3A58A

Crystal structure of sec3p - rho1p complex from saccharomyces cerevisiae
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
185
structure length
185
Chain Sequence
NFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport/exocytosis
molecule keywords Exocyst complex component SEC3
publication title Structural basis for the Rho- and phosphoinositide-dependent localization of the exocyst subunit Sec3
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 50
structure length 185
sequence length 185
chains with identical sequence C, E
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15277 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.90 Mainly Beta Roll PH-domain like PH-domain like 3a58A01
3A58A 5M4YB 3HIEA 5LG4B
chains in the Genus database with same CATH superfamily
2I1KA 4PNKA 4CSQA 3ZVRA 3F0WA 4HAXB 3NWDA 2Z4DA 4OT1A 2MFQA 3O96A 2RGNB 3PVWA 4HDOA 1UNPA 2ROZB 1U5DA 4B6HA 2GS0A 3D8FA 1T77A 1BWNA 1FGYA 3GYOA 4C0AA 2CY4A 2UVMA 2Z0PA 2HTHB 5DHFB 2M38A 1X05A 2DHJA 5DH9B 2RRFA 4ZRJA 3FVCA 2D9XA 2RNRB 2AL6A 4QJ5B 4ZRKA 2P8VA 5C5BA 2MWNB 2K2UA 3VOQA 3AU4A 4BBKA 4A6FA 3ODWA 1FHWA 1N3HA 2M14A 1BTNA 3FEHA 4A5KA 1BTKA 1XODA 2E2XA 2RVBB 1U5GA 3DXCA 4HB3B 2KCJA 3KSYA 4GXBA 1PMSA 3AJ4A 1DDMA 5KCVA 2J0KA 1UNQA 2DYNA 1V5UA 2N23A 2YT2A 2DKQA 4HHVA 5D3WA 2X18A 2Y7BA 4DXAB 3B77A 1MAIA 2HE7A 4KHAA 1BAKA 1P3RA 1H4RA 3SUZA 4XWXA 1DBHA 4EMOA 1P5TA 2GCLA 4MT7A 5JHHA 1WG7A 2ZKMX 2H7EA 1MIXA 2KR0A 2YS1A 5C6RA 1W1HA 1WJMA 2G35A 2DA0A 2W2WA 2LOXA 1LB1A 3D8DA 3ODOA 3U7DA 4A6KA 3NWFA 2Z14A 4DBBA 2COFA 3WYFB 3A8PA 1MK9B 4WJ7A 2Y8FA 1FB8A 1Z87A 4Y94A 4Z2NA 4PQ0A 3X23A 5HE2A 1TXDA 3D8EA 1WGUA 5FI0A 4KHBA 1EVHA 1X1FA 1NTVA 3DCXA 1U2BA 3VIAA 5L81A 1H10A 4L1RA 5D3XA 2DN6A 1K5GB 1KZ7A 1FHOA 1TQZA 3TFMA 2LYDA 3A98B 2D9WA 2R2YA 4DIXA 2EC1A 3SNHA 1MPHA 2LOZA 4KVGB 2D4QA 3QBVB 3SYXA 5JHGA 2GCJA 2DHKA 2DX5A 4TKNA 5I2MA 1NU2A 1QQGA 1V89A 4IAPA 5D3YA 2XQNM 2OTXA 4P7IA 3U8ZA 3ULCA 1AWEA 2D2QA 2Y8GA 3BINA 4CHMA 2DTCA 1K5DB 1V61A 5C16A 