5M4YB

Crystal structure of the sec3/sso2 complex at 2.20 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
175
structure length
173
Chain Sequence
SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein SSO2
publication title Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Structural protein
total genus 50
structure length 173
sequence length 175
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2016-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 5m4yB00
5LG4B 5M4YB 3A58A 3HIEA
chains in the Genus database with same CATH superfamily
2M38A 1MK7B 4A6FB 2UVMA 4CHJA 2W2XC 3TO1A 2KIGA 2G35A 2I1JA 3QIJA 4KHBA 3GYPA 3O96A 1RRPB 3SO6A 2Z59A 2YT1A 3WA0A 2D9XA 1H10A 3DXEA 2H7EA 4HAVB 1MI1A 1DBHA 2EJ8A 4HAXB 3RCPA 3F5RA 4KHOA 2CRFA 1BTNA 1MIXA 2YS3A 2DFKA 5J3YA 2RUKB 2I5CA 3SV1A 2Z4DA 2DA0A 1T77A 4A6FA 1I7AA 1E5WA 3VIAA 5CLLB 1QQGA 3HIEA 1V88A 4OT1A 1NI2A 3FSSA 1PLSA 3SYXA 2ROVA 4MK0A 5D3YA 4HAUB 3M1IB 5HE2A 4HDQA 2YS1A 2K00A 4ZRIA 2RNRB 3D8EA 1WJ1A 2DKQA 1P6SA 1U5DA 5FI1A 1WGUA 1UPQA 5C5BA 5HE3A 2YRYA 3PVUA 4HATB 4Z2MB 3PP2A 2NMBA 3A98B 2AL6A 1GC7A 3N7CA 5I2MA 1LB1A 1EAZA 3U8ZA 3PVLA 4BBKA 1UNPA 1EF1A 4QJ4B 4GOUA 1DDWA 3FVCA 4NY0A 2YT2A 2CODA 1EGXA 4PQ0A 1KI1B 2GUMA 3NW8A 3PG7A 5DI9B 4EKUA 4DX90 3MPXA 1GC6A 4Y94A 5DH9B 2LYDA 1X86A 2PZ1A 1W1HA 1X05A 4TKNA 5JP4A 5IRSA 5L81A 2GS0A 2AEHA 1V5UA 1M7EA 2VSZA 4KHBB 3V5WA 2DX5A 2YT0A 2VRWB 3BJIA 1MK9B 4GNKB 5M4YB 2OQBA 2K49A 2P0HA 3ZDTA 1NU2A 3A58A 3ODOA 2K2UA 3T06A 1KZ7A 4HDOA 1RJ2A 4K81A 2LOXA 1K5GB 2CY5A 2DHIA 4CSQA 3TFMA 1GG3A 2DX1A 4KAXB 1Q67A 2HE7A 1XR0B 3GYOA 2UZRA 5JHGA 4Z2NA 4IAPA 2JP2A 2Y7BA 2ZPYA 1OQNA 1P3RA 4QXAB 4GZUA 2EC1A 2Z13A 5C6RA 2J0MA 4H8SA 4OSNA 4A6KA 3LJUX 1V5PA 4HAYB 2FJLA 5C79A 1W1GA 4HHVA 2YSZA 2RSGA 3P7ZA 3ML4A 1LW3A 1ZC4B 2ELBA 2YF0A 2EMTA 2RRFA 1V89A 5D3WA 1V61A 2CAYA 1P5TA 1TXDA 1W1DA 1BWNA 4GN1A 2KIEA 5C5BB 4YONA 1OMWA 2OTXA 3PZDA 4HAWB 4A6HA 2ELAA 4D6WA 3F0WA 2L1CA 1V5MA 5EFXA 2COAA 