2R2YA

Crystal structure of the proteasomal rpn13 pru-domain
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
109
structure length
109
Chain Sequence
YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
source organism Mus musculus
publication title Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction.
pubmed doi rcsb
molecule keywords Protein ADRM1
total genus 27
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2007-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04683 Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.70 Mainly Beta Roll PH-domain like PH-domain like 2r2yA00
2Z4DA 2NBVA 2KR0A 5IRSA 2Z59A 2R2YA
chains in the Genus database with same CATH superfamily
2YRYA 4CHJA 2DKPA 3FEHA 3FM8C 2DLWA 1NTVA 5L81A 2GS0A 2K00A 4P7IA 2ZKMX 4K17A 2CRFA 1XR0B 2EMTA 1DDWA 2RSGA 3SUZA 3PP2A 1FOEA 4CYEA 4KVGB 5I2MA 5C6RA 5C16A 2RRFA 1P6SA 1EVHA 4IFSA 2LKOA 4QXAB 3U7DA 1U5GA 2YT1A 2DA0A 1B55A 1UNRA 5IRSA 4L6EA 2YS3A 2V76A 3KRXA 5D3XA 1GG3A 1X1GA 3X23A 3MPXA 1XODA 3RCPA 1PFJA 1K5DB 2YT0A 2DHKA 4XWXA 2W2XD 3PVLA 5JLJB 2L1CA 1TJ6A 3ODOA 3AU4A 4GOUA 1ZSQA 1W1HA 3U12A 5CLLB 4DIXA 1BTKA 4HAVB 4Z2NA 1LB1A 2Z0OA 4B6HA 1UNPA 1MKEA 2CODA 1GC7A 2ELBA 1Y5OA 2P0FA 3AU5A 2CY5A 1SHCA 3U8ZA 4F7GA 1QQGA 5JHHA 3T06A 2R2YA 2Z4DA 4HDOA 1EF1A 1FGYA 1MAIA 2JP2A 3NWAA 4H8SA 4IOYX 3HK0A 4WVFB 2MWNB 2YSZA 1J19A 5DH9B 4ZRJA 3BJIA 1DYNA 1FHOA 3GYPA 2GCLA 2GJYA 5J3QA 4GZUA 4D6WA 2MDXA 3A8PA 2P0HA 4ZRKA 5HE1A 2LOZA 3DXCA 1M7RA 3QWMA 2QKLA 4HATB 5DIFB 4HDQA 4HB2B 4GN1A 2DHIA 4GNKB 3OANA 3HIEA 2KUPA 5KCVA 1W1GA 1X1FA 3ZVRA 3SV1A 2UZSA 2HE7A 2FJLA 4PQ0A 3SYXA 2P0DA 1H4RA 3OHMB 4WSFA 2I1JA 1FGZA 1T77A 4HAUB 3V5WA 3VIAA 1Q67A 1X86A 2CAYA 4A5KA 5HE0A 1U5FA 3GYOA 1WI1A 1M7EA 4A6FA 4GXBA 2I5FA 2N23A 1MIXA 5D3WA 2H7DA 1ZVRA 1PLSA 3CIKA 5HE2A 2D11A 5I2SA 3QIJA 4HAXB 2Z59A 1XKEA 1BWNA 1MK9B 4QJ4B 4HB0B 1WG7A 1XD4A 4TYZA 1V61A 2K8EA 2DTCA 4HSIA 4ZRIA 1I7AA 2YS5A 2LULA 3PVUA 1V89A 4MK0A 5DHAB 1FHXA 1V88A 3KY9A 2H7EA 3DXEA 