5M4YB

Crystal structure of the sec3/sso2 complex at 2.20 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
175
structure length
173
Chain Sequence
SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Protein SSO2
publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
total genus 50
structure length 173
sequence length 175
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2016-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5m4yB00
3HIEA 5LG4B 5M4YB 3A58A
chains in the Genus database with same CATH superfamily
4ZRKA 1PMSA 4PNKA 2KIEA 4KAXB 4EMOA 4CHJA 5DHAB 2Y7BA 4HATB 4H8SA 2LOXA 2DN6A 4NY0A 2Z0QA 1X1GA 2P0FA 4HDOA 3ZDTA 2D4QA 3VOQA 4GXBA 1MI1A 3NWDA 1PLSA 4EKUA 2BCJA 3A98B 4BBKA 2YS3A 1XCGA 4HHVA 5HE0A 1FAOA 1AQCA 4Z2MB 2LULA 1UNRA 1WJ1A 2Q13A 3PG7A 4L1RA 2YT1A 2YF0A 3TW1A 5CLQB 4TKNA 1ISNA 1DDVA 1QQGA 4DXAB 5C79A 2DYQA 2H7EA 4L6EA 1TQZA 3FM8C 3P7ZA 3MDBC 4CSQA 5C6RA 4KHBA 1W1GA 5I2MA 3DXDA 4D6WA 2K2JA 2ROVA 2EMSA 2Z4DA 2D10A 4HB0B 5J3YA 5CLLB 4GZUA 1XODA 1V5UA 5D3XA 4A6HA 3U12A 3V5WA 4HAXB 4MY6A 5D3VA 4DBBA 3X23A 3ML4A 4Y94A 3CIKA 4F7GA 4Z2NA 4GMVA 5DI9B 2DX1A 2ZKMX 4C0AA 1PFJA 1SHCA 2I1JA 3U7DA 3IVFA 1U5EA 5KCVA 2YT2A 3QIJA 4QJ5B 1Z87A 3SNHA 2LKOA 2DHIA 1GC7A 3DXEA 3T06A 2GCJA 2Z0OA 2XQNM 4GN1A 1FOEA 1K5GB 3KRWA 2Y8GA 4HB2B 4KHBB 1RJ2A 2FJUB 2NMBA 2MKRA 4DX8A 4GPTB 3PVUA 4WJ7A 1I2HA 2K8EA 5DHFB 2DKPA 2ADZA 1OY2A 1WGQA 2VRWB 1UPRA 2M14A 3F0WA 2KUQA 2N23A 3CXBB 2D9ZA 4K17A 1P6SA 1FB8A 4QXAB 4A6FA 4HAVB 4F7HA 2D11A 1WJMA 5KQ1A 1NU2A 1UPQA 1GC6A 1AWEA 1KI1B 4YL8A 1U5DA 3WA0A 3P6AA 3B77A 4P7IA 3OANA 2KUPA 2GUMA 5JHHA 3RCPA 5C5BA 3D8DA 1FHXA 1TXDA 1FHOA 1J19A 2YS1A 2EJ8A 4XWXA 1P3RA 4HAYB 4ZRJA 1U27A 5EFXA 4HAZB 1V5MA 2YS5A 2Z14A 3KZ1A 2IYBA 1IRSA 3F5RA 1OMWA 2W2WA 1DDWA 3ODOA 3KRXA 4A6KA 2L1CA 4GOUA 1MPHA 1M7RA 2DX5A 1X86A 2RRFA 2CAYA 2DA0A 4A6FB 3AU5A 3FEHA 2D2QA 4GMXB 2KR0A 3OHMB 1BWNA 4K2PA 5I2SA 3KSYA 2HTHB 5DIFB 3TO1A 2J0KA 2MFQA 4HSIA 5JHGA 