2J0JA 4HAYB 1I2HA 2D9YA 1EAZA 3ML4A 1ZC3B 4QXAB 1KZGA 2IFSA 4Z2MB 1XCGA 3PVUA 1W1DA 3TCAA 2DKPA 2K00A 2KIGA 2W2XD 1QC6A 1XKEA 3ODXA 2DX1A 2D11A 1U27A 3QIJA 3MPXA 3PVLA 4CHJA 4HB0B 2LULA 2VRWB 2KGXB 2ELAA 3PZDA 4K81A 1UNRA 3SV1A 4YL8A 1WJ1A 3DXDA 5CLLB 1GG3A 2UZSA 2YS3A 1RJ2A 4F7UP 2OQBA 3FSSA 3KZ1A 1B55A 4HAZB 4DX8A 2J0MA 1OMWA 1DYNA 4GMVA 4WSFA 1SHCA 1V5MA 1UPQA 2I1JA 4HAVB 4ZRIA 2EMTA 1V5PA 2Q13A 3DXEA 1XD4A 2KIEA 1U5FA 4KAXB 3PG7A 5LG4B 1GC6A 1M7EA 3HK0A 2YT0A 2DHIA 5HE0A 3OANA 5I2SA 2LG1A 2KUPA 3KRXA 2ELBA 3PSCA 1KI1B 2KUQA 2YVCA 2VKIA 1M7RA 3AU5A 2PZ1A 5C79A 3ULBA 4EJNA 2K2JA 3A8QA 1ZM0A 1P6SA 1UPRA 3UZTA 3V5WA 1X1GA 4HB2B 1NI2A 5J3YA 2UZRA 3A58A 3KRWA 1FAOA 1FGZA 2YRYA 1MK7B 2CODA 1XX0A 2AEHA 4QJ3B 3RCPA 2Z13A 3HIEA 1U29A 2Z59A 2NBVA 5C5BB 1ZYIA 2K49A 3LJUX 3PEGA 4A6FB 1MI1A 1XR0B 1ZVRA 3SO6A 1UEFA 4K17A 3F5RA 1PFJA 2R0DA 4L6EA 2RLOA 2ADZA 4DX90 2GUMA 2Z0OA 2V76A 3OHMB 2VSZA 2EJ8A 1WGQA 4K2OA 2YT1A 1TJ6A 3NWAA 3KY9A 2W2XC 1J0WA 3TW1A 3T06A 5EFXA 3TVVA 2JP2A 4A6HA 1OQNA 2ZPYA 3NSUA 5J3QA 2LKOA 5JP4A 1Y5OA 4HAWB 5DIFB 4IFSA 2QKMA 2FJUB 5HE3A 2H7DA 4KHOA 1Q67A 5KQ4A 5DHAB 2D9VA 1E5WA 5HE1A 1DDVA 2N0YA 4F7HA 1Y19B 3P6AA 4GZUA 1DDWA 3HW2B 4GMXB 2L1CA 2K8EA 1EGXA 3FM8C 2D10A 2J59M 4HB4B 5D3VA 4EKUA 3IVFA 4MY6A 1AQCA 4H8SA 5JLJB 2COCA 4GN1A 2YS5A 2P0FA 3P7ZA 5GOWB 4NSWA 1W1GA 4KHBB 1LW3A 2D9ZA 3M1IB 2R09A 2I5FA 1V88A 3N7CA 2CAYA 1X86A 1MKEA 2EMSA 5LOPB 2NZ8B 4HATB 2L2IA 1ZC4B 5D27A 2I5CA 1X11A 5J3TA 1I7AA 4D6WA 4GPTB 3HSAA 1WVHA 3BJIA 1OY2A 4HAUB 2YSZA 4HSIA 4OSNA 1EF1A 5IRSA 3G9WA 3CXBB 4MK0A 3PP2A 2DLWA 2P0HA 4GOUA 2BCJA 2COAA 4D0NB 4HDQA 4CYEA 1IRSA 2CY5A 3WA0A 1PLSA 4TYZA 2ROVA 2GJYA 1ISNA 2CRFA 2IYBA 2DYQA 1FOEA 1NTYA 2P0DA 1U5EA 3ZDTA 4YONA 1FHXA 1SGHA 1WI1A 1ZSQA 1GC7A 3QWMA 4IOYX 4NY0A 2MKRA 3U12A 2RSGA 4QJ4B 2DFKA 1J19A 5CLQB 2QKLA 2RUKB 5FI1A 2MDXA 3CIKA 1RRPB 3TO1A 5M4YB 1MIZB 4F7GA 1DROA 3HQCA 3GYPA 5LONB 4GNKB 5KQ1A 3MDBC 4WVFB 2Z0QA 2FJLA 2NMBA 3NW8A 4K2PA 2YF0A 5DI9B
chains in the Genus database with same CATH topology
