3A58A

Crystal structure of sec3p - rho1p complex from saccharomyces cerevisiae
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
185
structure length
185
Chain Sequence
NFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the Rho- and phosphoinositide-dependent localization of the exocyst subunit Sec3
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Protein transport/exocytosis
molecule keywords Exocyst complex component SEC3
total genus 50
structure length 185
sequence length 185
chains with identical sequence C, E
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 3a58A01
5LG4B 3A58A 3HIEA 5M4YB
chains in the Genus database with same CATH superfamily
5JLJB 2EMTA 2YS5A 3ULBA 2LULA 2LOXA 2DHJA 2JP2A 5J3TA 1W1GA 3PVUA 4K17A 3TW1A 3ZVRA 3ML4A 3KY9A 3D8DA 2Q13A 1OY2A 4HB0B 1WVHA 2ADZA 4EMOA 2EMSA 4Y94A 5KQ1A 2D9ZA 2KUPA 4A6HA 4GMXB 2Y7BA 4CHMA 1U5GA 5D3YA 1MAIA 2YSZA 2D9XA 2V76A 1PMSA 4HAWB 1BWNA 4HB3B 1XCGA 1MIZB 4MK0A 2FJUB 1XD4A 5LOPB 3PSCA 2GCJA 1NI2A 5DHFB 1WGQA 1V5MA 3V5WA 1T77A 2CY5A 3HQCA 5J3YA 2GS0A 2YRYA 4WSFA 3ODXA 2DYNA 2R0DA 4HB2B 3TFMA 1MI1A 1EVHA 3TO1A 2DKPA 1WGUA 1X11A 4WVFB 2UVMA 2D9WA 1DBHA 3PZDA 4QXAB 3AJ4A 2L1CA 3OHMB 3O96A 1RRPB 4DBBA 4GN1A 4MY6A 4A6FA 4F7GA 3KZ1A 2W2XC 4K2PA 1DDVA 2UZSA 1K5DB 1UPQA 4HHVA 4WJ7A 2W2XD 3QBVB 2COCA 2XQNM 4CYEA 4A6KA 4HATB 2HTHB 5HE0A 3SV1A 2ELAA 3WA0A 5DI9B 2ROVA 1KZGA 4HDQA 4BBKA 1E5WA 3A98B 2DTCA 1I2HA 2YT1A 3HSAA 3AU4A 1V5PA 4OT1A 2Z4DA 1W1DA 2J0JA 1FB8A 2QKLA 2J0MA 2Y8GA 3CIKA 2D4QA 3DXEA 1ZC4B 4QJ5B 2RLOA 1AWEA 1EF1A 5FI0A 1Y19B 3PVWA 2M14A 1FHOA 4QJ4B 1I7AA 2KIEA 1KZ7A 2KIGA 3SO6A 1V5UA 1FAOA 1P5TA 1WJMA 1MIXA 3WYFB 2N0YA 2RRFA 2I5FA 1UNPA 2D11A 2Z0QA 2CAYA 1BTNA 1OQNA 1U5DA 4K2OA 4CSQA 3SUZA 5JP4A 1KI1B 2IYBA 2P0HA 3PP2A 3D8FA 2DA0A 3QIJA 1MPHA 4A6FB 3LJUX 1U5EA 2N23A 2UZRA 4L1RA 5KCVA 2DX1A 2VRWB 2VSZA 1V89A 2Z59A 1Z87A 3HK0A 4CHJA 1IRSA 2KCJA 1V61A 2EC1A 4IFSA 2RSGA 2MKRA 1DDWA 4HSIA 1MK7B 3KRWA 4K81A 4ZRIA 5C79A 1SGHA 