3A58A

Crystal structure of sec3p - rho1p complex from saccharomyces cerevisiae
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
185
structure length
185
Chain Sequence
NFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Exocyst complex component SEC3
publication title Structural basis for the Rho- and phosphoinositide-dependent localization of the exocyst subunit Sec3
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Protein transport/exocytosis
total genus 50
structure length 185
sequence length 185
chains with identical sequence C, E
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 3a58A01
3HIEA 5LG4B 3A58A 5M4YB
chains in the Genus database with same CATH superfamily
5FI0A 1BTKA 1NTYA 2HTHB 4HAWB 1M7RA 5M4YB 4KHAA 5DHAB 2YVCA 1XCGA 5D3WA 1V5UA 4GN1A 4IOYX 3TVVA 4GMVA 1BWNA 3SO6A 3VIAA 4MY6A 4HAXB 2GCJA 3HK0A 2D9VA 5CLLB 2J59M 2D9YA 1V89A 5D27A 3U7DA 1X1FA 1UNQA 5JP4A 1XD4A 2L1CA 2OQBA 2IFSA 1GG3A 3ODWA 1ISNA 3ML4A 3DXCA 5C16A 2K00A 4A6HA 2H7EA 5FI1A 1WGQA 2GS0A 5DH9B 4Z2NA 4HB0B 3P6AA 2NBVA 2I5CA 3OANA 1FGZA 2ADZA 1MIXA 5JHHA 1TXDA 4B6HA 1UPQA 5J3TA 4QJ3B 1RRPB 4EJNA 4F7HA 5KCVA 3OHMB 1K5DB 1DROA 1AWEA 1SGHA 2M38A 4HDOA 4GOUA 1H10A 1UEFA 4HB2B 4A6FA 3N7CA 2I5FA 2D2QA 3HIEA 2ROZB 2J0KA 1J19A 1W1HA 3VOQA 3GYOA 3A8QA 1W1DA 4HB4B 2FJLA 1FB8A 3P7ZA 3CXBB 5J3QA 4L6EA 3TW1A 2AEHA 4A6KA 1T77A 1PMSA 3ODOA 2W2WA 5C5BA 1BTNA 4HAYB 3PG7A 2VRWB 2DYNA 4GNKB 3KRWA 5IRSA 4DXAB 3TO1A 4KHBA 1ZYIA 1MIZB 2KGXB 1P3RA 4C0AA 3MDBC 2R2YA 2DFKA 5JLJB 2N23A 1ZVRA 2P0DA 2K2JA 4CHMA 4OSNA 2P0FA 2DA0A 3PEGA 5LONB 2LOXA 1TQZA 3NSUA 2LYDA 2MDXA 1WI1A 2DKQA 3ULBA 2RSGA 2GUMA 4D0NB 3QWMA 5CLQB 2K8EA 2I1JA 2ELBA 5KQ1A 1FHWA 4CSQA 3FM8C 2IYBA 2R09A 2PZ1A 2YSZA 3DCXA 4EMOA 2K49A 4F7UP 5KQ4A 1Q67A 2VKIA 3A58A 1DYNA 3KRXA 1MPHA 1QC6A 2VSZA 4ZRIA 2Z0OA 1RJ2A 2MFQA 3CIKA 2W2XD 3D8DA 3KZ1A 2RUKB 4QXAB 3QBVB 1OMWA 3ULCA 1EVHA 2KIEA 4NY0A 1XKEA 3HSAA 1GC6A 2DX1A 4DBBA 3AJ4A 2Z0PA 1Y19B 1MKEA 3NW8A 2MWNB 3BJIA 4HAVB 