1ZVRA 5D3YA 1Y5OA 2PZ1A 3ZVRA 2RSGA 2I1KA 1X1FA 4MT7A 5C5BB 1FHWA 2YVCA 2K49A 5JP4A 1NI2A 3SUZA 3FSSA 2EMTA 1FGYA 1EVHA 2D9YA 2LOZA 2H7DA 2MWNB 2GS0A 3ODXA 4GNKB 1V5PA 1MIZB 1U5FA 1GG3A 2MDXA 3SO6A 2YT0A 1MK7B 3NW8A 1BTKA 1EGXA 1DDMA 1MK9B 1W1HA 4HAWB 5M4YB 3DXCA 3HQCA 4F7UP 1H10A 1DYNA 2P0HA 3PSCA 2RLOA 2GCLA 2ZPYA 2UVMA 1WGUA 2RVBB 2VKIA 4KHOA 3ULBA 2IFSA 2Z0PA 1LW3A 3GYOA 2I5CA 3FVCA 3PVLA 1MIXA 3VIAA 4IOYX 3AU4A 3N7CA 2HE7A 3D8EA 2DKQA 1Y19B 1KZ7A 2DHJA 2DTCA 2K2UA 3QWMA 4IFSA 5FI1A 3NWAA 5HE3A 1X05A 3NSUA 2COAA 1WVHA 3TFMA 4KHAA 1ZC3B 1ZYIA 5JLJB 2RNRB 5C16A 4TYZA 1SGHA 3ODWA 2M38A 4QJ3B 2R09A 2J0JA 3WYFB 3AJ4A 2VSZA 2OQBA 1FGZA 2LG1A 3A8PA 1U5GA 3O96A 1OQNA 5J3TA 2G35A 1MAIA 3TVVA 3UZTA 2L2IA 2DFKA 2CY4A 1K5DB 1UNPA 4HB4B 1W1DA 3KY9A 2Z13A 4EJNA 1UNQA 3HIEA 5J3QA 3HSAA 1N3HA 2E2XA 4CHMA 2GJYA 4KVGB 1ZC4B 3HW2B 4B6HA 2EC1A 2ELAA 5LONB 1XX0A 3HK0A 1U29A 1T77A 2Z59A 5D27A 2R0DA 4K81A 5KQ4A 3SYXA 1I7AA 2D9WA 2K00A 2KCJA 4OT1A 2W2XC 5IRSA 2UZRA 3A8QA 3A58A 1WG7A 2QKLA 3BINA 5D3WA 1LB1A 5DH9B 4HAUB 5FI0A 3BJIA 1V89A 4D0NB 2KGXB 1ZSQA 2DLWA 5L81A 4HDQA 2COCA 2ROZB 2D9VA 2AL6A 1DBHA 1M7EA 2J59M 2LYDA 2NBVA 1EF1A 3PEGA 1J0WA 1NTVA 2D9XA 3G9WA 4K2OA 2AEHA 2P8VA 4DX90 5LG4B 1B55A 2KIGA 2J0MA 3U8ZA 4QJ4B 2YRYA 2ELBA 1UEFA 4YONA 2Y8FA 5LOPB 3TCAA 2X18A 1V88A 2R2YA 2DYNA 4PQ0A 1DROA 4IAPA 3PVWA 2QKMA 3SV1A 2RUKB 5GOWB 4HB3B 2V76A 4WVFB 1E5WA 2YSZA 3ULCA 1ZM0A 2NZ8B 4NSWA 3M1IB 2UZSA 4A5KA 1H4RA 2CRFA 3D8FA 3LJUX 3MPXA 3PZDA 2I5FA 1TJ6A 4ZRIA 2OTXA 3PP2A 1XKEA 1P5TA 4WSFA 1NTYA 1V61A 3GYPA 2CY5A 1QC6A 4OSNA 1U2BA 2P0DA 4DIXA 2FJLA 3NWFA 1Q67A 1WI1A 3QBVB 5HE1A 1KZGA 2W2XD 1EAZA 1MKEA 1XR0B 2RGNB 2JP2A 1RRPB 1XD4A 2DHKA 1X11A 3DCXA 1BTNA 4CYEA 4MK0A 1BAKA 2CODA 5HE2A 2N0YA 2COFA
chains in the Genus database with same CATH topology