3PVLA 2ZPYA 4PNKA 4OSNA 1TJ6A 5D3XA 1Q67A 3DCXA 2AEHA 4C0AA 1U5FA 2BCJA 1ZVRA 5D3WA 4YONA 2RUKB 1WI1A 2K2UA 4NY0A 5FI1A 4DX90 3P6AA 2COAA 2M38A 2RVBB 4YL8A 2DN6A 2KUQA 4KHOA 3ODWA 3GYOA 4DIXA 4GXBA 5M4YB 5HE1A 1H4RA 2LKOA 4HAZB 2YT0A 1BTKA 3QWMA 2RGNB 1TXDA 2LYDA 2D10A 2CY4A 1TQZA 2I1KA 4KHAA 4QJ3B 2Y8FA 2DHIA 4IOYX 4GOUA 2DFKA 1X86A 4ZRJA 3A8PA 2R09A 4KAXB 3BINA 4GNKB 2HE7A 1XX0A 3G9WA 1FHWA 3X23A 2MWNB 5JHHA 1BAKA 1LW3A 4GPTB 2DLWA 2DYQA 3OANA 1M7RA 2YF0A 3U12A 2EJ8A 1W1HA 3NWDA 5J3QA 1MKEA 1M7EA 5D27A 3F5RA 4D0NB 2Z0PA 2DKQA 4GMVA 1WG7A 4HDOA 3TCAA 1DROA 4HAVB 2NBVA 2I5CA 2Z0OA 1LB1A 2OQBA 4Z2NA 4KHBB 2VKIA 3KSYA 1UNRA 1RJ2A 1XKEA 1X1GA 5IRSA 3FM8C 1ZSQA 3HIEA 5GOWB 3ULCA 2COFA 3FEHA 4HB4B 5C5BA 1U27A 3CXBB 2FJLA 4TYZA 1EAZA 3M1IB 1NU2A 4DXAB 3AU5A 3DXDA 4ZRKA 5KQ4A 2P8VA 5I2SA 2P0DA 1J19A 4KVGB 3IVFA 2E2XA 2W2WA 1NTVA 4KHBA 3A58A 1GG3A 2LOZA 3MDBC 3N7CA 3U8ZA 3VOQA 4P7IA 1XR0B 2GJYA 1X05A 5DIFB 1FHXA 2P0FA 2DX5A 1DYNA 2LG1A 2KGXB 4EJNA 2GCLA 4Z2MB 2Z13A 2AL6A 3UZTA 3D8EA 4DX8A 5I2MA 3P7ZA 2R2YA 2QKMA 1FOEA 1GC6A 2H7DA 1PFJA 4NSWA 5HE2A 3ZDTA 2DHKA 5DH9B 1H10A 2I1JA 1UNQA 5JHGA 2D9YA 4EKUA 2K8EA 2NMBA 3PEGA 3NSUA 5LG4B 1SHCA 2MFQA 5LONB 2CRFA 2K49A 1N3HA 2KR0A 5D3VA 1ZYIA 1QQGA 2D9VA 1V88A 4GZUA 1ISNA 1P3RA 1FGZA 2GUMA 1XODA 3TVVA 4HAUB 2MDXA 1B55A 1OMWA 2L2IA 1J0WA 5DHAB 2H7EA 2YS1A 1U2BA 3B77A 1U29A 4B6HA 5C5BB 4HAXB 5HE3A 4D6WA 3KRXA 1UEFA 3U7DA 5C6RA 3MPXA 4HAYB 4F7HA 1QC6A 2X18A 2K2JA 4PQ0A 2OTXA 3DXCA 5CLQB 1Y5OA 1MK9B 3NWFA 3BJIA 1NTYA 1ZC3B 3PG7A 1P6SA 1GC7A 3FSSA 4TKNA 3F0WA 1X1FA 1EGXA 4IAPA 5CLLB 5EFXA 2ZKMX 2YS3A 1PLSA 1UPRA 3RCPA 2ELBA 2J0KA 2RNRB 4H8SA 1K5GB 2YVCA 3NW8A 3GYPA 3T06A 3NWAA 4L6EA 3FVCA 2Z14A 3SYXA 5C16A 2YT2A 3HW2B 2IFSA 2NZ8B 2PZ1A 2D2QA 3ODOA 1WJ1A 2ROZB 4F7UP 3A8QA 1DDMA 2G35A 1FGYA 1AQCA 2J59M 5L81A 4XWXA 1ZM0A 2CODA 4MT7A 4A5KA 3SNHA 3VIAA 2K00A
chains in the Genus database with same CATH topology
