  1FGZ A;  4F7G A;  3O96 A;  4GNK B;  3WA0 A;  2N23 A;  2CY5 A;  4F7U P;  3HK0 A;  3OHM B;  3PEG A;  1AWE A;  2X18 A;  1XR0 B;  3PZD A;  2HTH B;  5C16 A;  2H7E A;  4K17 A;  4L1R A;  1KZG A;  1SGH A;  3U7D A;  1LB1 A;  2K2U A; 
#chains in the Genus database with same CATH homology
 4QJ3 B;  3GYO A;  5I2S A;  2GUM A;  2K8E A;  2KIG A;  2KR0 A;  2KIE A;  2Z13 A;  3TO1 A;  2KUQ A;  2GCJ A;  4IOY X;  2Z59 A;  4QXA B;  4CSQ A;  4HSI A;  4Z2M B;  4GNK B;  3NWF A;  3HIE A;  4QJ4 B;  5M4Y B;  3A58 A;  3U12 A;  3FVC A;  2YT2 A;  2GCL A;  3TVV A;  3TW1 A;  2K49 A;  4OT1 A;  5LG4 B;  4KHB B;  3OHM B;  4PQ0 A;  4OSN A;  3NWD A;  4QJ5 B;  2Z14 A;  5IRS A;  5I2M A;  4Z2N A;  4DIX A;  2ZKM X;  4GOU A;  3FSS A;  2NBV A;  4IFS A;  4L1R A;  3NWA A;  2RRF A;  4KHA A;  2Z4D A;  1ZYI A;  4KHB A;  3GYP A;  4KHO A;  4D6W A;  2FJU B;  2R2Y A;  3NW8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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