2R2YA

Crystal structure of the proteasomal rpn13 pru-domain
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
109
structure length
109
Chain Sequence
YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein ADRM1
publication title Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction.
pubmed doi rcsb
source organism Mus musculus
molecule tags Protein binding
total genus 27
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2007-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04683 Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.70 Mainly Beta Roll PH-domain like PH-domain like 2r2yA00
5IRSA 2KR0A 2Z59A 2Z4DA 2NBVA 2R2YA
chains in the Genus database with same CATH superfamily
1U5FA 1H10A 2D9ZA 4DBBA 2EMSA 1WJ1A 3ZDTA 2Z59A 1DDWA 1FHOA 5DHAB 5I2MA 2D9XA 3TFMA 3HK0A 1SHCA 5GOWB 1K5GB 2EMTA 3DXDA 3RCPA 1X86A 4D6WA 2IYBA 1KZ7A 4CHMA 2CY4A 4HAWB 3PG7A 5LONB 3GYPA 4EMOA 1IRSA 3AU5A 4ZRJA 5FI1A 1OMWA 2HE7A 1Y5OA 2J0MA 1FB8A 2P0DA 3HIEA 2DN6A 5JHHA 4GMVA 2KGXB 1V5MA 4A5KA 1DYNA 3SUZA 2ZKMX 3PP2A 4MT7A 1SGHA 2M38A 4Z2NA 2CRFA 2RGNB 2W2XD 1U2BA 1WI1A 2R2YA 1NU2A 3G9WA 2YSZA 1P6SA 3GYOA 1MIZB 3AJ4A 2KUPA 1FOEA 4K2OA 3X23A 2P0HA 4HSIA 1WVHA 3VIAA 3B77A 2YS3A 4KVGB 2ELAA 2N23A 4GMXB 2DLWA 4Z2MB 2CY5A 3BJIA 5L81A 3D8EA 2D9WA 1EF1A 3SO6A 1GC7A 1PFJA 2DX1A 4GZUA 3SYXA 2RUKB 4QXAB 3WA0A 1WG7A 2LG1A 3PSCA 1ZVRA 2UZSA 2NMBA 1B55A 5FI0A 3TO1A 3BINA 1M7EA 5EFXA 5DI9B 1ZC3B 2J0JA 4NSWA 1P3RA 1ISNA 4HHVA 2DTCA 2I5CA 5DHFB 5D3XA 1NI2A 4TKNA 1AWEA 4GN1A 4HAZB 1FHXA 2QKMA 2GCJA 2MWNB 5HE1A 3D8DA 1ZSQA 1U29A 1EVHA 1E5WA 4MK0A 2DHIA 3KSYA 4YL8A 2AL6A 1X11A 2VRWB 2XQNM 4KHAA 1H4RA 5D3WA 5JLJB 3ULBA 1DDVA 4HB3B 1ZM0A 2V76A 3WYFB 5D27A 5C5BA 2ZPYA 4L1RA 2LKOA 4HB4B 2COFA 3FEHA 1TQZA 5D3VA 3NW8A 2I5FA 1EAZA 2G35A 1V5UA 2K00A 1V89A 3D8FA 4K81A 3A98B 4A6FB 4C0AA 4F7UP 2COAA 4A6KA 1FAOA 2R0DA 5CLQB 4GOUA 5DIFB 2UVMA 1BTKA 3DXCA 1RJ2A 2I1JA 2Z0PA 1UPQA 3SNHA 1V5PA 2I1KA 4HB0B 5J3QA 4Y94A 1GC6A 1Q67A 2DX5A 4GNKB 