2LKOA 4HSIA 2H7DA 1J19A 1ZVRA 2I1KA 2M14A 2K8EA 1MPHA 2DN6A 3CIKA 4HB3B 3TW1A 3HW2B 1Z87A 2LOZA 2EMSA 3AU4A 3SUZA 2X18A 1ISNA 3D8FA 2P0FA 4GMVA 1ZSQA 1FOEA 4TYZA 1FB8A 4HB0B 1BAKA 1MKEA 1UEFA 2GCJA 2KUPA 1DDVA 4HAZB 4GPTB 1J0WA 4IOYX 3KY9A 1FAOA 2COCA 4NSWA 2MFQA 1FHWA 1U27A 4KVGB 2N23A 3TCAA 2LULA 3TVVA 2IYBA 3HQCA 1IRSA 2MWNB 4XWXA 2VKIA 3DXDA 5HE1A 5GOWB 2P8VA 2L2IA 4PNKA 3A8QA 3AJ4A 1OY2A 1X1FA 1Y19B 3NWFA 1DYNA 3DXCA 4DBBA 1M7RA 1NTVA 1X1GA 5CLQB 5J3QA 2W2WA 1MAIA 1I2HA 2ROZB 4WJ7A 2MDXA 4CHMA 5LONB 2ADZA 5LOPB 4ZRJA 1SGHA 1H4RA 3PEGA 5DHAB 2KR0A 3NWDA 4ZRKA 5JLJB 5KQ1A 4K17A 2MKRA 2J59M 4EJNA 2UZSA 4QJ3B 1ZM0A 1U2BA 3QWMA 2Y8GA 2COFA 2YS5A 4F7HA 3OANA 1TJ6A 1PFJA 4D0NB 1UNQA 1WGQA 4MY6A 4GXBA 1WJMA 1X11A 2DHJA 4HB2B 1FHOA 2V76A 3DCXA 1AWEA 4KHAA 1XX0A 4L1RA 4DX8A 2KGXB 1NTYA 2K2JA 1U5EA 4HB4B 4P7IA 4DIXA 4MT7A 2D11A 4YL8A 5J3TA 4IFSA 1ZC3B 3AU5A 3CXBB 2R09A 3QBVB 2J0JA 2BCJA 1N3HA 2R2YA 4QJ5B 2IFSA 2KUQA 1B55A 4DXAB 1UNRA 3ZVRA 3ODWA 5DIFB 4A5KA 2J0KA 1QC6A 1ZYIA 3FEHA 2D9ZA 3HSAA 2D9VA 3KRWA 4EMOA 1U5GA 5D3VA 1AQCA 5D27A 4K2OA 3OHMB 3B77A 1FGZA 2D9YA 5KCVA 3MDBC 1FHXA 3NSUA 4L6EA 1XKEA 5HE0A 3KRXA 2CY4A 3PSCA 5DHFB 5D3XA 1K5DB 3KSYA 3U7DA 3U12A 1XD4A 2I5FA 2W2XD 2NZ8B 2Z14A 3ULCA 3FM8C 2RVBB 3SNHA 1DDMA 2GCLA 1PMSA 2NBVA 3KZ1A 2Z0PA 2N0YA 1WG7A 4F7UP 4GMXB 2R0DA 2ZKMX 2GJYA 1FGYA 3UZTA 1KZGA 1MIZB 2DHKA 4B6HA 1XCGA 5FI0A 5I2SA 2P0DA 3VOQA 2Z0QA 3G9WA 5C16A 1DROA 2E2XA 2Y8FA 1WI1A 1WVHA 2QKLA 2D10A 4K2PA 3IVFA 1SHCA 2DYNA 4CYEA 2D9WA 3P6AA 3ULBA 2Z0OA 4WSFA 2QKMA 2RLOA 4F7GA 3HK0A 3A8PA 2DTCA 1EVHA 1TQZA 2KCJA 4WVFB 2DYQA 2DKPA 2RGNB 1BTKA 2D4QA 2D2QA 1U5FA 2Q13A 3D8DA 3WYFB 2LG1A 2HTHB 5KQ4A 1UPRA 3BINA 3X23A 3ODXA 1XODA 2DLWA 2FJUB 2YVCA 1Y5OA 3NWAA 4C0AA 5LG4B 1U29A 3PVWA 2XQNM 5JHHA
chains in the Genus database with same CATH topology