2GCJA 2K49A 2GCLA 4KHAA 2NBVA 3A58A 3NWDA 4OSNA 2Z13A 1ZYIA 2KIEA 4CSQA 3FSSA 2KR0A 4KHBA 3U12A 4KHOA 3OHMB 3HIEA 4DIXA 4KHBB 4Z2MB 2FJUB 5LG4B 3NWFA 5I2SA 3GYOA 2KIGA 5I2MA 3FVCA 4QJ3B 4D6WA 4Z2NA 4GNKB 4IOYX 4L1RA 2K8EA 3TO1A 4QJ4B 2ZKMX 3NW8A 4HSIA 3TW1A 2Z14A 2Z4DA 2Z59A 2KUQA 2YT2A 2GUMA 4QJ5B 4GOUA 4IFSA 2R2YA 5M4YB 3NWAA 4PQ0A 3TVVA 2RRFA 4OT1A 4QXAB 3GYPA 5IRSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HIE A;  5LG4 B;  5M4Y B;  3A58 A; 
#chains in the Genus database with same CATH topology
 4ZRK A;  1PMS A;  4PNK A;  2KIE A;  4KAX B;  4EMO A;  4CHJ A;  5DHA B;  2Y7B A;  4HAT B;  4H8S A;  2LOX A;  2DN6 A;  4NY0 A;  2Z0Q A;  1X1G A;  2P0F A;  4HDO A;  3ZDT A;  2D4Q A;  3VOQ A;  4GXB A;  1MI1 A;  3NWD A;  1PLS A;  4EKU A;  2BCJ A;  3A98 B;  4BBK A;  2YS3 A;  1XCG A;  4HHV A;  5HE0 A;  1FAO A;  1AQC A;  4Z2M B;  2LUL A;  1UNR A;  1WJ1 A;  2Q13 A;  3PG7 A;  4L1R A;  2YT1 A;  2YF0 A;  3TW1 A;  5CLQ B;  4TKN A;  1ISN A;  1DDV A;  1QQG A;  4DXA B;  5C79 A;  2DYQ A;  2H7E A;  4L6E A;  1TQZ A;  3FM8 C;  3P7Z A;  3MDB C;  4CSQ A;  5C6R A;  4KHB A;  1W1G A;  5I2M A;  3DXD A;  4D6W A;  2K2J A;  2ROV A;  2EMS A;  2Z4D A;  2D10 A;  4HB0 B;  5J3Y A;  5CLL B;  4GZU A;  1XOD A;  1V5U A;  5D3X A;  4A6H A;  3U12 A;  3V5W A;  4HAX B;  4MY6 A;  5D3V A;  4DBB A;  3X23 A;  3ML4 A;  4Y94 A;  3CIK A;  4F7G A;  4Z2N A;  4GMV A;  5DI9 B;  2DX1 A;  2ZKM X;  4C0A A;  1PFJ A;  1SHC A;  2I1J A;  3U7D A;  3IVF A;  1U5E A;  5KCV A;  2YT2 A;  3QIJ A;  4QJ5 B;  1Z87 A;  3SNH A;  2LKO A;  2DHI A;  1GC7 A;  3DXE A;  3T06 A;  2GCJ A;  2Z0O A;  2XQN M;  4GN1 A;  1FOE A;  1K5G B;  3KRW A;  2Y8G A;  4HB2 B;  4KHB B;  1RJ2 A;  2FJU B;  2NMB A;  2MKR A;  4DX8 A;  4GPT B;  3PVU A;  4WJ7 A;  1I2H A;  2K8E A;  5DHF B;  2DKP A;  2ADZ A;  1OY2 A;  1WGQ A;  2VRW B;  1UPR A;  2M14 A;  3F0W A;  2KUQ A;  2N23 A;  3CXB B;  2D9Z A;  4K17 A;  1P6S A;  1FB8 A;  4QXA B;  4A6F A;  4HAV B;  4F7H A;  2D11 A;  1WJM A;  5KQ1 A;  1NU2 A;  1UPQ A;  1GC6 A;  1AWE A;  1KI1 B;  4YL8 A;  1U5D A;  3WA0 A;  3P6A A;  3B77 A;  4P7I A;  3OAN A;  2KUP A;  