3A58A

Crystal structure of sec3p - rho1p complex from saccharomyces cerevisiae
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
185
structure length
185
Chain Sequence
NFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Exocyst complex component SEC3
publication title Structural basis for the Rho- and phosphoinositide-dependent localization of the exocyst subunit Sec3
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Protein transport/exocytosis
total genus 50
structure length 185
sequence length 185
chains with identical sequence C, E
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 3a58A01
3A58A 3HIEA 5LG4B 5M4YB
chains in the Genus database with same CATH superfamily
3CXBB 2HTHB 4DX90 1UNPA 3NWDA 1DDWA 2VKIA 4EJNA 2YF0A 1DROA 2D9XA 2E2XA 4HB2B 4GN1A 4QXAB 3DCXA 1GG3A 1DBHA 4HATB 2Z13A 3FSSA 3N7CA 1WGQA 4HB4B 2DLWA 1W1GA 2EMTA 1V5PA 3LJUX 4F7GA 4GNKB 3MDBC 1XD4A 2D10A 5HE3A 2ROVA 3ULBA 5D3VA 1XR0B 2COCA 3AU5A 2ELBA 1QQGA 2DKPA 2YSZA 2K2JA 1BAKA 1QC6A 4MK0A 1MK7B 1MI1A 4WVFB 5CLLB 4HAYB 2GJYA 4GZUA 2L1CA 4L1RA 1LW3A 2GCLA 3AJ4A 5C6RA 2KUPA 3T06A 5DH9B 4MY6A 1U5GA 3TVVA 3B77A 2P8VA 1J0WA 2D2QA 1OY2A 4CYEA 5IRSA 4WSFA 2RRFA 1WJ1A 2MDXA 2YVCA 1FHXA 2Y8GA 3QWMA 2QKLA 2LG1A 1DYNA 4ZRIA 5JHGA 2J59M 3HK0A 4DIXA 3TW1A 2N23A 3KY9A 3ML4A 1Y19B 2ELAA 4HB3B 1MIZB 3UZTA 2COFA 4KAXB 2J0JA 1X11A 4EKUA 3ZDTA 1ZYIA 1FOEA 4CSQA 5FI0A 4Z2MB 2Y7BA 2D9WA 3KZ1A 2D9ZA 2Z0PA 4HAZB 2ROZB 3D8EA 3TCAA 2MWNB 2LOZA 3GYOA 1XODA 2OTXA 3NWAA 2IYBA 3F5RA 1KI1B 3BINA 2CODA 4QJ4B 2X18A 2KR0A 4PQ0A 2IFSA 4YL8A 4PNKA 2I1KA 2DYQA 2MKRA 4MT7A 2VSZA 1TJ6A 3NWFA 2M14A 2PZ1A 2D4QA 3U7DA 1M7EA 1P6SA 5EFXA 2LULA 1V61A 2K49A 3DXDA 4OT1A 5HE1A 1UNRA 5JHHA 2OQBA 1E5WA 1EF1A 3TFMA 1U2BA 2NZ8B 3HW2B 5CLQB 1H10A 2I5CA 1P3RA 1TQZA 1W1HA 1T77A 1MAIA 5I2SA 1GC7A 2YT0A 5M4YB 3HIEA 1RJ2A 3D8DA 2NMBA 2BCJA 2D11A 5I2MA 2YT1A 1X05A 4TYZA 1PLSA 3KRXA 2N0YA 2LKOA 3VIAA 2HE7A 4HAVB 2W2XD 1N3HA 2DN6A 2Z0QA 3M1IB 1PFJA 2JP2A 2Y8FA 2EC1A 