5I2MA 4DIXA 4KHOA 4KHBB 4IFSA 3GYOA 2RRFA 2GCLA 2K8EA 3TO1A 2KIGA 4Z2NA 4QJ4B 3OHMB 2NBVA 3FVCA 4GOUA 2YT2A 3TW1A 5M4YB 2Z4DA 4GNKB 2KIEA 4KHBA 2R2YA 2K49A 3GYPA 4QXAB 3TVVA 2Z13A 4QJ5B 4PQ0A 2GUMA 3NW8A 3A58A 2KUQA 4OSNA 2ZKMX 2KR0A 2Z59A 3NWDA 4D6WA 4KHAA 2FJUB 3HIEA 4OT1A 4L1RA 1ZYIA 3NWAA 2GCJA 3FSSA 4CSQA 3U12A 5IRSA 4QJ3B 4Z2MB 5I2SA 4IOYX 5LG4B 2Z14A 4HSIA 3NWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LG4 B;  5M4Y B;  3A58 A;  3HIE A; 
#chains in the Genus database with same CATH topology
 2M38 A;  1MK7 B;  4A6F B;  2UVM A;  4CHJ A;  2W2X C;  3TO1 A;  2KIG A;  2G35 A;  2I1J A;  3QIJ A;  4KHB A;  3GYP A;  3O96 A;  1RRP B;  3SO6 A;  2Z59 A;  2YT1 A;  3WA0 A;  2D9X A;  1H10 A;  3DXE A;  2H7E A;  4HAV B;  1MI1 A;  1DBH A;  2EJ8 A;  4HAX B;  3RCP A;  3F5R A;  4KHO A;  2CRF A;  1BTN A;  1MIX A;  2YS3 A;  2DFK A;  5J3Y A;  2RUK B;  2I5C A;  3SV1 A;  2Z4D A;  2DA0 A;  1T77 A;  4A6F A;  1I7A A;  1E5W A;  3VIA A;  5CLL B;  1QQG A;  3HIE A;  1V88 A;  4OT1 A;  1NI2 A;  3FSS A;  1PLS A;  3SYX A;  2ROV A;  4MK0 A;  5D3Y A;  4HAU B;  3M1I B;  5HE2 A;  4HDQ A;  2YS1 A;  2K00 A;  4ZRI A;  2RNR B;  3D8E A;  1WJ1 A;  2DKQ A;  1P6S A;  1U5D A;  5FI1 A;  1WGU A;  1UPQ A;  5C5B A;  5HE3 A;  2YRY A;  3PVU A;  4HAT B;  4Z2M B;  3PP2 A;  2NMB A;  3A98 B;  2AL6 A;  1GC7 A;  3N7C A;  5I2M A;  1LB1 A;  1EAZ A;  3U8Z A;  3PVL A;  4BBK A;  1UNP A;  1EF1 A;  4QJ4 B;  4GOU A;  1DDW A;  3FVC A;  4NY0 A;  2YT2 A;  2COD A;  1EGX A;  4PQ0 A;  1KI1 B;  2GUM A;  3NW8 A;  3PG7 A;  5DI9 B;  4EKU A;  4DX9 0;  3MPX A;  1GC6 A;  4Y94 A;  5DH9 B;  2LYD A;  1X86 A;  2PZ1 A;  1W1H A;  1X05 A;  4TKN A;  5JP4 A;  5IRS A;  5L81 A;  2GS0 A;  2AEH A;  1V5U A;  1M7E A;  2VSZ A;  4KHB B;  3V5W A;  2DX5 A;  2YT0 A;  2VRW B;  3BJI A;  1MK9 B;  4GNK B;  5M4Y B;  2OQB A;  2K49 A;  2P0H A;  3ZDT A;  1NU2 A;  3A58 A;  3ODO A;  2K2U A;  3T06 A;  1KZ7 A;  4HDO A;  1RJ2 A;  4K81 A;  2LOX A;  1K5G B;  2CY5 A;  2DHI A;  4CSQ A;  3TFM A;  1GG3 A;  2DX1 A;  4KAX B;  1Q67 A;  2HE7 A;  1XR0 B;  3GYO A;  2UZR A;  5JHG A;  4Z2N A;  4IAP