4GOUA 3TO1A 4IFSA 4QJ5B 2YT2A 4HSIA 2KUQA 4CSQA 2K8EA 4KHOA 2NBVA 4QJ4B 2FJUB 3FSSA 4GNKB 4D6WA 2GCJA 2KIEA 5LG4B 2KIGA 3TW1A 3GYOA 2K49A 4OT1A 2GCLA 4QXAB 4Z2MB 2ZKMX 4DIXA 5I2SA 2Z13A 2KR0A 4Z2NA 3OHMB 4KHBB 5M4YB 4OSNA 2Z4DA 1ZYIA 5I2MA 4L1RA 5IRSA 3NW8A 4KHBA 2R2YA 3A58A 4PQ0A 3HIEA 2GUMA 2Z59A 3GYPA 3TVVA 3U12A 2RRFA 3NWAA 3NWFA 4KHAA 3NWDA 4QJ3B 3FVCA 4IOYX 2Z14A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LG4 B;  3A58 A;  3HIE A;  5M4Y B; 
#chains in the Genus database with same CATH topology
 5JLJ B;  2EMT A;  2YS5 A;  3ULB A;  2LUL A;  2LOX A;  2DHJ A;  2JP2 A;  5J3T A;  1W1G A;  3PVU A;  4K17 A;  3TW1 A;  3ZVR A;  3ML4 A;  3KY9 A;  3D8D A;  2Q13 A;  1OY2 A;  4HB0 B;  1WVH A;  2ADZ A;  4EMO A;  2EMS A;  4Y94 A;  5KQ1 A;  2D9Z A;  2KUP A;  4A6H A;  4GMX B;  2Y7B A;  4CHM A;  1U5G A;  5D3Y A;  1MAI A;  2YSZ A;  2D9X A;  2V76 A;  1PMS A;  4HAW B;  1BWN A;  4HB3 B;  1XCG A;  1MIZ B;  4MK0 A;  2FJU B;  1XD4 A;  5LOP B;  3PSC A;  2GCJ A;  1NI2 A;  5DHF B;  1WGQ A;  1V5M A;  3V5W A;  1T77 A;  2CY5 A;  3HQC A;  5J3Y A;  2GS0 A;  2YRY A;  4WSF A;  3ODX A;  2DYN A;  2R0D A;  4HB2 B;  3TFM A;  1MI1 A;  1EVH A;  3TO1 A;  2DKP A;  1WGU A;  1X11 A;  4WVF B;  2UVM A;  2D9W A;  1DBH A;  3PZD A;  4QXA B;  3AJ4 A;  2L1C A;  3OHM B;  3O96 A;  1RRP B;  4DBB A;  4GN1 A;  4MY6 A;  4A6F A;  4F7G A;  3KZ1 A;  2W2X C;  4K2P A;  1DDV A;  2UZS A;  1K5D B;  1UPQ A;  4HHV A;  4WJ7 A;  2W2X D;  3QBV B;  2COC A;  2XQN M;  4CYE A;  4A6K A;  4HAT B;  2HTH B;  5HE0 A;  3SV1 A;  2ELA A;  3WA0 A;  5DI9 B;  2ROV A;  1KZG A;  4HDQ A;  4BBK A;  1E5W A;  3A98 B;  2DTC A;  1I2H A;  2YT1 A;  3HSA A;  3AU4 A;  1V5P A;  4OT1 A;  2Z4D A;  1W1D A;  2J0J A;  1FB8 A;  2QKL A;  2J0M A;  2Y8G A;  3CIK A;  2D4Q A;  3DXE A;  1ZC4 B;  4QJ5 B;  2RLO A;  1AWE A;  1EF1 A;  5FI0 A;  1Y19 B;  3PVW A;  2M14 A;  1FHO A;  4QJ4 B;  1I7A A;  2KIE A;  1KZ7 A;  2KIG A;  3SO6 A;  1V5U A;  1FAO A;  1P5T A;  1WJM A;  1MIX A;  3WYF B;  2N0Y A;  2RRF A;  2I5F A;  1UNP A;  2D11 A;  2Z0Q A;  2CAY