3DXCA 4HDQA 4F7UP 2Z4DA 2AEHA 3SYXA 4DBBA 5J3TA 4HDOA 4Y94A 2MFQA 1B55A 5LONB 2DHKA 1GC6A 1U27A 3SUZA 2RNRB 5J3YA 3PVLA 4B6HA 1OQNA 2CAYA 2ADZA 3A8QA 5DIFB 4TKNA 3VOQA 3A58A 4K2PA 4OSNA 2Z59A 3FEHA 4ZRKA 3O96A 4C0AA 1K5DB 4D0NB 4IOYX 2I1JA 4HB0B 5DHFB 3P6AA 1I7AA 3SV1A 2DHIA 4IFSA 3WYFB 2P0HA 3NSUA 4K17A 1U29A 1BWNA 2K2UA 2GUMA 2CRFA 1FAOA 5LOPB 2Z0OA 1MKEA 2YRYA 4GXBA 1BTNA 4A6FA 2DX1A 3ODOA 3U12A 3PEGA 1MPHA 1LB1A 1U5EA 4P7IA 4KHOA 4KVGB 4GPTB 4A5KA 3PZDA 2GS0A 1AWEA 1RRPB 1M7RA 1WJMA 3RCPA 2J0KA 2LOXA 5HE2A 2DA0A 3PSCA 2D9VA 5KCVA 3OANA 1WGUA 4K2OA 2KGXB 2YS3A 4HSIA 4Z2NA 1ZSQA 3A98B 2RGNB 1BTKA 2UZSA 2W2WA 4GMXB 5C79A 5DHAB 1TXDA 3BJIA 2RUKB 1H4RA 5FI1A 1FHWA 2UZRA 3DXEA 4CHMA 3GYPA 2AL6A 2DX5A 3D8FA 5D27A 2CY4A 2DFKA 2H7EA 2YS5A 1V5UA 2RSGA 2KIEA 2EMSA 3AU4A 2FJUB 4BBKA 1J19A 2ZKMX 3HQCA 2DTCA 1ZC4B 5DI9B 4A6HA 2I5FA 1EGXA 1WVHA 3QIJA 1XKEA 2RLOA 4L6EA 2KIGA 2D9YA 4WJ7A 4NSWA 1DDVA 4KHBA 2KCJA 2COAA 2UVMA 1WG7A 2QKMA 1SGHA 4HAWB 3ODWA 3PP2A 3V5WA 1X86A 4HAXB 3SNHA 1AQCA 1FGYA 4QJ3B 3QBVB 3A8PA 1U5DA 2EJ8A 1ISNA 5LG4B 2G35A 2K8EA 2DKQA 1UPQA 1W1DA 1WI1A 3OHMB 1Z87A 4D6WA 5L81A 4QJ5B 5C5BA 1V5MA 3NW8A 3G9WA 4KHBB 2P0DA 1K5GB 5C16A 3ZVRA 1NU2A 5J3QA 1NTVA 2L2IA 5D3WA 3KSYA 2DHJA 1PMSA 2VRWB 4HAUB 2LYDA 1OMWA 1U5FA 1IRSA 5KQ4A 2NBVA 1I2HA 3PG7A 1X1FA 2ZPYA 2CY5A 2R0DA 2YT2A 1ZVRA 5C5BB 4H8SA 1SHCA 1X1GA 3PVUA 2Z14A 1FGZA 1NTYA 3FM8C 1UNQA 3PVWA 3U8ZA 5D3YA 3MPXA 2KUQA 1V89A 5KQ1A 3X23A 1EAZA 5D3XA 1MIXA 3ODXA 2DYNA 2M38A 5HE0A 4EMOA 4K81A 1NI2A 5JP4A 1KZ7A 2H7DA 3IVFA 4DXAB 2RVBB 4IAPA 4A6FB 2P0FA 1ZM0A 4DX8A 3ULCA 1ZC3B 1DDMA 1MK9B 1XX0A 4GOUA 1XCGA 2YS1A 3CIKA 4XWXA 1UPRA 4NY0A 4A6KA 4KHAA 1Y5OA 2XQNM 2R09A 5JLJB 1Q67A 4F7HA 1KZGA 2Q13A 2W2XC 1V88A 4HHVA 3HSAA 1UEFA 3F0WA 2K00A 3FVCA 5GOWB 4YONA 2R2YA 3KRWA 2V76A 2GCJA 4ZRJA 3P7ZA 3WA0A 2FJLA 2J0MA 3SO6A 4CHJA 4GMVA 1FHOA 1P5TA 1FB8A 1EVHA 3TO1A
chains in the Genus database with same CATH topology
