4KHBA

Structure of the spt16d pob3n heterodimer
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
116
structure length
113
Chain Sequence
KRFESYKRDNQLPPKVRDMGIVIDQKNNTIVLPIMGRPVPFHINTIKNASKSDEGEWSFLRINFLSPGQRKDDQPFEDASAHFVRSLTFRSTDGDRYAEIANQISNLKREAVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis of histone H2A-H2B recognition by the essential chaperone FACT.
pubmed doi rcsb
source organism Chaetomium thermophilum var. thermophilum
molecule tags Transcription/replication
molecule keywords Uncharacterized protein SPT16D
total genus 21
structure length 113
sequence length 116
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2013-04-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.210 Mainly Beta Roll PH-domain like PH-domain like 4khbA00
4KHBA
chains in the Genus database with same CATH superfamily
5HE1A 2KUQA 1M7EA 4H8SA 3ODOA 3O96A 3IVFA 5C79A 2LOXA 4DX8A 3SNHA 2DFKA 3KRWA 1QC6A 2K00A 3UZTA 2DX5A 2ROZB 4IOYX 1UPQA 1MKEA 2YS3A 3A58A 3PSCA 2J0JA 3WA0A 3A8PA 2J0KA 2LYDA 1GC6A 1K5DB 3T06A 1MIXA 1M7RA 1AWEA 1I7AA 2CY4A 5CLLB 1V89A 1KI1B 1X86A 2OQBA 4MY6A 2RUKB 1MAIA 2EC1A 4HB2B 5LOPB 3FEHA 3HW2B 3U12A 5HE0A 2LG1A 5D3XA 1X05A 3N7CA 4ZRKA 1TJ6A 2YF0A 1EGXA 5KCVA 4TYZA 1ZSQA 1UNRA 3A98B 2DKPA 2Z0PA 4HB4B 3NSUA 5JHGA 4PQ0A 1OQNA 2H7EA 1PLSA 2MKRA 1RJ2A 5DI9B 1P6SA 1V5MA 2XQNM 2ELBA 3AU4A 2KUPA 2RGNB 4ZRIA 3TVVA 5JLJB 3HQCA 2KR0A 2NMBA 3D8FA 3G9WA 2D9ZA 2R09A 2YVCA 3PZDA 2UZRA 5D27A 3CIKA 2P0FA 4HDQA 3V5WA 1LB1A 4EJNA 2DX1A 4K81A 1U5EA 2Z0OA 2ELAA 4CYEA 4HAXB 2YS1A 4Z2NA 1AQCA 3P6AA 3PVLA 2CAYA 4QJ4B 1H4RA 2HE7A 1H10A 2V76A 1IRSA 1NU2A 3SUZA 2I5CA 4C0AA 3TW1A 4WJ7A 1X11A 3FSSA 3ODWA 1UNPA 4CHJA 5LG4B 4F7GA 3D8EA 4BBKA 3MPXA 4HHVA 2FJLA 2DN6A 1ZM0A 4KHAA 1T77A 1N3HA 2DLWA 4DXAB 5C5BA 2RVBB 2J59M 2I1KA 4A6FB 4KHBA 2D9YA 3AJ4A 1ZC3B 3U7DA 2UZSA 1SGHA 4HDOA 4YL8A 5DIFB 2LKOA 3TO1A 3P7ZA 1WJMA 1LW3A 4L6EA 1KZ7A 1WG7A 2K2JA 2L2IA 5C5BB 2KGXB 4GN1A 2Z13A 5DH9B 2Z14A 3PVUA 1DDVA 2COFA 2D9XA 2DYNA 1U27A 1EF1A 