2ROVA 2DKPA 2DLWA 2Z13A 4ZRJA 2GJYA 2Z4DA 3QIJA 4WJ7A 3IVFA 3AU5A 2BCJA 2R0DA 2CAYA 2Z0QA 3RCPA 2Y8GA 1EF1A 3SNHA 1J0WA 3SUZA 2GCLA 2N0YA 1X05A 2COFA 1P5TA 5C6RA 3PVLA 2LULA 4K2PA 4A6FB 1FHOA 1U5FA 2OTXA 1SHCA 1V5MA 1KI1B 3A98B 5D3XA 2YT2A 4OT1A 4HSIA 2EC1A 5LG4B 3G9WA 2D9XA 2QKLA 1FGYA 5DI9B 1V88A 5C79A 1UNPA 2EJ8A 4CHJA 5C5BB 2DHKA 2KUPA 1MK9B 3UZTA 3SV1A 1U5EA 2YS5A 1EGXA 2D10A 4KHBB 4GXBA 2YF0A 1FHXA 1U29A 1X86A 1LW3A 1PLSA 3PVUA 2RGNB 1WVHA 1MAIA 5D3VA 5D3YA 2NZ8B 3NWDA 1PFJA 1DDVA 2DN6A 5HE2A 4DX8A 1I2HA 1I7AA 1XR0B 4L1RA 2YT0A 2KCJA 2ZPYA 1NTVA 1UPRA 2EMTA 3AU4A 3V5WA 4HAZB 1WJMA 2CY5A 5HE1A 3PSCA 3F5RA 2KUQA 2Q13A 2RRFA 3LJUX 1Z87A 1MI1A 1KZ7A 2DHIA 3D8EA 3NWAA 2LOZA 2J0MA 3KY9A 4DIXA 3TFMA 3WA0A 1U27A 1NU2A 1NI2A 1E5WA 4ZRKA 4CYEA 3U12A 5DHFB 4TKNA 3ZDTA 4D6WA 1DDMA 2FJUB 3KSYA 5DIFB 1H4RA 4K81A 1LB1A 2NMBA 2KIGA 1WG7A 2DHJA 1XODA 2I1KA 2JP2A 3FVCA 5I2SA 3PZDA 5HE3A 4BBKA 4WSFA 1MK7B 1U5DA 2E2XA 2YT1A 4K2OA 3T06A 3U8ZA 1ZM0A 4HB3B 2UVMA 5L81A 2MKRA 4Z2MB 2AL6A 4H8SA 2P0HA 1OQNA 2UZSA 2QKMA 4KVGB 2KR0A 1X11A 4YONA 1IRSA 1U2BA 4IFSA 2P8VA 3BINA 3NWFA 1TJ6A 4GMXB 3M1IB 4HHVA 5HE0A 3X23A 3MPXA 4XWXA 4NSWA 2M14A 2X18A 3D8FA 4GPTB 2CRFA 1ZC3B 5J3YA 1M7EA 2RVBB 2COAA 2UZRA 3B77A 4QJ4B 1DDWA 4QJ5B 1BAKA 1U5GA 2EMSA 4A5KA 4K17A 4F7GA 2G35A 1W1GA 3DXDA 4HATB 3HQCA 3F0WA 1Y5OA 3FEHA 2ELAA 1K5GB 1QQGA 1XX0A 3PP2A 2Y7BA 2D11A 2RNRB 2XQNM 4TYZA 4DX90 5I2MA 3PVWA 2Y8FA 2HE7A 2L2IA 4PQ0A 2K2UA 4KHOA 2CY4A 4IAPA 2DTCA 4KAXB 1X1GA 1WGUA 2RLOA 4WVFB 1V5PA 3ODXA 2W2XC 2YS3A 1ZSQA 5LOPB 1AQCA 4Y94A 1KZGA 1N3HA 2D9ZA 1V61A 4MK0A 2D9WA 2LG1A 3WYFB 3O96A 5JHGA 4YL8A 4MT7A 1DBHA 1OY2A 4GZUA 2LKOA 1ZC4B 2H7DA 2V76A 2ZKMX 2Z59A 1EAZA 2COCA 1GC7A 4HDQA 4HAUB 2YRYA 4P7IA 3TCAA 1FOEA 1B55A 2J0JA 3ZVRA 2DX5A 2DYQA 5GOWB 1UNRA 5EFXA 4EKUA 4PNKA 3DXEA 2Z14A 3A8PA 3HW2B 3FSSA 1P6SA 2YS1A 3GYPA 2CODA 3SYXA 2D4QA 1FAOA 1WJ1A
chains in the Genus database with same CATH topology