1ZYIA 4QJ5B 2KIEA 4QJ4B 3NWDA 2Z4DA 5IRSA 2KR0A 4PQ0A 4CSQA 4HSIA 2RRFA 4Z2NA 3NW8A 4IOYX 3U12A 2YT2A 4KHBB 2FJUB 4Z2MB 4KHOA 2ZKMX 4QXAB 5I2SA 3FVCA 4QJ3B 2Z14A 4IFSA 4DIXA 2R2YA 2Z13A 5M4YB 3FSSA 3HIEA 3NWFA 2GCJA 3GYOA 5I2MA 3TW1A 4L1RA 2GCLA 3GYPA 2KIGA 3NWAA 4GOUA 2GUMA 4GNKB 2K49A 5LG4B 4OT1A 2K8EA 2KUQA 3TVVA 3TO1A 3OHMB 4KHAA 4OSNA 2NBVA 4KHBA 3A58A 4D6WA 2Z59A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A58 A;  3HIE A;  5LG4 B;  5M4Y B; 
#chains in the Genus database with same CATH topology
 3CXB B;  2HTH B;  4DX9 0;  1UNP A;  3NWD A;  1DDW A;  2VKI A;  4EJN A;  2YF0 A;  1DRO A;  2D9X A;  2E2X A;  4HB2 B;  4GN1 A;  4QXA B;  3DCX A;  1GG3 A;  1DBH A;  4HAT B;  2Z13 A;  3FSS A;  3N7C A;  1WGQ A;  4HB4 B;  2DLW A;  1W1G A;  2EMT A;  1V5P A;  3LJU X;  4F7G A;  4GNK B;  3MDB C;  1XD4 A;  2D10 A;  5HE3 A;  2ROV A;  3ULB A;  5D3V A;  1XR0 B;  2COC A;  3AU5 A;  2ELB A;  1QQG A;  2DKP A;  2YSZ A;  2K2J A;  1BAK A;  1QC6 A;  4MK0 A;  1MK7 B;  1MI1 A;  4WVF B;  5CLL B;  4HAY B;  2GJY A;  4GZU A;  2L1C A;  4L1R A;  1LW3 A;  2GCL A;  3AJ4 A;  5C6R A;  2KUP A;  3T06 A;  5DH9 B;  4MY6 A;  1U5G A;  3TVV A;  3B77 A;  2P8V A;  1J0W A;  2D2Q A;  1OY2 A;  4CYE A;  5IRS A;  4WSF A;  2RRF A;  1WJ1 A;  2MDX A;  2YVC A;  1FHX A;  2Y8G A;  3QWM A;  2QKL A;  2LG1 A;  1DYN A;  4ZRI A;  5JHG A;  2J59 M;  3HK0 A;  4DIX A;  3TW1 A;  2N23 A;  3KY9 A;  3ML4 A;  1Y19 B;  2ELA A;  4HB3 B;  1MIZ B;  3UZT A;  2COF A;  4KAX B;  2J0J A;  1X11 A;  4EKU A;  3ZDT A;  1ZYI A;  1FOE A;  4CSQ A;  5FI0 A;  4Z2M B;  2Y7B A;  2D9W A;  3KZ1 A;  2D9Z A;  2Z0P A;  4HAZ B;  2ROZ B;  3D8E A;  3TCA A;  2MWN B;  2LOZ A;  3GYO A;  1XOD A;  2OTX A;  3NWA A;  2IYB A;  3F5R A;  1KI1 B;  3BIN A;  2COD A;  4QJ4 B;  2X18 A;  2KR0 A;  4PQ0 A;  2IFS A;  4YL8 A;  4PNK A;  2I1K A;  2DYQ A;  2MKR A;  4MT7 A;  2VSZ A;  1TJ6 A;  3NWF A;  2M14 A;  2PZ1 A;  2D4Q A;  3U7D A;  1M7E A;  1P6S A;  5EFX A;  2LUL A;  1V61 A;  2K49 A;  3DXD A;  4OT1 A;  5HE1 A;  1UNR A;  5JHH A;  2OQB A;  1E5W