3NWAA 2KIEA 2ZKMX 3TW1A 2KR0A 4GOUA 4IOYX 4KHBA 3TVVA 5LG4B 4QJ4B 3U12A 4D6WA 2GCJA 4CSQA 4QXAB 2RRFA 4Z2MB 3FVCA 3NWDA 2Z4DA 4L1RA 5I2MA 5I2SA 4IFSA 2FJUB 3FSSA 4OT1A 4QJ5B 2YT2A 2KIGA 4KHBB 3TO1A 5M4YB 4HSIA 2KUQA 3A58A 4KHOA 4OSNA 3NWFA 2Z14A 3GYPA 4GNKB 4QJ3B 5IRSA 2Z13A 2GUMA 3HIEA 4KHAA 3GYOA 2R2YA 2K8EA 2NBVA 2Z59A 3OHMB 1ZYIA 4DIXA 2K49A 4Z2NA 3NW8A 4PQ0A 2GCLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A58 A;  5M4Y B;  3HIE A;  5LG4 B; 
#chains in the Genus database with same CATH topology
 2I1K A;  4PNK A;  4CSQ A;  3ZVR A;  3F0W A;  4HAX B;  3NWD A;  2Z4D A;  4OT1 A;  2MFQ A;  3O96 A;  2RGN B;  3PVW A;  4HDO A;  1UNP A;  2ROZ B;  1U5D A;  4B6H A;  2GS0 A;  3D8F A;  1T77 A;  1BWN A;  1FGY A;  3GYO A;  4C0A A;  2CY4 A;  2UVM A;  2Z0P A;  2HTH B;  5DHF B;  2M38 A;  1X05 A;  2DHJ A;  5DH9 B;  2RRF A;  4ZRJ A;  3FVC A;  2D9X A;  2RNR B;  2AL6 A;  4QJ5 B;  4ZRK A;  2P8V A;  5C5B A;  2MWN B;  2K2U A;  3VOQ A;  3AU4 A;  4BBK A;  4A6F A;  3ODW A;  1FHW A;  1N3H A;  2M14 A;  1BTN A;  3FEH A;  4A5K A;  1BTK A;  1XOD A;  2E2X A;  2RVB B;  1U5G A;  3DXC A;  4HB3 B;  2KCJ A;  3KSY A;  4GXB A;  1PMS A;  3AJ4 A;  1DDM A;  5KCV A;  2J0K A;  1UNQ A;  2DYN A;  1V5U A;  2N23 A;  2YT2 A;  2DKQ A;  4HHV A;  5D3W A;  2X18 A;  2Y7B A;  4DXA B;  3B77 A;  1MAI A;  2HE7 A;  4KHA A;  1BAK A;  1P3R A;  1H4R A;  3SUZ A;  4XWX A;  1DBH A;  4EMO A;  1P5T A;  2GCL A;  4MT7 A;  5JHH A;  1WG7 A;  2ZKM X;  2H7E A;  1MIX A;  2KR0 A;  2YS1 A;  5C6R A;  1W1H A;  1WJM A;  2G35 A;  2DA0 A;  2W2W A;  2LOX A;  1LB1 A;  3D8D A;  3ODO A;  3U7D A;  4A6K A;  3NWF A;  2Z14 A;  4DBB A;  2COF A;  3WYF B;  3A8P A;  1MK9 B;  4WJ7 A;  2Y8F A;  1FB8 A;  1Z87 A;  4Y94 A;  4Z2N A;  4PQ0 A;  3X23 A;  5HE2 A;  1TXD A;  3D8E A;  1WGU A;  5FI0 A;  4KHB A;  1EVH A;  1X1F A;  1NTV A;  3DCX A;  1U2B A;  3VIA A;  5L81 A;  1H10 A;  4L1R A;  5D3X A;  2DN6 A;  1K5G B;  1KZ7 A;  1FHO A;  1TQZ A;  3TFM A;  2LYD A;  3A98 B;  2D9W A;  2R2Y A;  