2I1JA 1V5PA 4XWXA 1Z87A 4GPTB 4PNKA 1U2BA 2KCJA 2R0DA 2DKQA 2Q13A 1W1GA 2CY5A 2MDXA 1K5GB 1V61A 1ZVRA 2W2XD 5FI1A 1U5DA 1BAKA 3NWAA 3SV1A 1ZC4B 2IFSA 3QBVB 2D10A 1WGQA 2YT1A 1BTNA 1XD4A 2NZ8B 1MIZB 2BCJA 1RRPB 2H7DA 3SO6A 4QXAB 5KQ1A 4HAWB 2DHJA 2E2XA 1FHOA 2P8VA 4HB3B 4ZRJA 1FOEA 4GMVA 4HATB 3KY9A 1DBHA 3NW8A 3AU5A 2MFQA 4CHMA 2HTHB 2K8EA 2D11A 1NTVA 2GCLA 2DHIA 1PMSA 1WGUA 2W2XC 1OMWA 3BJIA 2GJYA 2FJUB 3NWFA 4HAYB 5I2SA 2RLOA 2X18A 4EMOA 1UNQA 1DROA 1WI1A 3OHMB 1U5GA 2ZPYA 1X1FA 1XKEA 2MWNB 5CLQB 3DXCA 4K2PA 3KZ1A 3DXEA 1ZYIA 2Z59A 2G35A 2EMTA 2K49A 1J0WA 1DDMA 2J0MA 1QQGA 1FB8A 2D2QA 4A6HA 2K2UA 1XODA 2Z4DA 2D9WA 2YS5A 3ZVRA 3ULCA 1DDWA 5D3YA 3HIEA 2YT2A 5D3VA 4OSNA 3PEGA 4A6KA 1WVHA 2JP2A 1MK7B 3B77A 2DTCA 3VOQA 4D0NB 2NBVA 5HE3A 2EMSA 4D6WA 4IAPA 2L1CA 4QJ5B 3HK0A 2YSZA 3VIAA 3FM8C 4GZUA 4GOUA 2QKMA 1J19A 2D9VA 2Z0QA 2P0DA 5D3WA 2P0HA 1X1GA 3BINA 3OANA 5I2MA 1PFJA 2QKLA 3SYXA 1V5UA 2KIGA 3NWDA 5J3YA 2AEHA 1ISNA 1SHCA 1WJ1A 1GG3A 3PP2A 2AL6A 2N0YA 4Y94A 2COAA 1B55A 3TFMA 5DHAB 4WVFB 4HB0B 5IRSA 3F0WA 3HSAA 4F7HA 5C16A 4DX90 2ZKMX 1FGYA 4B6HA 4GMXB 1EVHA 4IFSA 1FHXA 4GNKB 1U5FA 1FHWA 3X23A 1Y19B 2COCA 1BWNA 1OY2A 2M38A 4KHOA 4WSFA 3WYFB 4OT1A 2VSZA 3ULBA 3MDBC 4A6FA 2EJ8A 2KIEA 2PZ1A 1XX0A 3DCXA 1FAOA 2ADZA 5J3TA 3F5RA 2VKIA 5JP4A 1UEFA 2I5FA 2YRYA 3PG7A 1Q67A 1Y5OA 3GYPA 2VRWB 5C6RA 1NI2A 4EKUA 5EFXA 1V88A 4NSWA 2CRFA 3FVCA 4DIXA 1GC7A 4KHBB 2DA0A 2IYBA 5JHHA 3M1IB 3KRXA 3RCPA 1P5TA 1W1DA 5LONB 2YT0A 4NY0A 4YONA 5FI0A 2UVMA 2OTXA 3U8ZA 3LJUX 1W1HA 1P3RA 3D8DA 3DXDA 2ROVA 4TKNA 1BTKA 4A5KA 5L81A 1FGZA 2D4QA 2M14A 3QIJA 1MK9B 2GCJA 1U29A 2W2WA 4QJ3B 1KZGA 1DYNA 4K2OA 1NTYA 2RSGA 4F7UP 2Y8GA 1EAZA 4MT7A 4HSIA 2LOZA 2DHKA 2RRFA 3TCAA 4L1RA 5HE2A 4MK0A 1UPRA 3GYOA 2N23A 3KSYA 5DHFB 1I2HA 1XCGA 4HAZB 2Y8FA 2LULA 4HAUB 2Y7BA 4K17A 1MI1A 3ODXA 4HAVB 1TXDA 3PVWA 2GUMA 2DYQA 2R2YA 4CSQA 4P7IA 4DBBA 3CXBB 2CODA 3ZDTA 1MPHA 4KAXB 1TQZA 3ML4A 3QWMA 5J3QA 5GOWB 2RNRB 2GS0A 3A8QA 4KVGB 4Z2MB 5M4YB 5KQ4A 1E5WA 1XR0B 4GXBA