A;  1EF1 A;  3TFM A;  1U2B A;  2NZ8 B;  3HW2 B;  5CLQ B;  1H10 A;  2I5C A;  1P3R A;  1TQZ A;  1W1H A;  1T77 A;  1MAI A;  5I2S A;  1GC7 A;  2YT0 A;  5M4Y B;  3HIE A;  1RJ2 A;  3D8D A;  2NMB A;  2BCJ A;  2D11 A;  5I2M A;  2YT1 A;  1X05 A;  4TYZ A;  1PLS A;  3KRX A;  2N0Y A;  2LKO A;  3VIA A;  2HE7 A;  4HAV B;  2W2X D;  1N3H A;  2DN6 A;  2Z0Q A;  3M1I B;  1PFJ A;  2JP2 A;  2Y8F A;  2EC1 A;  3DXC A;  4HDQ A;  4F7U P;  2Z4D A;  2AEH A;  3SYX A;  4DBB A;  5J3T A;  4HDO A;  4Y94 A;  2MFQ A;  1B55 A;  5LON B;  2DHK A;  1GC6 A;  1U27 A;  3SUZ A;  2RNR B;  5J3Y A;  3PVL A;  4B6H A;  1OQN A;  2CAY A;  2ADZ A;  3A8Q A;  5DIF B;  4TKN A;  3VOQ A;  3A58 A;  4K2P A;  4OSN A;  2Z59 A;  3FEH A;  4ZRK A;  3O96 A;  4C0A A;  1K5D B;  4D0N B;  4IOY X;  2I1J A;  4HB0 B;  5DHF B;  3P6A A;  1I7A A;  3SV1 A;  2DHI A;  4IFS A;  3WYF B;  2P0H A;  3NSU A;  4K17 A;  1U29 A;  1BWN A;  2K2U A;  2GUM A;  2CRF A;  1FAO A;  5LOP B;  2Z0O A;  1MKE A;  2YRY A;  4GXB A;  1BTN A;  4A6F A;  2DX1 A;  3ODO A;  3U12 A;  3PEG A;  1MPH A;  1LB1 A;  1U5E A;  4P7I A;  4KHO A;  4KVG B;  4GPT B;  4A5K A;  3PZD A;  2GS0 A;  1AWE A;  1RRP B;  1M7R A;  1WJM A;  3RCP A;  2J0K A;  2LOX A;  5HE2 A;  2DA0 A;  3PSC A;  2D9V A;  5KCV A;  3OAN A;  1WGU A;  4K2O A;  2KGX B;  2YS3 A;  4HSI A;  4Z2N A;  1ZSQ A;  3A98 B;  2RGN B;  1BTK A;  2UZS A;  2W2W A;  4GMX B;  5C79 A;  5DHA B;  1TXD A;  3BJI A;  2RUK B;  1H4R A;  5FI1 A;  1FHW A;  2UZR A;  3DXE A;  4CHM A;  3GYP A;  2AL6 A;  2DX5 A;  3D8F A;  5D27 A;  2CY4 A;  2DFK A;  2H7E A;  2YS5 A;  1V5U A;  2RSG A;  2KIE A;  2EMS A;  3AU4 A;  2FJU B;  4BBK A;  1J19 A;  2ZKM X;  3HQC A;  2DTC A;  1ZC4 B;  5DI9 B;  4A6H A;  2I5F A;  1EGX A;  1WVH A;  3QIJ A;  1XKE A;  2RLO A;  4L6E A;  2KIG A;  2D9Y A;  4WJ7 A;  4NSW A;  1DDV A;  4KHB A;  2KCJ A;  2COA A;  2UVM A;  1WG7 A;  2QKM A;  1SGH A;  4HAW B;  3ODW A;  3PP2 A;  3V5W A;  1X86 A;  4HAX B;  3SNH A;  1AQC A;  1FGY A;  4QJ3 B;  3QBV B;  3A8P A;  1U5D A;  2EJ8 