A;  2JP2 A;  2Y7B A;  2ZPY A;  1OQN A;  1P3R A;  4QXA B;  4GZU A;  2EC1 A;  2Z13 A;  5C6R A;  2J0M A;  4H8S A;  4OSN A;  4A6K A;  3LJU X;  1V5P A;  4HAY B;  2FJL A;  5C79 A;  1W1G A;  4HHV A;  2YSZ A;  2RSG A;  3P7Z A;  3ML4 A;  1LW3 A;  1ZC4 B;  2ELB A;  2YF0 A;  2EMT A;  2RRF A;  1V89 A;  5D3W A;  1V61 A;  2CAY A;  1P5T A;  1TXD A;  1W1D A;  1BWN A;  4GN1 A;  2KIE A;  5C5B B;  4YON A;  1OMW A;  2OTX A;  3PZD A;  4HAW B;  4A6H A;  2ELA A;  4D6W A;  3F0W A;  2L1C A;  1V5M A;  5EFX A;  2COA A;  2LKO A;  4HSI A;  2H7D A;  1J19 A;  1ZVR A;  2I1K A;  2M14 A;  2K8E A;  1MPH A;  2DN6 A;  3CIK A;  4HB3 B;  3TW1 A;  3HW2 B;  1Z87 A;  2LOZ A;  2EMS A;  3AU4 A;  3SUZ A;  2X18 A;  1ISN A;  3D8F A;  2P0F A;  4GMV A;  1ZSQ A;  1FOE A;  4TYZ A;  1FB8 A;  4HB0 B;  1BAK A;  1MKE A;  1UEF A;  2GCJ A;  2KUP A;  1DDV A;  4HAZ B;  4GPT B;  1J0W A;  4IOY X;  3KY9 A;  1FAO A;  2COC A;  4NSW A;  2MFQ A;  1FHW A;  1U27 A;  4KVG B;  2N23 A;  3TCA A;  2LUL A;  3TVV A;  2IYB A;  3HQC A;  1IRS A;  2MWN B;  4XWX A;  2VKI A;  3DXD A;  5HE1 A;  5GOW B;  2P8V A;  2L2I A;  4PNK A;  3A8Q A;  3AJ4 A;  1OY2 A;  1X1F A;  1Y19 B;  3NWF A;  1DYN A;  3DXC A;  4DBB A;  1M7R A;  1NTV A;  1X1G A;  5CLQ B;  5J3Q A;  2W2W A;  1MAI A;  1I2H A;  2ROZ B;  4WJ7 A;  2MDX A;  4CHM A;  5LON B;  2ADZ A;  5LOP B;  4ZRJ A;  1SGH A;  1H4R A;  3PEG A;  5DHA B;  2KR0 A;  3NWD A;  4ZRK A;  5JLJ B;  5KQ1 A;  4K17 A;  2MKR A;  2J59 M;  4EJN A;  2UZS A;  4QJ3 B;  1ZM0 A;  1U2B A;  3QWM A;  2Y8G A;  2COF A;  2YS5 A;  4F7H A;  3OAN A;  1TJ6 A;  1PFJ A;  4D0N B;  1UNQ A;  1WGQ A;  4MY6 A;  4GXB A;  1WJM A;  1X11 A;  2DHJ A;  4HB2 B;  1FHO A;  2V76 A;  3DCX A;  1AWE A;  4KHA A;  1XX0 A;  4L1R A;  4DX8 A;  2KGX B;  1NTY A;  2K2J A;  1U5E A;  4HB4 B;  4P7I A;  4DIX A;  4MT7 A;  2D11 A;  4YL8 A;  5J3T A;  4IFS A;  1ZC3 B;  3AU5 A;  3CXB B;  2R09 A;  3QBV B;  2J0J A;  2BCJ A;  1N3H A;  2R2Y A;  4QJ5 B;  2IFS A;  2KUQ A;  1B55 A;  4DXA