4DIX A;  2EC1 A;  3SNH A;  1MPH A;  2LOZ A;  4KVG B;  2D4Q A;  3QBV B;  3SYX A;  5JHG A;  2GCJ A;  2DHK A;  2DX5 A;  4TKN A;  5I2M A;  1NU2 A;  1QQG A;  1V89 A;  4IAP A;  5D3Y A;  2XQN M;  2OTX A;  4P7I A;  3U8Z A;  3ULC A;  1AWE A;  2D2Q A;  2Y8G A;  3BIN A;  4CHM A;  2DTC A;  1K5D B;  1V61 A;  5C16 A;  2J0J A;  4HAY B;  1I2H A;  2D9Y A;  1EAZ A;  3ML4 A;  1ZC3 B;  4QXA B;  1KZG A;  2IFS A;  4Z2M B;  1XCG A;  3PVU A;  1W1D A;  3TCA A;  2DKP A;  2K00 A;  2KIG A;  2W2X D;  1QC6 A;  1XKE A;  3ODX A;  2DX1 A;  2D11 A;  1U27 A;  3QIJ A;  3MPX A;  3PVL A;  4CHJ A;  4HB0 B;  2LUL A;  2VRW B;  2KGX B;  2ELA A;  3PZD A;  4K81 A;  1UNR A;  3SV1 A;  4YL8 A;  1WJ1 A;  3DXD A;  5CLL B;  1GG3 A;  2UZS A;  2YS3 A;  1RJ2 A;  4F7U P;  2OQB A;  3FSS A;  3KZ1 A;  1B55 A;  4HAZ B;  4DX8 A;  2J0M A;  1OMW A;  1DYN A;  4GMV A;  4WSF A;  1SHC A;  1V5M A;  1UPQ A;  2I1J A;  4HAV B;  4ZRI A;  2EMT A;  1V5P A;  2Q13 A;  3DXE A;  1XD4 A;  2KIE A;  1U5F A;  4KAX B;  3PG7 A;  5LG4 B;  1GC6 A;  1M7E A;  3HK0 A;  2YT0 A;  2DHI A;  5HE0 A;  3OAN A;  5I2S A;  2LG1 A;  2KUP A;  3KRX A;  2ELB A;  3PSC A;  1KI1 B;  2KUQ A;  2YVC A;  2VKI A;  1M7R A;  3AU5 A;  2PZ1 A;  5C79 A;  3ULB A;  4EJN A;  2K2J A;  3A8Q A;  1ZM0 A;  1P6S A;  1UPR A;  3UZT A;  3V5W A;  1X1G A;  4HB2 B;  1NI2 A;  5J3Y A;  2UZR A;  3A58 A;  3KRW A;  1FAO A;  1FGZ A;  2YRY A;  1MK7 B;  2COD A;  1XX0 A;  2AEH A;  4QJ3 B;  3RCP A;  2Z13 A;  3HIE A;  1U29 A;  2Z59 A;  2NBV A;  5C5B B;  1ZYI A;  2K49 A;  3LJU X;  3PEG A;  4A6F B;  1MI1 A;  1XR0 B;  1ZVR A;  3SO6 A;  1UEF A;  4K17 A;  3F5R A;  1PFJ A;  2R0D A;  4L6E A;  2RLO A;  2ADZ A;  4DX9 0;  2GUM A;  2Z0O A;  2V76 A;  3OHM B;  2VSZ A;  2EJ8 A;  1WGQ A;  4K2O A;  2YT1 A;  1TJ6 A;  3NWA A;  3KY9 A;  2W2X C;  1J0W A;  3TW1 A;  3T06 A;  5EFX A;  3TVV A;  2JP2 A;  4A6H A;  1OQN A;  2ZPY A;  3NSU A;  5J3Q A;  2LKO A;  5JP4 A;  1Y5O A;  4HAW B;  5DIF B;  4IFS A;  2QKM A;  2FJU B;  5HE3 A;  2H7D A;  4KHO A;  1Q67 A;  5KQ4 A;  5DHA B;  2D9V A;  1E5W A;  5HE1 A;  1DDV A;  2N0Y A;  4F7H A;  1Y19 B;  3P6A A;  4GZU A;  1DDW A;  3HW2 B;  4GMX B;  2L1C A;  2K8E A;  1EGX A;  3FM8 C;  2D10 A;  2J59 M;  4HB4 B;  5D3V A;  4EKU A;  3IVF A;  4MY6 A;  1AQC A;  4H8S A;  5JLJ B;  2COC A;  4GN1 A;  2YS5 A;  2P0F A;  3P7Z A;  5GOW B;  4NSW A;  1W1G A;  4KHB B;  1LW3 A;  2D9Z A;  3M1I B;  2R09 A;  2I5F A;  1V88 A;  3N7C A;  2CAY A;  1X86 A;  1MKE A;  2EMS A;  5LOP B;  2NZ8 B;  4HAT B;  2L2I A;  1ZC4 B;  5D27 A;  2I5C A;  1X11 A;  5J3T A;  1I7A A;  4D6W A;  4GPT B;  3HSA A;  1WVH A;  3BJI A;  1OY2 A;  4HAU B;  2YSZ A;  4HSI A;  4OSN A;  1EF1 A;  5IRS A;  3G9W A;  3CXB B;  4MK0 A;  3PP2 A;  2DLW A;  2P0H A;  4GOU A;  2BCJ A;  2COA A;  4D0N B;  4HDQ A;  4CYE A;  1IRS A;  2CY5 A;  3WA0 A;  1PLS A;  4TYZ A;  2ROV A;  2GJY A;  1ISN A;  2CRF A;  2IYB A;  2DYQ A;  1FOE A;  1NTY A;  2P0D A;  1U5E A;  3ZDT A;  4YON A;  1FHX A;  1SGH A;  1WI1 A;  1ZSQ A;  1GC7 A;  3QWM A;  4IOY X;  4NY0 A;  2MKR A;  3U12 A;  2RSG A;  4QJ4 B;  2DFK A;  1J19 A;  5CLQ B;  2QKL A;  2RUK B;  5FI1 A;  2MDX A;  3CIK A;  1RRP B;  3TO1 A;  5M4Y B;  1MIZ B;  4F7G A;  1DRO A;  3HQC A;  3GYP A;  5LON B;  4GNK B;  5KQ1 A;  3MDB C;  4WVF B;  2Z0Q A;  2FJL A;  2NMB A;  3NW8 A;  4K2P A;  2YF0 A;  5DI9 B; 
#chains in the Genus database with same CATH homology
 3NWA A;  2KIE A;  2ZKM X;  3TW1 A;  2KR0 A;  4GOU A;  4IOY X;  4KHB A;  3TVV A;  5LG4 B;  4QJ4 B;  3U12 A;  4D6W A;  2GCJ A;  4CSQ A;  4QXA B;  2RRF A;  4Z2M B;  3FVC A;  3NWD A;  2Z4D A;  4L1R A;  5I2M A;  5I2S A;  4IFS A;  2FJU B;  3FSS A;  4OT1 A;  4QJ5 B;  2YT2 A;  2KIG A;  4KHB B;  3TO1 A;  5M4Y B;  4HSI A;  2KUQ A;  3A58 A;  4KHO A;  4OSN A;  3NWF A;  2Z14 A;  3GYP A;  4GNK B;  4QJ3 B;  5IRS A;  2Z13 A;  2GUM A;  3HIE A;  4KHA A;  3GYO A;  2R2Y A;  2K8E A;  2NBV A;  2Z59 A;  3OHM B;  1ZYI A;  4DIX A;  2K49 A;  4Z2N A;  3NW8 A;  4PQ0 A;  2GCL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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