2E2XA 1WJMA 1OY2A 1FAOA 1U2BA 5DI9B 1EAZA 2DN6A 2YS1A 2Z14A 2KIEA 3FSSA 4KHBA 3O96A 3P7ZA 2HTHB 4OSNA 1MK7B 1SGHA 1E5WA 2ZPYA 1ZYIA 3BINA 1J0WA 1WGQA 5FI0A 4CHMA 5M4YB 3UZTA 4YONA 3CXBB 1X05A 2D9XA 2Y8GA 3ODXA 3TCAA 3ULBA 2KUQA 1UPRA 4IAPA 1V5MA 2K2JA 4WJ7A 5GOWB 1FHWA 2J0JA 4Y94A 3VOQA 3TVVA 3WYFB 4QJ3B 2N0YA 3A58A 1U5DA 4HAWB 5J3YA 3F5RA 3N7CA 1BTNA 2UVMA 1BAKA 3TO1A 2D9VA 1U5EA 4K2OA 2J0KA 1PMSA 3D8DA 2P8VA 5D3YA 1NTYA 3HSAA 3F0WA 3HQCA 2I5CA 2M38A 4DX8A 2NZ8B 2ROVA 5JHGA 2W2WA 1TQZA 4K81A 1WVHA 2DKQA 4MY6A 1U27A 5KQ4A 2DHJA 2DYQA 1KZGA 4A6FB 4DXAB 2Z0QA 1W1DA 5EFXA 2Y8FA 4K2PA 4NY0A 2KIGA 2R09A 1P3RA 2AEHA 2EMSA 1OMWA 3NWFA 4A6HA 1RRPB 5D27A 3TW1A 3PZDA 3KZ1A 2DX1A 2RNRB 4GMVA 2R0DA 4NSWA 2KGXB 1DDMA 1QC6A 2G35A 3SO6A 1FB8A 1MIZB 1P5TA 2K49A 2OQBA 3D8EA 1LW3A 2ELAA 1K5GB 2CY4A 2Z0PA 5LOPB 1UEFA 2RGNB 2VRWB 5CLQB 1DBHA 3A8QA 1I2HA 1U29A 2KCJA 5C79A 3KSYA 3FVCA 3PG7A 5KQ1A 2I1KA 1ZC3B 2X18A 2COFA 5DHFB 4DX90 2RUKB 2OTXA 3TFMA 2M14A 4KHBB 4Z2MB 5JP4A 1NI2A 1MPHA 2GCJA 3PVWA 3QBVB 1AQCA 3NW8A 1UPQA 2NBVA 3ML4A 4KHOA 5D3VA 4A6KA 2COAA 2LYDA 3DXDA 2ADZA 2GUMA 3G9WA 4KAXB 2J59M 3ZDTA 4DBBA 1UNQA 2YVCA 5J3TA 3PEGA 3NSUA 2MKRA 3ULCA 2PZ1A 1WJ1A 3AJ4A 1ZM0A 4QJ5B 2D9YA 4HHVA 4TKNA 2UZRA 4OT1A 5C5BB 4HB3B 2RVBB 2EJ8A 2NMBA 1X11A 2QKMA 3B77A 4F7HA 1H10A 2IYBA 2COCA 4EMOA 5C5BA 1ZC4B 4L1RA 5LONB 2D9ZA 1NU2A 2VSZA 2MFQA 3MDBC 3NWDA 4YL8A 1XCGA 4PNKA 4EKUA 1XX0A 2D2QA 3D8FA 1MI1A 1N3HA 1OQNA 4GMXB 4CSQA 3A98B 2KR0A 1IRSA 4HAZB 2YF0A 2L2IA 2AL6A 1TXDA 2Q13A 2J0MA 2ROZB 3IVFA 3PSCA 2Y7BA 1ISNA 2D10A 3DCXA 1V5UA 2D4QA 3P6AA 4BBKA 1Z87A 2DYNA 2Z13A 2K2UA 4MT7A 4F7UP 3SNHA 1RJ2A 4KHAA 4EJNA 3M1IB 3ODWA 2LOXA 2W2XC 4C0AA 1DROA 2DX5A 3LJUX 4HAYB 5HE3A 2EC1A 1EGXA 2D9WA 5FI1A 5LG4B 2XQNM 1WGUA 3HW2B 3WA0A 2IFSA 2VKIA 2RLOA 2DFKA 2FJUB 1KZ7A 4HB4B 4D0NB 1AWEA 1V5PA 3KRWA 1GC6A 1KI1B 2LG1A 1Y19B 2BCJA 1DDVA 4GPTB 2YT2A
chains in the Genus database with same CATH topology
