2R2YA

Crystal structure of the proteasomal rpn13 pru-domain
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
109
structure length
109
Chain Sequence
YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Protein ADRM1
publication title Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction.
pubmed doi rcsb
source organism Mus musculus
total genus 27
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2007-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04683 Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.70 Mainly Beta Roll PH-domain like PH-domain like 2r2yA00
2Z59A 2NBVA 2KR0A 5IRSA 2R2YA 2Z4DA
chains in the Genus database with same CATH superfamily
5DIFB 1UEFA 5D3YA 4YL8A 2E2XA 5J3TA 2DX1A 4HATB 1EAZA 2DFKA 3PSCA 3ODXA 3ML4A 1I2HA 3HW2B 4MY6A 1NTYA 4NY0A 2DLWA 1EGXA 2YVCA 3F0WA 4ZRIA 2P0DA 5D3VA 1MAIA 1Y5OA 3HK0A 1X11A 3O96A 2N0YA 2RSGA 4QJ3B 3TO1A 1OMWA 1ISNA 1XODA 5JHHA 1GG3A 4GPTB 4WVFB 5C16A 3KRXA 4PQ0A 2CY5A 3GYPA 2R09A 1BAKA 4D6WA 4HB2B 1K5GB 4HAWB 5DHAB 1WG7A 1RJ2A 2K8EA 4HAZB 1ZC3B 5L81A 5J3QA 2IFSA 2MFQA 1SGHA 3TVVA 1U29A 4GNKB 1M7RA 2D9YA 2I5CA 2RVBB 4WSFA 2K2UA 4IFSA 4B6HA 4F7UP 1M7EA 2GUMA 4A6HA 1FGYA 4OSNA 2N23A 3DCXA 2AL6A 3QWMA 1V61A 2LYDA 2D9XA 1XCGA 4D0NB 1DDWA 1KI1B 5CLQB 1MI1A 4OT1A 2QKLA 1X1GA 3CXBB 1MIXA 2D2QA 2HE7A 3NSUA 2P0FA 3ULBA 4HAYB 4CSQA 5D3WA 3SYXA 3TFMA 2ROZB 2YT0A 3AU4A 3ULCA 3N7CA 2K00A 1V88A 2KIGA 2W2XD 2RLOA 3WYFB 1X05A 3VOQA 1E5WA 3A58A 2Z4DA 4DX90 4ZRJA 3RCPA 2BCJA 2Y8FA 2I5FA 2YF0A 1DROA 4DBBA 2ZKMX 1WJ1A 2ELAA 1BTKA 1RRPB 2MWNB 2K49A 1ZYIA 1U5DA 1MK7B 3BINA 3NWAA 3U8ZA 3MPXA 5HE1A 2Z14A 1U27A 2W2WA 3PVWA 3DXCA 1OQNA 5D3XA 1U5FA 4KHAA 2DN6A 2IYBA 2I1JA 2Y7BA 1MIZB 2D9WA 4F7HA 1OY2A 3HQCA 5FI0A 3X23A 1N3HA 2COFA 4DXAB 2V76A 2NZ8B 1SHCA 1QQGA 4HAVB 4KAXB 1DYNA 3FM8C 1NI2A 3NWFA 2YT2A 3U12A 2G35A 1FB8A 4DX8A 2DYQA 2DKPA 4HDOA 5IRSA 2EMTA 4NSWA 1GC7A 2L2IA 2H7EA 3T06A 2DX5A 4HB4B 3ZVRA 3A8QA 2CODA 2CRFA 5C79A 2P0HA 2D11A 3V5WA 4IAPA 