2Z59A 3OHMB 4KHOA 2KR0A 2K49A 4IFSA 4DIXA 3A58A 2Z13A 3FVCA 5I2SA 4KHBB 5M4YB 3NWFA 4KHAA 4GNKB 4GOUA 2Z4DA 4PQ0A 5IRSA 3TO1A 4KHBA 1ZYIA 4QXAB 4IOYX 3TVVA 2GUMA 2KIEA 4Z2NA 3HIEA 2KUQA 2NBVA 2R2YA 2GCJA 2RRFA 3NWDA 2K8EA 2YT2A 4OT1A 4Z2MB 4HSIA 3U12A 3GYOA 2Z14A 5LG4B 4D6WA 2FJUB 4QJ4B 4CSQA 2GCLA 5I2MA 3NW8A 3FSSA 4QJ5B 3GYPA 4OSNA 3NWAA 4QJ3B 2ZKMX 3TW1A 4L1RA 2KIGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HIE A;  5LG4 B;  3A58 A;  5M4Y B; 
#chains in the Genus database with same CATH topology
 5FI0 A;  1BTK A;  1NTY A;  2HTH B;  4HAW B;  1M7R A;  5M4Y B;  4KHA A;  5DHA B;  2YVC A;  1XCG A;  5D3W A;  1V5U A;  4GN1 A;  4IOY X;  3TVV A;  4GMV A;  1BWN A;  3SO6 A;  3VIA A;  4MY6 A;  4HAX B;  2GCJ A;  3HK0 A;  2D9V A;  5CLL B;  2J59 M;  2D9Y A;  1V89 A;  5D27 A;  3U7D A;  1X1F A;  1UNQ A;  5JP4 A;  1XD4 A;  2L1C A;  2OQB A;  2IFS A;  1GG3 A;  3ODW A;  1ISN A;  3ML4 A;  3DXC A;  5C16 A;  2K00 A;  4A6H A;  2H7E A;  5FI1 A;  1WGQ A;  2GS0 A;  5DH9 B;  4Z2N A;  4HB0 B;  3P6A A;  2NBV A;  2I5C A;  3OAN A;  1FGZ A;  2ADZ A;  1MIX A;  5JHH A;  1TXD A;  4B6H A;  1UPQ A;  5J3T A;  4QJ3 B;  1RRP B;  4EJN A;  4F7H A;  5KCV A;  3OHM B;  1K5D B;  1DRO A;  1AWE A;  1SGH A;  2M38 A;  4HDO A;  4GOU A;  1H10 A;  1UEF A;  4HB2 B;  4A6F A;  3N7C A;  2I5F A;  2D2Q A;  3HIE A;  2ROZ B;  2J0K A;  1J19 A;  1W1H A;  3VOQ A;  3GYO A;  3A8Q A;  1W1D A;  4HB4 B;  2FJL A;  1FB8 A;  3P7Z A;  3CXB B;  5J3Q A;  4L6E A;  3TW1 A;  2AEH A;  4A6K A;  1T77 A;  1PMS A;  3ODO A;  2W2W A;  5C5B A;  1BTN A;  4HAY B;  3PG7 A;  2VRW B;  2DYN A;  4GNK B;  3KRW A;  5IRS A;  4DXA B;  3TO1 A;  4KHB A;  1ZYI A;  1MIZ B;  2KGX B;  1P3R A;  4C0A A;  3MDB C;  2R2Y A;  2DFK A;  5JLJ B;  2N23 A;  1ZVR A;  2P0D A;  2K2J A;  4CHM A;  4OSN A;  2P0F A;  2DA0 A;  3PEG A;  5LON B;  2LOX A;  1TQZ A;  3NSU A;  2LYD A;  2MDX A;  1WI1 A;  2DKQ A;  3ULB A;  2RSG A;  2GUM A;  4D0N B;  3QWM A;  5CLQ B;  2K8E A;  2I1J A;  2ELB A;  5KQ1 A;  1FHW A;  4CSQ A;  3FM8 C;  2IYB A;  2R09 A;  2PZ1 