3IVFA 2Z4DA 4HAXB 1T77A 4QJ5B 3ML4A 4A6FA 1MPHA 5KQ4A 4IAPA 5JP4A 3NSUA 2DA0A 2GUMA 4CHJA 4HAUB 4PQ0A 2LOZA 1EGXA 3FSSA 4WJ7A 1UEFA 2OTXA 1P5TA 1U5EA 2VKIA 3N7CA 1MAIA 2HTHB 2NZ8B 5C79A 1GG3A 3KRXA 3NWFA 1WGUA 3P7ZA 2FJLA 3OANA 3VOQA 2Z0QA 1X05A 1MIXA 3HQCA 3ODOA 1OY2A 2LULA 1UNPA 4K2PA 1X1GA 3ULCA 5D3YA 1MKEA 2LOXA 2K49A 5HE3A 2AEHA 1KZGA 1DROA 2YVCA 4DXAB 1BWNA 2KR0A 1XR0B 2YT1A 5LG4B 4HAYB 2NBVA 1RRPB 2GS0A 2RLOA 3CXBB 4QJ4B 4IFSA 2D9YA 5C5BB 1QQGA 3T06A 2DFKA 4MY6A 3F5RA 1J19A 2K2UA 3HSAA 1U5GA 2J0KA 3U7DA 5IRSA 1W1DA 2GJYA 3A8PA 5HE2A 2D4QA 1AQCA 2PZ1A 5LOPB 1PMSA 5JHGA 2YS1A 1UNQA 2OQBA 3SV1A 3CIKA 2DHJA 2L1CA 1ZC4B 4P7IA 1OQNA 2EJ8A 1UNRA 5I2SA 1NTYA 4HDOA 5KCVA 3FM8C 1U27A 2P0FA 2LYDA 2W2XC 2KCJA 2RNRB 2D10A 2DYNA 4HB2B 4A6HA 5HE0A 1LW3A 2BCJA 2ADZA 5C16A 4B6HA 1BTNA 4OT1A 4HATB 1XX0A 2J59M 1MK9B 1X1FA 2KIGA 2YT2A 2D11A 5C6RA 2ROZB 3NWAA 2GCLA 4BBKA 4EJNA 4D0NB 1W1HA 1FGZA 3QWMA 1FHWA 1QC6A 3DXEA 5DH9B 3ODWA 3QBVB 3A58A 4TYZA 1LB1A 2Z13A 2D9VA 3NWDA 2H7DA 1TXDA 3V5WA 2JP2A 2Z0OA 2MKRA 2K8EA 2DHKA 4F7GA 4IOYX 2X18A 2Q13A 2ROVA 1Z87A 1U5DA 1J0WA 2YS5A 3TCAA 1XD4A 3MDBC 1MK7B 3ODXA 1WGQA 4H8SA 3LJUX 2D2QA 3PVLA 3ZVRA 4KAXB 4GPTB 3KY9A 3M1IB 4KHBB 1ZYIA 4ZRKA 2H7EA 3P6AA 3U8ZA 4QJ3B 1V88A 2N0YA 2QKLA 2FJUB 1MI1A 2E2XA 1I7AA 4CYEA 2K2JA 2CAYA 2Y7BA 4PNKA 1Y19B 1KI1B 3OHMB 2CODA 2DKPA 1XKEA 4K17A 3TVVA 3KZ1A 3PZDA 2Y8GA 2RSGA 4DX90 2Z14A 4L6EA 3MPXA 1K5DB 1PLSA 2YF0A 3PVWA 4KHBA 2RRFA 2DKQA 2YRYA 4CSQA 4OSNA 2MFQA 3DCXA 1FGYA 1W1GA 4KHOA 3PVUA 2IFSA 1DBHA 4EKUA 2Y8FA 5M4YB 2R09A 2COCA 2M14A 4WSFA 4F7HA 3FVCA 1XODA 5J3TA 1TJ6A 3TW1A 1M7RA 3PEGA 4HDQA 2EC1A 4ZRIA 1N3HA 3HW2B 2UZRA 2YT0A 2W2WA 4DIXA 3UZTA 3QIJA 4NY0A 1DDMA 1WJMA 3F0WA 2KIEA 3O96A 1BAKA 3KRWA 2P8VA 1I2HA 2MDXA 3AU4A 3U12A 4DX8A 1V61A 2DYQA 2L2IA 4YONA 4GXBA 5KQ1A 1NTVA 1XCGA 5J3YA 4WVFB 5CLLB 4XWXA 3A8QA 2VSZA 2ELBA 4HAVB 1UPRA 2RVBB 2KUQA
chains in the Genus database with same CATH topology