1AQCA 4IOYX 4K2OA 4P7IA 1H4RA 2H7DA 2EJ8A 1P6SA 1QC6A 4HAUB 2DKQA 3FVCA 1FGZA 1WGQA 2KUQA 5I2SA 2OQBA 4KHBB 3ZDTA 2COCA 1WVHA 4CYEA 3HIEA 2LULA 3DXEA 4QJ4B 2K2JA 3PVUA 1TJ6A 4HAXB 1BTNA 3TW1A 2KCJA 2XQNM 2KGXB 1ZVRA 1PFJA 3AJ4A 1NTVA 3PZDA 4K2PA 4HHVA 4DIXA 4Z2NA 3A8PA 1B55A 3TCAA 2AEHA 5KQ1A 3U7DA 1J0WA 2FJUB 1EVHA 2DHJA 2GCJA 2VRWB 4TYZA 3PP2A 3UZTA 4CHMA 3SNHA 4GMXB 4L6EA 4GOUA 1MPHA 5LG4B 5LONB 4F7GA 1I7AA 3KSYA 1T77A 1H10A 2EC1A 3FSSA 3IVFA 1V89A 4L1RA 4A6KA 2DYNA 2COAA 1XX0A 2LOXA 2Z0OA 1Y19B 3OANA 1FAOA 5LOPB 4YONA 3ODOA 1FHWA 3PEGA 3CIKA 2YS5A 1V5PA 2X18A 4A6FB 2VSZA 5HE2A 1FHOA 1P3RA 2MDXA 1WGUA 2LOZA 3D8EA 2EMSA 1WJMA 3QIJA 2KIEA 2Q13A 4GXBA 1XR0B 2J0KA 5EFXA 4QJ5B 5C5BB 3P7ZA 2ELBA 1UPRA 2OTXA 4KHOA 2YS1A 3BJIA 1X86A 2YS3A 3B77A 4TKNA 2D10A 3ODWA 1GC6A 3HSAA 1BWNA 1P5TA 5DHFB 1UNRA 2ROVA 2DA0A 2GCLA 1W1DA 4K81A 1LB1A 4KVGB 3NWDA 3SV1A 3KY9A 4HDQA 2PZ1A 4GZUA 5FI1A 1V5MA 1V5UA 2HTHB 2J0MA 1MK9B 3MDBC 5KCVA 4QXAB 2UZSA 1DDVA 4MT7A 3KZ1A 1FOEA 2KUPA 2L1CA 2NMBA 1KZ7A 1LW3A 5KQ4A 3SO6A 4GN1A 2Y8GA 4Z2MB 3D8FA 4GMVA 3G9WA 2Z0QA 1UNQA 1U5GA 2YSZA 5HE3A 2W2XC 1XD4A 4EMOA 1FHXA 5DH9B 4H8SA 1PLSA 1AWEA 2D4QA 1TXDA 2I1KA 2Z13A 4KHBA 3WA0A 2R2YA 2RGNB 5M4YB 1K5DB 1U2BA 5DI9B 4HB3B 1ZC4B 1KZGA 1W1GA 1Q67A 3QBVB 2LKOA 3M1IB 4EKUA 3FEHA 3GYOA 4WJ7A 1X1FA 3DXDA 2QKMA 2RNRB 5J3YA 2RUKB 1J19A 2D9VA 4CHJA 1ZM0A 1TQZA 2Z59A 2NBVA 3D8DA 4HB0B 2ZPYA 3SUZA 2UVMA 1MKEA 4BBKA 5CLLB 3PG7A 3PVLA 4EJNA 3NW8A 2J59M 5JLJB 2CY4A 1DBHA 2P8VA 5JHGA 1UNPA 5I2MA 5GOWB 4MK0A 4C0AA 4K17A 2M38A 3A98B 1U5EA 2ADZA 2CAYA 4A6FA 2DTCA 5JP4A 2LG1A 2DHKA 1W1HA 1XKEA 1ZSQA 3P6AA 1EF1A 1UPQA 1IRSA 2R0DA 2J0JA 3LJUX 1Z87A 3OHMB 2VKIA 2GJYA 2JP2A 2RRFA 4A5KA 2YRYA 3KRWA 1DDMA 5C5BA 3VIAA 2D9ZA 1NU2A 1PMSA 5HE0A 4HSIA 5C6RA 3AU5A 2KR0A 5D27A 2M14A 2UZRA 4XWXA 1WI1A 2MKRA 4Y94A 2GS0A 4ZRKA 3F5RA 2DHIA 2Z0PA 2FJLA 4PNKA 2YT1A
chains in the Genus database with same CATH topology