chains in the Genus database with same CATH topology
2YT2A 2KUQA 2ZKMX 4KHBA 4HSIA 4GOUA 3TW1A 4QXAB 4OSNA 2RRFA 3OHMB 4L1RA 3GYOA 4IFSA 4GNKB 3FSSA 3GYPA 5I2MA 3TO1A 2KIGA 3NWDA 3NWAA 3NW8A 2NBVA 4IOYX 4Z2NA 1ZYIA 2K8EA 2Z59A 5LG4B 4KHOA 4PQ0A 2K49A 4D6WA 2GCLA 4OT1A 4QJ5B 3A58A 3FVCA 2Z13A 4DIXA 4QJ4B 3U12A 4KHBB 4Z2MB 5M4YB 2GCJA 2GUMA 2Z14A 4KHAA 2R2YA 4QJ3B 2Z4DA 2FJUB 2KIEA 3TVVA 3NWFA 4CSQA 5IRSA 5I2SA 3HIEA 2KR0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KHB A; 
#chains in the Genus database with same CATH topology
 5HE1 A;  2KUQ A;  1M7E A;  4H8S A;  3ODO A;  3O96 A;  3IVF A;  5C79 A;  2LOX A;  4DX8 A;  3SNH A;  2DFK A;  3KRW A;  1QC6 A;  2K00 A;  3UZT A;  2DX5 A;  2ROZ B;  4IOY X;  1UPQ A;  1MKE A;  2YS3 A;  3A58 A;  3PSC A;  2J0J A;  3WA0 A;  3A8P A;  2J0K A;  2LYD A;  1GC6 A;  1K5D B;  3T06 A;  1MIX A;  1M7R A;  1AWE A;  1I7A A;  2CY4 A;  5CLL B;  1V89 A;  1KI1 B;  1X86 A;  2OQB A;  4MY6 A;  2RUK B;  1MAI A;  2EC1 A;  4HB2 B;  5LOP B;  3FEH A;  3HW2 B;  3U12 A;  5HE0 A;  2LG1 A;  5D3X A;  1X05 A;  3N7C A;  4ZRK A;  1TJ6 A;  2YF0 A;  1EGX A;  5KCV A;  4TYZ A;  1ZSQ A;  1UNR A;  3A98 B;  2DKP A;  2Z0P A;  4HB4 B;  3NSU A;  5JHG A;  4PQ0 A;  1OQN A;  2H7E A;  1PLS A;  2MKR A;  1RJ2 A;  5DI9 B;  1P6S A;  1V5M A;  2XQN M;  2ELB A;  3AU4 A;  2KUP A;  2RGN B;  4ZRI A;  3TVV A;  5JLJ B;  3HQC A;  2KR0 A;  2NMB A;  3D8F A;  3G9W A;  2D9Z A;  2R09 A;  2YVC A;  3PZD A;  2UZR A;  5D27 A;  3CIK A;  2P0F A;  4HDQ A;  3V5W A;  1LB1 A;  4EJN A;  2DX1 A;  4K81 A;  1U5E A;  2Z0O A;  2ELA A;  4CYE A;  4HAX B;  2YS1 A;  4Z2N A;  1AQC A;  3P6A A;  3PVL A;  2CAY A;  4QJ4 B;  1H4R A;  2HE7 A;  1H10 A;  2V76 A;  1IRS A;  1NU2 A;  3SUZ A;  2I5C A;  4C0A A;  3TW1 A;  4WJ7 A;  1X11 A;  3FSS A;  3ODW A;  1UNP A;  4CHJ A;  5LG4 B;  4F7G A;  3D8E A;  4BBK A;  3MPX A;  4HHV A;  2FJL A;  2DN6 A;  1ZM0 A;  4KHA A;  1T77 A;  1N3H A;  2DLW A;  4DXA B;  5C5B A;  2RVB B;  2J59 M;  2I1K A;  4A6F B;  4KHB A;  2D9Y A;  3AJ4 A;  1ZC3 