4OT1A 4KHOA 4QXAB 3TVVA 2GUMA 2Z4DA 4OSNA 4CSQA 4QJ3B 2KR0A 4DIXA 3A58A 5IRSA 4Z2NA 4GNKB 5I2SA 1ZYIA 3HIEA 2R2YA 4KHBB 5LG4B 3NWAA 4IOYX 5M4YB 4Z2MB 2K49A 2ZKMX 2Z59A 4PQ0A 3TO1A 2GCJA 3OHMB 2FJUB 4L1RA 4QJ4B 2KUQA 4QJ5B 2KIGA 3NW8A 3NWDA 5I2MA 3U12A 2Z13A 2NBVA 2Z14A 2RRFA 2KIEA 3GYOA 3FSSA 2K8EA 2GCLA 3GYPA 3NWFA 4GOUA 4KHBA 4KHAA 3FVCA 4HSIA 2YT2A 4IFSA 3TW1A 4D6WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z4D A;  2NBV A;  2KR0 A;  5IRS A;  2Z59 A;  2R2Y A; 
#chains in the Genus database with same CATH topology
 2YRY A;  4CHJ A;  2DKP A;  3FEH A;  3FM8 C;  2DLW A;  1NTV A;  5L81 A;  2GS0 A;  2K00 A;  4P7I A;  2ZKM X;  4K17 A;  2CRF A;  1XR0 B;  2EMT A;  1DDW A;  2RSG A;  3SUZ A;  3PP2 A;  1FOE A;  4CYE A;  4KVG B;  5I2M A;  5C6R A;  5C16 A;  2RRF A;  1P6S A;  1EVH A;  4IFS A;  2LKO A;  4QXA B;  3U7D A;  1U5G A;  2YT1 A;  2DA0 A;  1B55 A;  1UNR A;  5IRS A;  4L6E A;  2YS3 A;  2V76 A;  3KRX A;  5D3X A;  1GG3 A;  1X1G A;  3X23 A;  3MPX A;  1XOD A;  3RCP A;  1PFJ A;  1K5D B;  2YT0 A;  2DHK A;  4XWX A;  2W2X D;  3PVL A;  5JLJ B;  2L1C A;  1TJ6 A;  3ODO A;  3AU4 A;  4GOU A;  1ZSQ A;  1W1H A;  3U12 A;  5CLL B;  4DIX A;  1BTK A;  4HAV B;  4Z2N A;  1LB1 A;  2Z0O A;  4B6H A;  1UNP A;  1MKE A;  2COD A;  1GC7 A;  2ELB A;  1Y5O A;  2P0F A;  3AU5 A;  2CY5 A;  1SHC A;  3U8Z A;  4F7G A;  1QQG A;  5JHH A;  3T06 A;  2R2Y A;  2Z4D A;  4HDO A;  1EF1 A;  1FGY A;  1MAI A;  2JP2 A;  3NWA A;  4H8S A;  4IOY X;  3HK0 A;  4WVF B;  2MWN B;  2YSZ A;  1J19 A;  5DH9 B;  4ZRJ A;  3BJI A;  1DYN A;  1FHO A;  3GYP A;  2GCL A;  2GJY A;  5J3Q A;  4GZU A;  4D6W A;  2MDX A;  3A8P A;  2P0H A;  4ZRK A;  5HE1 A;  2LOZ A;  3DXC A;  1M7R A;  3QWM A;  2QKL A;  4HAT B;  5DIF B;  4HDQ A;  4HB2 B;  4GN1 A;  2DHI A;  4GNK B;  3OAN A;  3HIE A;  2KUP A;  5KCV A;  1W1G A;  1X1F A;  3ZVR A;  3SV1 A;  2UZS A;  2HE7 A;  2FJL A;  4PQ0 A;  3SYX A;  2P0D A;  1H4R A;  3OHM B;  4WSF A;  2I1J A;  1FGZ A;  1T77 A;  4HAU B;  3V5W A;  3VIA A;  1Q67 A;  1X86 A;  2CAY A;  4A5K A;  5HE0 A;  1U5F