A;  1ISN A;  5LG4 B;  2G35 A;  2K8E A;  2DKQ A;  1UPQ A;  1W1D A;  1WI1 A;  3OHM B;  1Z87 A;  4D6W A;  5L81 A;  4QJ5 B;  5C5B A;  1V5M A;  3NW8 A;  3G9W A;  4KHB B;  2P0D A;  1K5G B;  5C16 A;  3ZVR A;  1NU2 A;  5J3Q A;  1NTV A;  2L2I A;  5D3W A;  3KSY A;  2DHJ A;  1PMS A;  2VRW B;  4HAU B;  2LYD A;  1OMW A;  1U5F A;  1IRS A;  5KQ4 A;  2NBV A;  1I2H A;  3PG7 A;  1X1F A;  2ZPY A;  2CY5 A;  2R0D A;  2YT2 A;  1ZVR A;  5C5B B;  4H8S A;  1SHC A;  1X1G A;  3PVU A;  2Z14 A;  1FGZ A;  1NTY A;  3FM8 C;  1UNQ A;  3PVW A;  3U8Z A;  5D3Y A;  3MPX A;  2KUQ A;  1V89 A;  5KQ1 A;  3X23 A;  1EAZ A;  5D3X A;  1MIX A;  3ODX A;  2DYN A;  2M38 A;  5HE0 A;  4EMO A;  4K81 A;  1NI2 A;  5JP4 A;  1KZ7 A;  2H7D A;  3IVF A;  4DXA B;  2RVB B;  4IAP A;  4A6F B;  2P0F A;  1ZM0 A;  4DX8 A;  3ULC A;  1ZC3 B;  1DDM A;  1MK9 B;  1XX0 A;  4GOU A;  1XCG A;  2YS1 A;  3CIK A;  4XWX A;  1UPR A;  4NY0 A;  4A6K A;  4KHA A;  1Y5O A;  2XQN M;  2R09 A;  5JLJ B;  1Q67 A;  4F7H A;  1KZG A;  2Q13 A;  2W2X C;  1V88 A;  4HHV A;  3HSA A;  1UEF A;  3F0W A;  2K00 A;  3FVC A;  5GOW B;  4YON A;  2R2Y A;  3KRW A;  2V76 A;  2GCJ A;  4ZRJ A;  3P7Z A;  3WA0 A;  2FJL A;  2J0M A;  3SO6 A;  4CHJ A;  4GMV A;  1FHO A;  1P5T A;  1FB8 A;  1EVH A;  3TO1 A; 
#chains in the Genus database with same CATH homology
 1ZYI A;  4QJ5 B;  2KIE A;  4QJ4 B;  3NWD A;  2Z4D A;  5IRS A;  2KR0 A;  4PQ0 A;  4CSQ A;  4HSI A;  2RRF A;  4Z2N A;  3NW8 A;  4IOY X;  3U12 A;  2YT2 A;  4KHB B;  2FJU B;  4Z2M B;  4KHO A;  2ZKM X;  4QXA B;  5I2S A;  3FVC A;  4QJ3 B;  2Z14 A;  4IFS A;  4DIX A;  2R2Y A;  2Z13 A;  5M4Y B;  3FSS A;  3HIE A;  3NWF A;  2GCJ A;  3GYO A;  5I2M A;  3TW1 A;  4L1R A;  2GCL A;  3GYP A;  2KIG A;  3NWA A;  4GOU A;  2GUM A;  4GNK B;  2K49 A;  5LG4 B;  4OT1 A;  2K8E A;  2KUQ A;  3TVV A;  3TO1 A;  3OHM B;  4KHA A;  4OSN A;  2NBV A;  4KHB A;  3A58 A;  4D6W A;  2Z59 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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