2K8EA 3OHMB 3A58A 4OT1A 2Z4DA 5IRSA 2Z13A 3FVCA 4KHBA 2KIEA 4KHAA 4DIXA 2KUQA 5I2MA 3TVVA 4Z2NA 2RRFA 4KHBB 5I2SA 4GNKB 4QJ3B 4QXAB 3TO1A 3NW8A 2ZKMX 2R2YA 3FSSA 5M4YB 4L1RA 4QJ5B 4IFSA 2FJUB 4CSQA 4HSIA 2Z59A 2GCJA 2K49A 3HIEA 2NBVA 4KHOA 2GUMA 2KR0A 4PQ0A 1ZYIA 4QJ4B 3GYPA 4Z2MB 4OSNA 4D6WA 3NWAA 3NWFA 2KIGA 3TW1A 4GOUA 5LG4B 2YT2A 4IOYX 3U12A 2GCLA 3GYOA 2Z14A 3NWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z59 A;  2NBV A;  2KR0 A;  5IRS A;  2R2Y A;  2Z4D A; 
#chains in the Genus database with same CATH topology
 5DIF B;  1UEF A;  5D3Y A;  4YL8 A;  2E2X A;  5J3T A;  2DX1 A;  4HAT B;  1EAZ A;  2DFK A;  3PSC A;  3ODX A;  3ML4 A;  1I2H A;  3HW2 B;  4MY6 A;  1NTY A;  4NY0 A;  2DLW A;  1EGX A;  2YVC A;  3F0W A;  4ZRI A;  2P0D A;  5D3V A;  1MAI A;  1Y5O A;  3HK0 A;  1X11 A;  3O96 A;  2N0Y A;  2RSG A;  4QJ3 B;  3TO1 A;  1OMW A;  1ISN A;  1XOD A;  5JHH A;  1GG3 A;  4GPT B;  4WVF B;  5C16 A;  3KRX A;  4PQ0 A;  2CY5 A;  3GYP A;  2R09 A;  1BAK A;  4D6W A;  4HB2 B;  1K5G B;  4HAW B;  5DHA B;  1WG7 A;  1RJ2 A;  2K8E A;  4HAZ B;  1ZC3 B;  5L81 A;  5J3Q A;  2IFS A;  2MFQ A;  1SGH A;  3TVV A;  1U29 A;  4GNK B;  1M7R A;  2D9Y A;  2I5C A;  2RVB B;  4WSF A;  2K2U A;  4IFS A;  4B6H A;  4F7U P;  1M7E A;  2GUM A;  4A6H A;  1FGY A;  4OSN A;  2N23 A;  3DCX A;  2AL6 A;  3QWM A;  1V61 A;  2LYD A;  2D9X A;  1XCG A;  4D0N B;  1DDW A;  1KI1 B;  5CLQ B;  1MI1 A;  4OT1 A;  2QKL A;  1X1G A;  3CXB B;  1MIX A;  2D2Q A;  2HE7 A;  3NSU A;  2P0F A;  3ULB A;  4HAY B;  4CSQ A;  5D3W A;  3SYX A;  3TFM A;  2ROZ B;  2YT0 A;  3AU4 A;  3ULC A;  3N7C A;  2K00 A;  1V88 A;  2KIG A;  2W2X D;  2RLO A;  3WYF B;  1X05 A;  3VOQ A;  1E5W A;  3A58 A;  2Z4D A;  4DX9 0;  4ZRJ A;  3RCP A;  2BCJ A;  2Y8F A;  2I5F A;  2YF0 A;  1DRO A;  4DBB A;  2ZKM X;  1WJ1 A;  2ELA A;  1BTK A;  1RRP B;  2MWN B;  2K49 A;  1ZYI A;  1U5D A;  1MK7 B;  3BIN A;  3NWA A;  3U8Z A;  3MPX A;  5HE1 A;  2Z14 A;  1U27 A;  2W2W A;  3PVW A;  3DXC A;  1OQN A;  5D3X A;  1U5F A;  4KHA A;  2DN6 A;  2IYB A;  2I1J A;  2Y7B A;  1MIZ B;  2D9W A;  4F7H A;  1OY2 A;  3HQC A;  5FI0 A;  3X23 A;  1N3H A;  2COF A;  4DXA B;  2V76 A;  2NZ8 B;  1SHC A;  1QQG A;  4HAV B;  4KAX B;  1DYN A;  3FM8 C;  1NI2 A;  3NWF A;  2YT2 A;  3U12 A;  2G35 A;  1FB8 A;  4DX8 A;  2DYQ A;  2DKP A;  4HDO A;  5IRS A;  2EMT A;  4NSW A;  1GC7 A;  2L2I A;  2H7E A;  3T06 A;  2DX5 A;  4HB4 B;  3ZVR A;  3A8Q A;  2COD A;  2CRF A;  5C79 A;  2P0H A;  2D11 A;  3V5W A;  4IAP A;  1AQC A;  4IOY X;  4K2O A;  4P7I A;  1H4R A;  2H7D A;  2EJ8 A;  1P6S A;  1QC6 A;  4HAU B;  2DKQ A;  3FVC A;  1FGZ A;  1WGQ A;  2KUQ A;  5I2S A;  2OQB A;  4KHB B;  3ZDT A;  2COC A;  1WVH A;  4CYE A;  3HIE A;  2LUL A;  3DXE A;  4QJ4 B;  2K2J A;  3PVU A;  1TJ6 A;  4HAX B;  1BTN A;  3TW1 A;  2KCJ A;  2XQN M;  2KGX B;  1ZVR A;  1PFJ A;  3AJ4 A;  1NTV A;  3PZD A;  4K2P A;  4HHV A;  4DIX A;  4Z2N A;  3A8P A;  1B55 A;  3TCA A;  2AEH A;  5KQ1 A;  3U7D A;  1J0W A;  2FJU B;  1EVH A;  2DHJ A;  2GCJ A;  2VRW B;  4TYZ A;  3PP2 A;  3UZT A;  4CHM A;  3SNH A;  4GMX B;  4L6E A;  4GOU A;  1MPH A;  5LG4 B;  5LON B;  4F7G A;  1I7A A;  3KSY A;  1T77 A;  1H10 A;  2EC1 A;  3FSS A;  3IVF A;  1V89 A;  4L1R A;  4A6K A;  2DYN A;  2COA A;  1XX0 A;  2LOX A;  2Z0O A;  1Y19 B;  3OAN A;  1FAO A;  5LOP B;  4YON A;  3ODO A;  1FHW A;  3PEG A;  3CIK A;  2YS5 A;  1V5P A;  2X18 A;  4A6F B;  2VSZ A;  5HE2 A;  1FHO A;  1P3R A;  2MDX A;  1WGU A;  2LOZ A;  3D8E A;  2EMS A;  1WJM A;  3QIJ A;  2KIE A;  2Q13 A;  4GXB A;  1XR0 B;  2J0K A;  5EFX A;  4QJ5 B;  5C5B B;  3P7Z A;  2ELB A;  1UPR A;  2OTX A;  4KHO A;  2YS1 A;  3BJI A;  1X86 A;  2YS3 A;  3B77 A;  4TKN A;  2D10 A;  3ODW A;  1GC6 A;  3HSA A;  1BWN A;  1P5T A;  5DHF B;  1UNR A;  2ROV A;  2DA0 A;  2GCL A;  1W1D A;  4K81 A;  1LB1 A;  4KVG B;  3NWD A;  3SV1 A;  3KY9 A;  4HDQ A;  2PZ1 A;  4GZU A;  5FI1 A;  1V5M A;  1V5U A;  2HTH B;  2J0M A;  1MK9 B;  3MDB C;  5KCV A;  4QXA B;  2UZS A;  1DDV A;  4MT7 A;  3KZ1 A;  1FOE A;  2KUP A;  2L1C A;  2NMB A;  1KZ7 A;  1LW3 A;  5KQ4 A;  3SO6 A;  4GN1 