4IFSA 2GCJA 3GYOA 2Z13A 3TO1A 3TVVA 3NWDA 2GUMA 2Z14A 4KHBB 1ZYIA 4L1RA 4QJ4B 5IRSA 4HSIA 4QJ3B 2Z59A 3FVCA 3U12A 4PQ0A 4KHBA 2K8EA 2RRFA 4IOYX 3HIEA 2K49A 3FSSA 3NW8A 4OT1A 5I2MA 4Z2MB 3TW1A 4CSQA 4OSNA 2FJUB 2KIGA 2YT2A 4GNKB 2Z4DA 3NWAA 2GCLA 2ZKMX 4KHOA 4DIXA 4QJ5B 2KR0A 4KHAA 4QXAB 4GOUA 3NWFA 4D6WA 2KIEA 4Z2NA 5I2SA 2NBVA 5LG4B 5M4YB 2R2YA 3OHMB 3A58A 2KUQA 3GYPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IRS A;  2KR0 A;  2Z59 A;  2Z4D A;  2NBV A;  2R2Y A; 
#chains in the Genus database with same CATH topology
 1U5F A;  1H10 A;  2D9Z A;  4DBB A;  2EMS A;  1WJ1 A;  3ZDT A;  2Z59 A;  1DDW A;  1FHO A;  5DHA B;  5I2M A;  2D9X A;  3TFM A;  3HK0 A;  1SHC A;  5GOW B;  1K5G B;  2EMT A;  3DXD A;  3RCP A;  1X86 A;  4D6W A;  2IYB A;  1KZ7 A;  4CHM A;  2CY4 A;  4HAW B;  3PG7 A;  5LON B;  3GYP A;  4EMO A;  1IRS A;  3AU5 A;  4ZRJ A;  5FI1 A;  1OMW A;  2HE7 A;  1Y5O A;  2J0M A;  1FB8 A;  2P0D A;  3HIE A;  2DN6 A;  5JHH A;  4GMV A;  2KGX B;  1V5M A;  4A5K A;  1DYN A;  3SUZ A;  2ZKM X;  3PP2 A;  4MT7 A;  1SGH A;  2M38 A;  4Z2N A;  2CRF A;  2RGN B;  2W2X D;  1U2B A;  1WI1 A;  2R2Y A;  1NU2 A;  3G9W A;  2YSZ A;  1P6S A;  3GYO A;  1MIZ B;  3AJ4 A;  2KUP A;  1FOE A;  4K2O A;  3X23 A;  2P0H A;  4HSI A;  1WVH A;  3VIA A;  3B77 A;  2YS3 A;  4KVG B;  2ELA A;  2N23 A;  4GMX B;  2DLW A;  4Z2M B;  2CY5 A;  3BJI A;  5L81 A;  3D8E A;  2D9W A;  1EF1 A;  3SO6 A;  1GC7 A;  1PFJ A;  2DX1 A;  4GZU A;  3SYX A;  2RUK B;  4QXA B;  3WA0 A;  1WG7 A;  2LG1 A;  3PSC A;  1ZVR A;  2UZS A;  2NMB A;  1B55 A;  5FI0 A;  3TO1 A;  3BIN A;  1M7E A;  5EFX A;  5DI9 B;  1ZC3 B;  2J0J A;  4NSW A;  1P3R A;  1ISN A;  4HHV A;  2DTC A;  2I5C A;  5DHF B;  5D3X A;  1NI2 A;  4TKN A;  1AWE A;  4GN1 A;  4HAZ B;  1FHX A;  2QKM A;  2GCJ A;  2MWN B;  5HE1 A;  3D8D A;  1ZSQ A;  1U29 A;  1EVH A;  1E5W A;  4MK0 A;  2DHI A;  3KSY A;  4YL8 A;  2AL6 A;  1X11 A;  2VRW B;  2XQN M;  4KHA A;  1H4R A;  5D3W A;  5JLJ B;  3ULB A;  1DDV A;  4HB3 B;  1ZM0 A;  2V76 A;  3WYF B;  5D27 A;  5C5B A;  2ZPY A;  