A;  3GYO A;  1WI1 A;  1M7E A;  4A6F A;  4GXB A;  2I5F A;  2N23 A;  1MIX A;  5D3W A;  2H7D A;  1ZVR A;  1PLS A;  3CIK A;  5HE2 A;  2D11 A;  5I2S A;  3QIJ A;  4HAX B;  2Z59 A;  1XKE A;  1BWN A;  1MK9 B;  4QJ4 B;  4HB0 B;  1WG7 A;  1XD4 A;  4TYZ A;  1V61 A;  2K8E A;  2DTC A;  4HSI A;  4ZRI A;  1I7A A;  2YS5 A;  2LUL A;  3PVU A;  1V89 A;  4MK0 A;  5DHA B;  1FHX A;  1V88 A;  3KY9 A;  2H7E A;  3DXE A;  2E2X A;  1WJM A;  1OY2 A;  1FAO A;  1U2B A;  5DI9 B;  1EAZ A;  2DN6 A;  2YS1 A;  2Z14 A;  2KIE A;  3FSS A;  4KHB A;  3O96 A;  3P7Z A;  2HTH B;  4OSN A;  1MK7 B;  1SGH A;  1E5W A;  2ZPY A;  1ZYI A;  3BIN A;  1J0W A;  1WGQ A;  5FI0 A;  4CHM A;  5M4Y B;  3UZT A;  4YON A;  3CXB B;  1X05 A;  2D9X A;  2Y8G A;  3ODX A;  3TCA A;  3ULB A;  2KUQ A;  1UPR A;  4IAP A;  1V5M A;  2K2J A;  4WJ7 A;  5GOW B;  1FHW A;  2J0J A;  4Y94 A;  3VOQ A;  3TVV A;  3WYF B;  4QJ3 B;  2N0Y A;  3A58 A;  1U5D A;  4HAW B;  5J3Y A;  3F5R A;  3N7C A;  1BTN A;  2UVM A;  1BAK A;  3TO1 A;  2D9V A;  1U5E A;  4K2O A;  2J0K A;  1PMS A;  3D8D A;  2P8V A;  5D3Y A;  1NTY A;  3HSA A;  3F0W A;  3HQC A;  2I5C A;  2M38 A;  4DX8 A;  2NZ8 B;  2ROV A;  5JHG A;  2W2W A;  1TQZ A;  4K81 A;  1WVH A;  2DKQ A;  4MY6 A;  1U27 A;  5KQ4 A;  2DHJ A;  2DYQ A;  1KZG A;  4A6F B;  4DXA B;  2Z0Q A;  1W1D A;  5EFX A;  2Y8F A;  4K2P A;  4NY0 A;  2KIG A;  2R09 A;  1P3R A;  2AEH A;  2EMS A;  1OMW A;  3NWF A;  4A6H A;  1RRP B;  5D27 A;  3TW1 A;  3PZD A;  3KZ1 A;  2DX1 A;  2RNR B;  4GMV A;  2R0D A;  4NSW A;  2KGX B;  1DDM A;  1QC6 A;  2G35 A;  3SO6 A;  1FB8 A;  1MIZ B;  1P5T A;  2K49 A;  2OQB A;  3D8E A;  1LW3 A;  2ELA A;  1K5G B;  2CY4 A;  2Z0P A;  5LOP B;  1UEF A;  2RGN B;  2VRW B;  5CLQ B;  1DBH A;  3A8Q A;  1I2H A;  1U29 A;  2KCJ A;  5C79 A;  3KSY A;  3FVC A;  3PG7 A;  5KQ1 A;  2I1K A;  1ZC3 B;  2X18 A;  2COF A;  5DHF B;  4DX9 0;  2RUK B;  2OTX A;  3TFM A;  2M14 A;  4KHB B;  4Z2M B;  5JP4 A;  1NI2 A;  1MPH A;  2GCJ A;  3PVW A;  3QBV B;  1AQC A;  3NW8 A;  1UPQ A;  2NBV A;  