A;  1BTN A;  1OQN A;  1U5D A;  4K2O A;  4CSQ A;  3SUZ A;  5JP4 A;  1KI1 B;  2IYB A;  2P0H A;  3PP2 A;  3D8F A;  2DA0 A;  3QIJ A;  1MPH A;  4A6F B;  3LJU X;  1U5E A;  2N23 A;  2UZR A;  4L1R A;  5KCV A;  2DX1 A;  2VRW B;  2VSZ A;  1V89 A;  2Z59 A;  1Z87 A;  3HK0 A;  4CHJ A;  1IRS A;  2KCJ A;  1V61 A;  2EC1 A;  4IFS A;  2RSG A;  2MKR A;  1DDW A;  4HSI A;  1MK7 B;  3KRW A;  4K81 A;  4ZRI A;  5C79 A;  1SGH A;  3PVL A;  2ZPY A;  4PNK A;  4OSN A;  1TJ6 A;  5D3X A;  1Q67 A;  3DCX A;  2AEH A;  4C0A A;  1U5F A;  2BCJ A;  1ZVR A;  5D3W A;  4YON A;  2RUK B;  1WI1 A;  2K2U A;  4NY0 A;  5FI1 A;  4DX9 0;  3P6A A;  2COA A;  2M38 A;  2RVB B;  4YL8 A;  2DN6 A;  2KUQ A;  4KHO A;  3ODW A;  3GYO A;  4DIX A;  4GXB A;  5M4Y B;  5HE1 A;  1H4R A;  2LKO A;  4HAZ B;  2YT0 A;  1BTK A;  3QWM A;  2RGN B;  1TXD A;  2LYD A;  2D10 A;  2CY4 A;  1TQZ A;  2I1K A;  4KHA A;  4QJ3 B;  2Y8F A;  2DHI A;  4IOY X;  4GOU A;  2DFK A;  1X86 A;  4ZRJ A;  3A8P A;  2R09 A;  4KAX B;  3BIN A;  4GNK B;  2HE7 A;  1XX0 A;  3G9W A;  1FHW A;  3X23 A;  2MWN B;  5JHH A;  1BAK A;  1LW3 A;  4GPT B;  2DLW A;  2DYQ A;  3OAN A;  1M7R A;  2YF0 A;  3U12 A;  2EJ8 A;  1W1H A;  3NWD A;  5J3Q A;  1MKE A;  1M7E A;  5D27 A;  3F5R A;  4D0N B;  2Z0P A;  2DKQ A;  4GMV A;  1WG7 A;  4HDO A;  3TCA A;  1DRO A;  4HAV B;  2NBV A;  2I5C A;  2Z0O A;  1LB1 A;  2OQB A;  4Z2N A;  4KHB B;  2VKI A;  3KSY A;  1UNR A;  1RJ2 A;  1XKE A;  1X1G A;  5IRS A;  3FM8 C;  1ZSQ A;  3HIE A;  5GOW B;  3ULC A;  2COF A;  3FEH A;  4HB4 B;  5C5B A;  1U27 A;  3CXB B;  2FJL A;  4TYZ A;  1EAZ A;  3M1I B;  1NU2 A;  4DXA B;  3AU5 A;  3DXD A;  4ZRK A;  5KQ4 A;  2P8V A;  5I2S A;  2P0D A;  1J19 A;  4KVG B;  3IVF A;  2E2X A;  2W2W A;  1NTV A;  4KHB A;  3A58 A;  1GG3 A;  2LOZ A;  3MDB C;  3N7C A;  3U8Z A;  3VOQ A;  4P7I A;  1XR0 B;  2GJY A;  1X05 A;  5DIF B;  1FHX A;  2P0F A;  2DX5 A;  1DYN A;  2LG1 A;  2KGX B;  4EJN A;  2GCL A;  4Z2M B;  2Z13 A;  2AL6 A;  3UZT A;  3D8E A;  4DX8 A;  5I2M A;  3P7Z A;  