B;  3U7D A;  2UZS A;  1SGH A;  4HDO A;  4YL8 A;  5DIF B;  2LKO A;  3TO1 A;  3P7Z A;  1WJM A;  1LW3 A;  4L6E A;  1KZ7 A;  1WG7 A;  2K2J A;  2L2I A;  5C5B B;  2KGX B;  4GN1 A;  2Z13 A;  5DH9 B;  2Z14 A;  3PVU A;  1DDV A;  2COF A;  2D9X A;  2DYN A;  1U27 A;  1EF1 A;  2I1J A;  1V5P A;  4XWX A;  1Z87 A;  4GPT B;  4PNK A;  1U2B A;  2KCJ A;  2R0D A;  2DKQ A;  2Q13 A;  1W1G A;  2CY5 A;  2MDX A;  1K5G B;  1V61 A;  1ZVR A;  2W2X D;  5FI1 A;  1U5D A;  1BAK A;  3NWA A;  3SV1 A;  1ZC4 B;  2IFS A;  3QBV B;  2D10 A;  1WGQ A;  2YT1 A;  1BTN A;  1XD4 A;  2NZ8 B;  1MIZ B;  2BCJ A;  1RRP B;  2H7D A;  3SO6 A;  4QXA B;  5KQ1 A;  4HAW B;  2DHJ A;  2E2X A;  1FHO A;  2P8V A;  4HB3 B;  4ZRJ A;  1FOE A;  4GMV A;  4HAT B;  3KY9 A;  1DBH A;  3NW8 A;  3AU5 A;  2MFQ A;  4CHM A;  2HTH B;  2K8E A;  2D11 A;  1NTV A;  2GCL A;  2DHI A;  1PMS A;  1WGU A;  2W2X C;  1OMW A;  3BJI A;  2GJY A;  2FJU B;  3NWF A;  4HAY B;  5I2S A;  2RLO A;  2X18 A;  4EMO A;  1UNQ A;  1DRO A;  1WI1 A;  3OHM B;  1U5G A;  2ZPY A;  1X1F A;  1XKE A;  2MWN B;  5CLQ B;  3DXC A;  4K2P A;  3KZ1 A;  3DXE A;  1ZYI A;  2Z59 A;  2G35 A;  2EMT A;  2K49 A;  1J0W A;  1DDM A;  2J0M A;  1QQG A;  1FB8 A;  2D2Q A;  4A6H A;  2K2U A;  1XOD A;  2Z4D A;  2D9W A;  2YS5 A;  3ZVR A;  3ULC A;  1DDW A;  5D3Y A;  3HIE A;  2YT2 A;  5D3V A;  4OSN A;  3PEG A;  4A6K A;  1WVH A;  2JP2 A;  1MK7 B;  3B77 A;  2DTC A;  3VOQ A;  4D0N B;  2NBV A;  5HE3 A;  2EMS A;  4D6W A;  4IAP A;  2L1C A;  4QJ5 B;  3HK0 A;  2YSZ A;  3VIA A;  3FM8 C;  4GZU A;  4GOU A;  2QKM A;  1J19 A;  2D9V A;  2Z0Q A;  2P0D A;  5D3W A;  2P0H A;  1X1G A;  3BIN A;  3OAN A;  5I2M A;  1PFJ A;  2QKL A;  3SYX A;  1V5U A;  2KIG A;  3NWD A;  5J3Y A;  2AEH A;  1ISN A;  1SHC A;  1WJ1 A;  1GG3 A;  3PP2 A;  2AL6 A;  2N0Y A;  4Y94 A;  2COA A;  1B55 A;  3TFM A;  5DHA B;  4WVF B;  4HB0 B;  5IRS A;  3F0W A;  3HSA A;  4F7H A;  5C16 A;  4DX9 0;  2ZKM X;  1FGY A;  4B6H A;  4GMX B;  1EVH A;  4IFS A;  1FHX A;  4GNK B;  1U5F A;  1FHW A;  3X23 A;  1Y19 B;  2COC A;  