A;  2YSZ A;  3DCX A;  4EMO A;  2K49 A;  4F7U P;  5KQ4 A;  1Q67 A;  2VKI A;  3A58 A;  1DYN A;  3KRX A;  1MPH A;  1QC6 A;  2VSZ A;  4ZRI A;  2Z0O A;  1RJ2 A;  2MFQ A;  3CIK A;  2W2X D;  3D8D A;  3KZ1 A;  2RUK B;  4QXA B;  3QBV B;  1OMW A;  3ULC A;  1EVH A;  2KIE A;  4NY0 A;  1XKE A;  3HSA A;  1GC6 A;  2DX1 A;  4DBB A;  3AJ4 A;  2Z0P A;  1Y19 B;  1MKE A;  3NW8 A;  2MWN B;  3BJI A;  4HAV B;  2ROV A;  2DKP A;  2DLW A;  2Z13 A;  4ZRJ A;  2GJY A;  2Z4D A;  3QIJ A;  4WJ7 A;  3IVF A;  3AU5 A;  2BCJ A;  2R0D A;  2CAY A;  2Z0Q A;  3RCP A;  2Y8G A;  1EF1 A;  3SNH A;  1J0W A;  3SUZ A;  2GCL A;  2N0Y A;  1X05 A;  2COF A;  1P5T A;  5C6R A;  3PVL A;  2LUL A;  4K2P A;  4A6F B;  1FHO A;  1U5F A;  2OTX A;  1SHC A;  1V5M A;  1KI1 B;  3A98 B;  5D3X A;  2YT2 A;  4OT1 A;  4HSI A;  2EC1 A;  5LG4 B;  3G9W A;  2D9X A;  2QKL A;  1FGY A;  5DI9 B;  1V88 A;  5C79 A;  1UNP A;  2EJ8 A;  4CHJ A;  5C5B B;  2DHK A;  2KUP A;  1MK9 B;  3UZT A;  3SV1 A;  1U5E A;  2YS5 A;  1EGX A;  2D10 A;  4KHB B;  4GXB A;  2YF0 A;  1FHX A;  1U29 A;  1X86 A;  1LW3 A;  1PLS A;  3PVU A;  2RGN B;  1WVH A;  1MAI A;  5D3V A;  5D3Y A;  2NZ8 B;  3NWD A;  1PFJ A;  1DDV A;  2DN6 A;  5HE2 A;  4DX8 A;  1I2H A;  1I7A A;  1XR0 B;  4L1R A;  2YT0 A;  2KCJ A;  2ZPY A;  1NTV A;  1UPR A;  2EMT A;  3AU4 A;  3V5W A;  4HAZ B;  1WJM A;  2CY5 A;  5HE1 A;  3PSC A;  3F5R A;  2KUQ A;  2Q13 A;  2RRF A;  3LJU X;  1Z87 A;  1MI1 A;  1KZ7 A;  2DHI A;  3D8E A;  3NWA A;  2LOZ A;  2J0M A;  3KY9 A;  4DIX A;  3TFM A;  3WA0 A;  1U27 A;  1NU2 A;  1NI2 A;  1E5W A;  4ZRK A;  4CYE A;  3U12 A;  5DHF B;  4TKN A;  3ZDT A;  4D6W A;  1DDM A;  2FJU B;  3KSY A;  5DIF B;  1H4R A;  4K81 A;  1LB1 A;  2NMB A;  2KIG A;  1WG7 A;  2DHJ A;  1XOD A;  2I1K A;  2JP2 A;  3FVC A;  5I2S A;  3PZD A;  5HE3 A;  4BBK A;  4WSF A;  1MK7 B;  1U5D A;  2E2X A;  2YT1 A;  4K2O A;  3T06 A;  3U8Z A;  1ZM0 A;  4HB3 B;  2UVM A;  5L81 A;  2MKR A;  4Z2M B;  2AL6 A;  4H8S A;  2P0H A;  1OQN A;  2UZS A;  2QKM A;  4KVG B;  2KR0 