2GUM A;  5JHH A;  3RCP A;  5C5B A;  3D8D A;  1FHX A;  1TXD A;  1FHO A;  1J19 A;  2YS1 A;  2EJ8 A;  4XWX A;  1P3R A;  4HAY B;  4ZRJ A;  1U27 A;  5EFX A;  4HAZ B;  1V5M A;  2YS5 A;  2Z14 A;  3KZ1 A;  2IYB A;  1IRS A;  3F5R A;  1OMW A;  2W2W A;  1DDW A;  3ODO A;  3KRX A;  4A6K A;  2L1C A;  4GOU A;  1MPH A;  1M7R A;  2DX5 A;  1X86 A;  2RRF A;  2CAY A;  2DA0 A;  4A6F B;  3AU5 A;  3FEH A;  2D2Q A;  4GMX B;  2KR0 A;  3OHM B;  1BWN A;  4K2P A;  5I2S A;  3KSY A;  2HTH B;  5DIF B;  3TO1 A;  2J0K A;  2MFQ A;  4HSI A;  5JHG A;  1ZVR A;  5D3Y A;  1Y5O A;  2PZ1 A;  3ZVR A;  2RSG A;  2I1K A;  1X1F A;  4MT7 A;  5C5B B;  1FHW A;  2YVC A;  2K49 A;  5JP4 A;  1NI2 A;  3SUZ A;  3FSS A;  2EMT A;  1FGY A;  1EVH A;  2D9Y A;  2LOZ A;  2H7D A;  2MWN B;  2GS0 A;  3ODX A;  4GNK B;  1V5P A;  1MIZ B;  1U5F A;  1GG3 A;  2MDX A;  3SO6 A;  2YT0 A;  1MK7 B;  3NW8 A;  1BTK A;  1EGX A;  1DDM A;  1MK9 B;  1W1H A;  4HAW B;  5M4Y B;  3DXC A;  3HQC A;  4F7U P;  1H10 A;  1DYN A;  2P0H A;  3PSC A;  2RLO A;  2GCL A;  2ZPY A;  2UVM A;  1WGU A;  2RVB B;  2VKI A;  4KHO A;  3ULB A;  2IFS A;  2Z0P A;  1LW3 A;  3GYO A;  2I5C A;  3FVC A;  3PVL A;  1MIX A;  3VIA A;  4IOY X;  3AU4 A;  3N7C A;  2HE7 A;  3D8E A;  2DKQ A;  1Y19 B;  1KZ7 A;  2DHJ A;  2DTC A;  2K2U A;  3QWM A;  4IFS A;  5FI1 A;  3NWA A;  5HE3 A;  1X05 A;  3NSU A;  2COA A;  1WVH A;  3TFM A;  4KHA A;  1ZC3 B;  1ZYI A;  5JLJ B;  2RNR B;  5C16 A;  4TYZ A;  1SGH A;  3ODW A;  2M38 A;  4QJ3 B;  2R09 A;  2J0J A;  3WYF B;  3AJ4 A;  2VSZ A;  2OQB A;  1FGZ A;  2LG1 A;  3A8P A;  1U5G A;  3O96 A;  1OQN A;  5J3T A;  2G35 A;  1MAI A;  3TVV A;  3UZT A;  2L2I A;  2DFK A;  2CY4 A;  1K5D B;  1UNP A;  4HB4 B;  1W1D A;  3KY9 A;  2Z13 A;  4EJN A;  1UNQ A;  3HIE A;  5J3Q A;  3HSA A;  1N3H A;  2E2X A;  4CHM A;  2GJY A;  4KVG B;  1ZC4 B;  3HW2 B;  4B6H A;  2EC1 A;  2ELA A;  5LON B;  1XX0 A;  3HK0 A;  1U29 A;  1T77 A;  2Z59 A;  5D27 A;  2R0D A;  4K81 A;  5KQ4 A;  3SYX A;  