3ML4 A;  4KHO A;  5D3V A;  4A6K A;  2COA A;  2LYD A;  3DXD A;  2ADZ A;  2GUM A;  3G9W A;  4KAX B;  2J59 M;  3ZDT A;  4DBB A;  1UNQ A;  2YVC A;  5J3T A;  3PEG A;  3NSU A;  2MKR A;  3ULC A;  2PZ1 A;  1WJ1 A;  3AJ4 A;  1ZM0 A;  4QJ5 B;  2D9Y A;  4HHV A;  4TKN A;  2UZR A;  4OT1 A;  5C5B B;  4HB3 B;  2RVB B;  2EJ8 A;  2NMB A;  1X11 A;  2QKM A;  3B77 A;  4F7H A;  1H10 A;  2IYB A;  2COC A;  4EMO A;  5C5B A;  1ZC4 B;  4L1R A;  5LON B;  2D9Z A;  1NU2 A;  2VSZ A;  2MFQ A;  3MDB C;  3NWD A;  4YL8 A;  1XCG A;  4PNK A;  4EKU A;  1XX0 A;  2D2Q A;  3D8F A;  1MI1 A;  1N3H A;  1OQN A;  4GMX B;  4CSQ A;  3A98 B;  2KR0 A;  1IRS A;  4HAZ B;  2YF0 A;  2L2I A;  2AL6 A;  1TXD A;  2Q13 A;  2J0M A;  2ROZ B;  3IVF A;  3PSC A;  2Y7B A;  1ISN A;  2D10 A;  3DCX A;  1V5U A;  2D4Q A;  3P6A A;  4BBK A;  1Z87 A;  2DYN A;  2Z13 A;  2K2U A;  4MT7 A;  4F7U P;  3SNH A;  1RJ2 A;  4KHA A;  4EJN A;  3M1I B;  3ODW A;  2LOX A;  2W2X C;  4C0A A;  1DRO A;  2DX5 A;  3LJU X;  4HAY B;  5HE3 A;  2EC1 A;  1EGX A;  2D9W A;  5FI1 A;  5LG4 B;  2XQN M;  1WGU A;  3HW2 B;  3WA0 A;  2IFS A;  2VKI A;  2RLO A;  2DFK A;  2FJU B;  1KZ7 A;  4HB4 B;  4D0N B;  1AWE A;  1V5P A;  3KRW A;  1GC6 A;  1KI1 B;  2LG1 A;  1Y19 B;  2BCJ A;  1DDV A;  4GPT B;  2YT2 A; 
#chains in the Genus database with same CATH homology
 4OT1 A;  4KHO A;  4QXA B;  3TVV A;  2GUM A;  2Z4D A;  4OSN A;  4CSQ A;  4QJ3 B;  2KR0 A;  4DIX A;  3A58 A;  5IRS A;  4Z2N A;  4GNK B;  5I2S A;  1ZYI A;  3HIE A;  2R2Y A;  4KHB B;  5LG4 B;  3NWA A;  4IOY X;  5M4Y B;  4Z2M B;  2K49 A;  2ZKM X;  2Z59 A;  4PQ0 A;  3TO1 A;  2GCJ A;  3OHM B;  2FJU B;  4L1R A;  4QJ4 B;  2KUQ A;  4QJ5 B;  2KIG A;  3NW8 A;  3NWD A;  5I2M A;  3U12 A;  2Z13 A;  2NBV A;  2Z14 A;  2RRF A;  2KIE A;  3GYO A;  3FSS A;  2K8E A;  2GCL A;  3GYP A;  3NWF A;  4GOU A;  4KHB A;  4KHA A;  3FVC A;  4HSI A;  2YT2 A;  4IFS A;  3TW1 A;  4D6W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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