A;  1X11 A;  4YON A;  1IRS A;  1U2B A;  4IFS A;  2P8V A;  3BIN A;  3NWF A;  1TJ6 A;  4GMX B;  3M1I B;  4HHV A;  5HE0 A;  3X23 A;  3MPX A;  4XWX A;  4NSW A;  2M14 A;  2X18 A;  3D8F A;  4GPT B;  2CRF A;  1ZC3 B;  5J3Y A;  1M7E A;  2RVB B;  2COA A;  2UZR A;  3B77 A;  4QJ4 B;  1DDW A;  4QJ5 B;  1BAK A;  1U5G A;  2EMS A;  4A5K A;  4K17 A;  4F7G A;  2G35 A;  1W1G A;  3DXD A;  4HAT B;  3HQC A;  3F0W A;  1Y5O A;  3FEH A;  2ELA A;  1K5G B;  1QQG A;  1XX0 A;  3PP2 A;  2Y7B A;  2D11 A;  2RNR B;  2XQN M;  4TYZ A;  4DX9 0;  5I2M A;  3PVW A;  2Y8F A;  2HE7 A;  2L2I A;  4PQ0 A;  2K2U A;  4KHO A;  2CY4 A;  4IAP A;  2DTC A;  4KAX B;  1X1G A;  1WGU A;  2RLO A;  4WVF B;  1V5P A;  3ODX A;  2W2X C;  2YS3 A;  1ZSQ A;  5LOP B;  1AQC A;  4Y94 A;  1KZG A;  1N3H A;  2D9Z A;  1V61 A;  4MK0 A;  2D9W A;  2LG1 A;  3WYF B;  3O96 A;  5JHG A;  4YL8 A;  4MT7 A;  1DBH A;  1OY2 A;  4GZU A;  2LKO A;  1ZC4 B;  2H7D A;  2V76 A;  2ZKM X;  2Z59 A;  1EAZ A;  2COC A;  1GC7 A;  4HDQ A;  4HAU B;  2YRY A;  4P7I A;  3TCA A;  1FOE A;  1B55 A;  2J0J A;  3ZVR A;  2DX5 A;  2DYQ A;  5GOW B;  1UNR A;  5EFX A;  4EKU A;  4PNK A;  3DXE A;  2Z14 A;  3A8P A;  3HW2 B;  3FSS A;  1P6S A;  2YS1 A;  3GYP A;  2COD A;  3SYX A;  2D4Q A;  1FAO A;  1WJ1 A; 
#chains in the Genus database with same CATH homology
 2Z59 A;  3OHM B;  4KHO A;  2KR0 A;  2K49 A;  4IFS A;  4DIX A;  3A58 A;  2Z13 A;  3FVC A;  5I2S A;  4KHB B;  5M4Y B;  3NWF A;  4KHA A;  4GNK B;  4GOU A;  2Z4D A;  4PQ0 A;  5IRS A;  3TO1 A;  4KHB A;  1ZYI A;  4QXA B;  4IOY X;  3TVV A;  2GUM A;  2KIE A;  4Z2N A;  3HIE A;  2KUQ A;  2NBV A;  2R2Y A;  2GCJ A;  2RRF A;  3NWD A;  2K8E A;  2YT2 A;  4OT1 A;  4Z2M B;  4HSI A;  3U12 A;  3GYO A;  2Z14 A;  5LG4 B;  4D6W A;  2FJU B;  4QJ4 B;  4CSQ A;  2GCL A;  5I2M A;  3NW8 A;  3FSS A;  4QJ5 B;  3GYP A;  4OSN A;  3NWA A;  4QJ3 B;  2ZKM X;  3TW1 A;  4L1R A;  2KIG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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