4L1R A;  2LKO A;  4HB4 B;  2COF A;  3FEH A;  1TQZ A;  5D3V A;  3NW8 A;  2I5F A;  1EAZ A;  2G35 A;  1V5U A;  2K00 A;  1V89 A;  3D8F A;  4K81 A;  3A98 B;  4A6F B;  4C0A A;  4F7U P;  2COA A;  4A6K A;  1FAO A;  2R0D A;  5CLQ B;  4GOU A;  5DIF B;  2UVM A;  1BTK A;  3DXC A;  1RJ2 A;  2I1J A;  2Z0P A;  1UPQ A;  3SNH A;  1V5P A;  2I1K A;  4HB0 B;  5J3Q A;  4Y94 A;  1GC6 A;  1Q67 A;  2DX5 A;  4GNK B;  3IVF A;  2Z4D A;  4HAX B;  1T77 A;  4QJ5 B;  3ML4 A;  4A6F A;  1MPH A;  5KQ4 A;  4IAP A;  5JP4 A;  3NSU A;  2DA0 A;  2GUM A;  4CHJ A;  4HAU B;  4PQ0 A;  2LOZ A;  1EGX A;  3FSS A;  4WJ7 A;  1UEF A;  2OTX A;  1P5T A;  1U5E A;  2VKI A;  3N7C A;  1MAI A;  2HTH B;  2NZ8 B;  5C79 A;  1GG3 A;  3KRX A;  3NWF A;  1WGU A;  3P7Z A;  2FJL A;  3OAN A;  3VOQ A;  2Z0Q A;  1X05 A;  1MIX A;  3HQC A;  3ODO A;  1OY2 A;  2LUL A;  1UNP A;  4K2P A;  1X1G A;  3ULC A;  5D3Y A;  1MKE A;  2LOX A;  2K49 A;  5HE3 A;  2AEH A;  1KZG A;  1DRO A;  2YVC A;  4DXA B;  1BWN A;  2KR0 A;  1XR0 B;  2YT1 A;  5LG4 B;  4HAY B;  2NBV A;  1RRP B;  2GS0 A;  2RLO A;  3CXB B;  4QJ4 B;  4IFS A;  2D9Y A;  5C5B B;  1QQG A;  3T06 A;  2DFK A;  4MY6 A;  3F5R A;  1J19 A;  2K2U A;  3HSA A;  1U5G A;  2J0K A;  3U7D A;  5IRS A;  1W1D A;  2GJY A;  3A8P A;  5HE2 A;  2D4Q A;  1AQC A;  2PZ1 A;  5LOP B;  1PMS A;  5JHG A;  2YS1 A;  1UNQ A;  2OQB A;  3SV1 A;  3CIK A;  2DHJ A;  2L1C A;  1ZC4 B;  4P7I A;  1OQN A;  2EJ8 A;  1UNR A;  5I2S A;  1NTY A;  4HDO A;  5KCV A;  3FM8 C;  1U27 A;  2P0F A;  2LYD A;  2W2X C;  2KCJ A;  2RNR B;  2D10 A;  2DYN A;  4HB2 B;  4A6H A;  5HE0 A;  1LW3 A;  2BCJ A;  2ADZ A;  5C16 A;  4B6H A;  1BTN A;  4OT1 A;  4HAT B;  1XX0 A;  2J59 M;  1MK9 B;  1X1F A;  2KIG A;  2YT2 A;  2D11 A;  5C6R A;  2ROZ B;  3NWA A;  2GCL A;  4BBK A;  4EJN A;  4D0N B;  1W1H A;  1FGZ A;  3QWM A;  1FHW A;  1QC6 A;  3DXE A;  5DH9 B;  3ODW A;  3QBV B;  3A58 A;  4TYZ A;  1LB1 A;  2Z13 A;  2D9V A;  3NWD A;  2H7D A;  1TXD A;  3V5W A;  2JP2 A;  2Z0O A;  2MKR A;  2K8E A;  2DHK A;  4F7G