2R2Y A;  2QKM A;  1FOE A;  1GC6 A;  2H7D A;  1PFJ A;  4NSW A;  5HE2 A;  3ZDT A;  2DHK A;  5DH9 B;  1H10 A;  2I1J A;  1UNQ A;  5JHG A;  2D9Y A;  4EKU A;  2K8E A;  2NMB A;  3PEG A;  3NSU A;  5LG4 B;  1SHC A;  2MFQ A;  5LON B;  2CRF A;  2K49 A;  1N3H A;  2KR0 A;  5D3V A;  1ZYI A;  1QQG A;  2D9V A;  1V88 A;  4GZU A;  1ISN A;  1P3R A;  1FGZ A;  2GUM A;  1XOD A;  3TVV A;  4HAU B;  2MDX A;  1B55 A;  1OMW A;  2L2I A;  1J0W A;  5DHA B;  2H7E A;  2YS1 A;  1U2B A;  3B77 A;  1U29 A;  4B6H A;  5C5B B;  4HAX B;  5HE3 A;  4D6W A;  3KRX A;  1UEF A;  3U7D A;  5C6R A;  3MPX A;  4HAY B;  4F7H A;  1QC6 A;  2X18 A;  2K2J A;  4PQ0 A;  2OTX A;  3DXC A;  5CLQ B;  1Y5O A;  1MK9 B;  3NWF A;  3BJI A;  1NTY A;  1ZC3 B;  3PG7 A;  1P6S A;  1GC7 A;  3FSS A;  4TKN A;  3F0W A;  1X1F A;  1EGX A;  4IAP A;  5CLL B;  5EFX A;  2ZKM X;  2YS3 A;  1PLS A;  1UPR A;  3RCP A;  2ELB A;  2J0K A;  2RNR B;  4H8S A;  1K5G B;  2YVC A;  3NW8 A;  3GYP A;  3T06 A;  3NWA A;  4L6E A;  3FVC A;  2Z14 A;  3SYX A;  5C16 A;  2YT2 A;  3HW2 B;  2IFS A;  2NZ8 B;  2PZ1 A;  2D2Q A;  3ODO A;  1WJ1 A;  2ROZ B;  4F7U P;  3A8Q A;  1DDM A;  2G35 A;  1FGY A;  1AQC A;  2J59 M;  5L81 A;  4XWX A;  1ZM0 A;  2COD A;  4MT7 A;  4A5K A;  3SNH A;  3VIA A;  2K00 A; 
#chains in the Genus database with same CATH homology
 4GOU A;  3TO1 A;  4IFS A;  4QJ5 B;  2YT2 A;  4HSI A;  2KUQ A;  4CSQ A;  2K8E A;  4KHO A;  2NBV A;  4QJ4 B;  2FJU B;  3FSS A;  4GNK B;  4D6W A;  2GCJ A;  2KIE A;  5LG4 B;  2KIG A;  3TW1 A;  3GYO A;  2K49 A;  4OT1 A;  2GCL A;  4QXA B;  4Z2M B;  2ZKM X;  4DIX A;  5I2S A;  2Z13 A;  2KR0 A;  4Z2N A;  3OHM B;  4KHB B;  5M4Y B;  4OSN A;  2Z4D A;  1ZYI A;  5I2M A;  4L1R A;  5IRS A;  3NW8 A;  4KHB A;  2R2Y A;  3A58 A;  4PQ0 A;  3HIE A;  2GUM A;  2Z59 A;  3GYP A;  3TVV A;  3U12 A;  2RRF A;  3NWA A;  3NWF A;  4KHA A;  3NWD A;  4QJ3 B;  3FVC A;  4IOY X;  2Z14 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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