1I7A A;  2D9W A;  2K00 A;  2KCJ A;  4OT1 A;  2W2X C;  5IRS A;  2UZR A;  3A8Q A;  3A58 A;  1WG7 A;  2QKL A;  3BIN A;  5D3W A;  1LB1 A;  5DH9 B;  4HAU B;  5FI0 A;  3BJI A;  1V89 A;  4D0N B;  2KGX B;  1ZSQ A;  2DLW A;  5L81 A;  4HDQ A;  2COC A;  2ROZ B;  2D9V A;  2AL6 A;  1DBH A;  1M7E A;  2J59 M;  2LYD A;  2NBV A;  1EF1 A;  3PEG A;  1J0W A;  1NTV A;  2D9X A;  3G9W A;  4K2O A;  2AEH A;  2P8V A;  4DX9 0;  5LG4 B;  1B55 A;  2KIG A;  2J0M A;  3U8Z A;  4QJ4 B;  2YRY A;  2ELB A;  1UEF A;  4YON A;  2Y8F A;  5LOP B;  3TCA A;  2X18 A;  1V88 A;  2R2Y A;  2DYN A;  4PQ0 A;  1DRO A;  4IAP A;  3PVW A;  2QKM A;  3SV1 A;  2RUK B;  5GOW B;  4HB3 B;  2V76 A;  4WVF B;  1E5W A;  2YSZ A;  3ULC A;  1ZM0 A;  2NZ8 B;  4NSW A;  3M1I B;  2UZS A;  4A5K A;  1H4R A;  2CRF A;  3D8F A;  3LJU X;  3MPX A;  3PZD A;  2I5F A;  1TJ6 A;  4ZRI A;  2OTX A;  3PP2 A;  1XKE A;  1P5T A;  4WSF A;  1NTY A;  1V61 A;  3GYP A;  2CY5 A;  1QC6 A;  4OSN A;  1U2B A;  2P0D A;  4DIX A;  2FJL A;  3NWF A;  1Q67 A;  1WI1 A;  3QBV B;  5HE1 A;  1KZG A;  2W2X D;  1EAZ A;  1MKE A;  1XR0 B;  2RGN B;  2JP2 A;  1RRP B;  1XD4 A;  2DHK A;  1X11 A;  3DCX A;  1BTN A;  4CYE A;  4MK0 A;  1BAK A;  2COD A;  5HE2 A;  2N0Y A;  2COF A; 
#chains in the Genus database with same CATH homology
 2GCJ A;  2K49 A;  2GCL A;  4KHA A;  2NBV A;  3A58 A;  3NWD A;  4OSN A;  2Z13 A;  1ZYI A;  2KIE A;  4CSQ A;  3FSS A;  2KR0 A;  4KHB A;  3U12 A;  4KHO A;  3OHM B;  3HIE A;  4DIX A;  4KHB B;  4Z2M B;  2FJU B;  5LG4 B;  3NWF A;  5I2S A;  3GYO A;  2KIG A;  5I2M A;  3FVC A;  4QJ3 B;  4D6W A;  4Z2N A;  4GNK B;  4IOY X;  4L1R A;  2K8E A;  3TO1 A;  4QJ4 B;  2ZKM X;  3NW8 A;  4HSI A;  3TW1 A;  2Z14 A;  2Z4D A;  2Z59 A;  2KUQ A;  2YT2 A;  2GUM A;  4QJ5 B;  4GOU A;  4IFS A;  2R2Y A;  5M4Y B;  3NWA A;  4PQ0 A;  3TVV A;  2RRF A;  4OT1 A;  4QXA B;  3GYP A;  5IRS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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