1BWN A;  1OY2 A;  2M38 A;  4KHO A;  4WSF A;  3WYF B;  4OT1 A;  2VSZ A;  3ULB A;  3MDB C;  4A6F A;  2EJ8 A;  2KIE A;  2PZ1 A;  1XX0 A;  3DCX A;  1FAO A;  2ADZ A;  5J3T A;  3F5R A;  2VKI A;  5JP4 A;  1UEF A;  2I5F A;  2YRY A;  3PG7 A;  1Q67 A;  1Y5O A;  3GYP A;  2VRW B;  5C6R A;  1NI2 A;  4EKU A;  5EFX A;  1V88 A;  4NSW A;  2CRF A;  3FVC A;  4DIX A;  1GC7 A;  4KHB B;  2DA0 A;  2IYB A;  5JHH A;  3M1I B;  3KRX A;  3RCP A;  1P5T A;  1W1D A;  5LON B;  2YT0 A;  4NY0 A;  4YON A;  5FI0 A;  2UVM A;  2OTX A;  3U8Z A;  3LJU X;  1W1H A;  1P3R A;  3D8D A;  3DXD A;  2ROV A;  4TKN A;  1BTK A;  4A5K A;  5L81 A;  1FGZ A;  2D4Q A;  2M14 A;  3QIJ A;  1MK9 B;  2GCJ A;  1U29 A;  2W2W A;  4QJ3 B;  1KZG A;  1DYN A;  4K2O A;  1NTY A;  2RSG A;  4F7U P;  2Y8G A;  1EAZ A;  4MT7 A;  4HSI A;  2LOZ A;  2DHK A;  2RRF A;  3TCA A;  4L1R A;  5HE2 A;  4MK0 A;  1UPR A;  3GYO A;  2N23 A;  3KSY A;  5DHF B;  1I2H A;  1XCG A;  4HAZ B;  2Y8F A;  2LUL A;  4HAU B;  2Y7B A;  4K17 A;  1MI1 A;  3ODX A;  4HAV B;  1TXD A;  3PVW A;  2GUM A;  2DYQ A;  2R2Y A;  4CSQ A;  4P7I A;  4DBB A;  3CXB B;  2COD A;  3ZDT A;  1MPH A;  4KAX B;  1TQZ A;  3ML4 A;  3QWM A;  5J3Q A;  5GOW B;  2RNR B;  2GS0 A;  3A8Q A;  4KVG B;  4Z2M B;  5M4Y B;  5KQ4 A;  1E5W A;  1XR0 B;  4GXB A; 
#chains in the Genus database with same CATH homology
 2YT2 A;  2KUQ A;  2ZKM X;  4KHB A;  4HSI A;  4GOU A;  3TW1 A;  4QXA B;  4OSN A;  2RRF A;  3OHM B;  4L1R A;  3GYO A;  4IFS A;  4GNK B;  3FSS A;  3GYP A;  5I2M A;  3TO1 A;  2KIG A;  3NWD A;  3NWA A;  3NW8 A;  2NBV A;  4IOY X;  4Z2N A;  1ZYI A;  2K8E A;  2Z59 A;  5LG4 B;  4KHO A;  4PQ0 A;  2K49 A;  4D6W A;  2GCL A;  4OT1 A;  4QJ5 B;  3A58 A;  3FVC A;  2Z13 A;  4DIX A;  4QJ4 B;  3U12 A;  4KHB B;  4Z2M B;  5M4Y B;  2GCJ A;  2GUM A;  2Z14 A;  4KHA A;  2R2Y A;  4QJ3 B;  2Z4D A;  2FJU B;  2KIE A;  3TVV A;  3NWF A;  4CSQ A;  5IRS A;  5I2S A;  3HIE A;  2KR0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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