A;  4IOY X;  2X18 A;  2Q13 A;  2ROV A;  1Z87 A;  1U5D A;  1J0W A;  2YS5 A;  3TCA A;  1XD4 A;  3MDB C;  1MK7 B;  3ODX A;  1WGQ A;  4H8S A;  3LJU X;  2D2Q A;  3PVL A;  3ZVR A;  4KAX B;  4GPT B;  3KY9 A;  3M1I B;  4KHB B;  1ZYI A;  4ZRK A;  2H7E A;  3P6A A;  3U8Z A;  4QJ3 B;  1V88 A;  2N0Y A;  2QKL A;  2FJU B;  1MI1 A;  2E2X A;  1I7A A;  4CYE A;  2K2J A;  2CAY A;  2Y7B A;  4PNK A;  1Y19 B;  1KI1 B;  3OHM B;  2COD A;  2DKP A;  1XKE A;  4K17 A;  3TVV A;  3KZ1 A;  3PZD A;  2Y8G A;  2RSG A;  4DX9 0;  2Z14 A;  4L6E A;  3MPX A;  1K5D B;  1PLS A;  2YF0 A;  3PVW A;  4KHB A;  2RRF A;  2DKQ A;  2YRY A;  4CSQ A;  4OSN A;  2MFQ A;  3DCX A;  1FGY A;  1W1G A;  4KHO A;  3PVU A;  2IFS A;  1DBH A;  4EKU A;  2Y8F A;  5M4Y B;  2R09 A;  2COC A;  2M14 A;  4WSF A;  4F7H A;  3FVC A;  1XOD A;  5J3T A;  1TJ6 A;  3TW1 A;  1M7R A;  3PEG A;  4HDQ A;  2EC1 A;  4ZRI A;  1N3H A;  3HW2 B;  2UZR A;  2YT0 A;  2W2W A;  4DIX A;  3UZT A;  3QIJ A;  4NY0 A;  1DDM A;  1WJM A;  3F0W A;  2KIE A;  3O96 A;  1BAK A;  3KRW A;  2P8V A;  1I2H A;  2MDX A;  3AU4 A;  3U12 A;  4DX8 A;  1V61 A;  2DYQ A;  2L2I A;  4YON A;  4GXB A;  5KQ1 A;  1NTV A;  1XCG A;  5J3Y A;  4WVF B;  5CLL B;  4XWX A;  3A8Q A;  2VSZ A;  2ELB A;  4HAV B;  1UPR A;  2RVB B;  2KUQ A; 
#chains in the Genus database with same CATH homology
 4IFS A;  2GCJ A;  3GYO A;  2Z13 A;  3TO1 A;  3TVV A;  3NWD A;  2GUM A;  2Z14 A;  4KHB B;  1ZYI A;  4L1R A;  4QJ4 B;  5IRS A;  4HSI A;  4QJ3 B;  2Z59 A;  3FVC A;  3U12 A;  4PQ0 A;  4KHB A;  2K8E A;  2RRF A;  4IOY X;  3HIE A;  2K49 A;  3FSS A;  3NW8 A;  4OT1 A;  5I2M A;  4Z2M B;  3TW1 A;  4CSQ A;  4OSN A;  2FJU B;  2KIG A;  2YT2 A;  4GNK B;  2Z4D A;  3NWA A;  2GCL A;  2ZKM X;  4KHO A;  4DIX A;  4QJ5 B;  2KR0 A;  4KHA A;  4QXA B;  4GOU A;  3NWF A;  4D6W A;  2KIE A;  4Z2N A;  5I2S A;  2NBV A;  5LG4 B;  5M4Y B;  2R2Y A;  3OHM B;  3A58 A;  2KUQ A;  3GYP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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