B;  1UNR A;  3ZVR A;  3ODW A;  5DIF B;  4A5K A;  2J0K A;  1QC6 A;  1ZYI A;  3FEH A;  2D9Z A;  3HSA A;  2D9V A;  3KRW A;  4EMO A;  1U5G A;  5D3V A;  1AQC A;  5D27 A;  4K2O A;  3OHM B;  3B77 A;  1FGZ A;  2D9Y A;  5KCV A;  3MDB C;  1FHX A;  3NSU A;  4L6E A;  1XKE A;  5HE0 A;  3KRX A;  2CY4 A;  3PSC A;  5DHF B;  5D3X A;  1K5D B;  3KSY A;  3U7D A;  3U12 A;  1XD4 A;  2I5F A;  2W2X D;  2NZ8 B;  2Z14 A;  3ULC A;  3FM8 C;  2RVB B;  3SNH A;  1DDM A;  2GCL A;  1PMS A;  2NBV A;  3KZ1 A;  2Z0P A;  2N0Y A;  1WG7 A;  4F7U P;  4GMX B;  2R0D A;  2ZKM X;  2GJY A;  1FGY A;  3UZT A;  1KZG A;  1MIZ B;  2DHK A;  4B6H A;  1XCG A;  5FI0 A;  5I2S A;  2P0D A;  3VOQ A;  2Z0Q A;  3G9W A;  5C16 A;  1DRO A;  2E2X A;  2Y8F A;  1WI1 A;  1WVH A;  2QKL A;  2D10 A;  4K2P A;  3IVF A;  1SHC A;  2DYN A;  4CYE A;  2D9W A;  3P6A A;  3ULB A;  2Z0O A;  4WSF A;  2QKM A;  2RLO A;  4F7G A;  3HK0 A;  3A8P A;  2DTC A;  1EVH A;  1TQZ A;  2KCJ A;  4WVF B;  2DYQ A;  2DKP A;  2RGN B;  1BTK A;  2D4Q A;  2D2Q A;  1U5F A;  2Q13 A;  3D8D A;  3WYF B;  2LG1 A;  2HTH B;  5KQ4 A;  1UPR A;  3BIN A;  3X23 A;  3ODX A;  1XOD A;  2DLW A;  2FJU B;  2YVC A;  1Y5O A;  3NWA A;  4C0A A;  5LG4 B;  1U29 A;  3PVW A;  2XQN M;  5JHH A; 
#chains in the Genus database with same CATH homology
 5I2M A;  4DIX A;  4KHO A;  4KHB B;  4IFS A;  3GYO A;  2RRF A;  2GCL A;  2K8E A;  3TO1 A;  2KIG A;  4Z2N A;  4QJ4 B;  3OHM B;  2NBV A;  3FVC A;  4GOU A;  2YT2 A;  3TW1 A;  5M4Y B;  2Z4D A;  4GNK B;  2KIE A;  4KHB A;  2R2Y A;  2K49 A;  3GYP A;  4QXA B;  3TVV A;  2Z13 A;  4QJ5 B;  4PQ0 A;  2GUM A;  3NW8 A;  3A58 A;  2KUQ A;  4OSN A;  2ZKM X;  2KR0 A;  2Z59 A;  3NWD A;  4D6W A;  4KHA A;  2FJU B;  3HIE A;  4OT1 A;  4L1R A;  1ZYI A;  3NWA A;  2GCJ A;  3FSS A;  4CSQ A;  3U12 A;  5IRS A;  4QJ3 B;  4Z2M B;  5I2S A;  4IOY X;  5LG4 B;  2Z14 A;  4HSI A;  3NWF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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