A;  2Y8G A;  4Z2M B;  3D8F A;  4GMV A;  3G9W A;  2Z0Q A;  1UNQ A;  1U5G A;  2YSZ A;  5HE3 A;  2W2X C;  1XD4 A;  4EMO A;  1FHX A;  5DH9 B;  4H8S A;  1PLS A;  1AWE A;  2D4Q A;  1TXD A;  2I1K A;  2Z13 A;  4KHB A;  3WA0 A;  2R2Y A;  2RGN B;  5M4Y B;  1K5D B;  1U2B A;  5DI9 B;  4HB3 B;  1ZC4 B;  1KZG A;  1W1G A;  1Q67 A;  3QBV B;  2LKO A;  3M1I B;  4EKU A;  3FEH A;  3GYO A;  4WJ7 A;  1X1F A;  3DXD A;  2QKM A;  2RNR B;  5J3Y A;  2RUK B;  1J19 A;  2D9V A;  4CHJ A;  1ZM0 A;  1TQZ A;  2Z59 A;  2NBV A;  3D8D A;  4HB0 B;  2ZPY A;  3SUZ A;  2UVM A;  1MKE A;  4BBK A;  5CLL B;  3PG7 A;  3PVL A;  4EJN A;  3NW8 A;  2J59 M;  5JLJ B;  2CY4 A;  1DBH A;  2P8V A;  5JHG A;  1UNP A;  5I2M A;  5GOW B;  4MK0 A;  4C0A A;  4K17 A;  2M38 A;  3A98 B;  1U5E A;  2ADZ A;  2CAY A;  4A6F A;  2DTC A;  5JP4 A;  2LG1 A;  2DHK A;  1W1H A;  1XKE A;  1ZSQ A;  3P6A A;  1EF1 A;  1UPQ A;  1IRS A;  2R0D A;  2J0J A;  3LJU X;  1Z87 A;  3OHM B;  2VKI A;  2GJY A;  2JP2 A;  2RRF A;  4A5K A;  2YRY A;  3KRW A;  1DDM A;  5C5B A;  3VIA A;  2D9Z A;  1NU2 A;  1PMS A;  5HE0 A;  4HSI A;  5C6R A;  3AU5 A;  2KR0 A;  5D27 A;  2M14 A;  2UZR A;  4XWX A;  1WI1 A;  2MKR A;  4Y94 A;  2GS0 A;  4ZRK A;  3F5R A;  2DHI A;  2Z0P A;  2FJL A;  4PNK A;  2YT1 A; 
#chains in the Genus database with same CATH homology
 2K8E A;  3OHM B;  3A58 A;  4OT1 A;  2Z4D A;  5IRS A;  2Z13 A;  3FVC A;  4KHB A;  2KIE A;  4KHA A;  4DIX A;  2KUQ A;  5I2M A;  3TVV A;  4Z2N A;  2RRF A;  4KHB B;  5I2S A;  4GNK B;  4QJ3 B;  4QXA B;  3TO1 A;  3NW8 A;  2ZKM X;  2R2Y A;  3FSS A;  5M4Y B;  4L1R A;  4QJ5 B;  4IFS A;  2FJU B;  4CSQ A;  4HSI A;  2Z59 A;  2GCJ A;  2K49 A;  3HIE A;  2NBV A;  4KHO A;  2GUM A;  2KR0 A;  4PQ0 A;  1ZYI A;  4QJ4 B;  3GYP A;  4Z2M B;  4OSN A;  4D6W A;  3NWA A;  3NWF A;  2KIG A;  3TW1 A;  4GOU A;  5LG4 B;  2YT2 A;  4IOY X;  3U12 A;  2GCL A;  3GYO A;  2Z14 A;  3NWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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