The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
19
|
sequence length |
141
|
structure length |
141
|
Chain Sequence |
GSSGSSGAEFYDKQLKVLLSGATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDSHYEIEIVHISTVQILTEGFPPGGGNARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLLYESRDQSGPSSG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Zinc finger FYVE domain-containing protein 21
|
| publication title |
ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| molecule tags |
Unknown function
|
| total genus |
19
|
| structure length |
141
|
| sequence length |
141
|
| ec nomenclature | |
| pdb deposition date | 2010-08-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16696 | ZFYVE21_C | Zinc finger FYVE domain-containing protein 21 C-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | PH-domain like | PH-domain like |
#chains in the Genus database with same CATH superfamily 2RRF A; #chains in the Genus database with same CATH topology 1H4R A; 5HE2 A; 4KVG B; 1P3R A; 2R2Y A; 3TFM A; 2N23 A; 1V61 A; 1EVH A; 1BWN A; 1V5P A; 2D9V A; 3PVW A; 2W2X C; 5C5B A; 4Y94 A; 1V5M A; 4GN1 A; 1FGY A; 4GZU A; 2Z0P A; 1ZSQ A; 3PVL A; 2RRF A; 1WG7 A; 2J0K A; 4A6F B; 2Z4D A; 1X1G A; 2D10 A; 2GCJ A; 2OTX A; 2NBV A; 5GOW B; 2MFQ A; 5DH9 B; 2KUQ A; 4D6W A; 3TCA A; 4YL8 A; 2FJU B; 2RGN B; 1NTV A; 1BTN A; 4WVF B; 1TXD A; 4F7U P; 2P8V A; 4KHO A; 2COC A; 2KIE A; 3DCX A; 4ZRJ A; 5D3V A; 1T77 A; 2VRW B; 3FEH A; 2YS3 A; 1XOD A; 2AL6 A; 4KHB B; 5CLQ B; 1DBH A; 1U2B A; 3VOQ A; 3VIA A; 2D9Z A; 2R0D A; 1AWE A; 2VSZ A; 5JLJ B; 4F7H A; 2Q13 A; 3G9W A; 2DFK A; 4F7G A; 3PP2 A; 4HAU B; 2EMT A; 2Y7B A; 4CSQ A; 1PMS A; 2ELB A; 2AEH A; 5HE1 A; 1I2H A; 4HAY B; 2L2I A; 3NSU A; 3FVC A; 4ZRK A; 1DYN A; 3PG7 A; 4YON A; 2Z13 A; 4EKU A; 3ML4 A; 3SV1 A; 1OY2 A; 3A8P A; 1V89 A; 4PQ0 A; 4DX8 A; 2NZ8 B; 2J59 M; 5DIF B; 3HQC A; 4KAX B; 5LON B; 2EC1 A; 1V5U A; 3KSY A; 4GPT B; 4GOU A; 4H8S A; 1WJ1 A; 3F0W A; 2H7D A; 2MWN B; 4XWX A; 1X05 A; 5KQ1 A; 3P7Z A; 2JP2 A; 4L1R A; 2KCJ A; 5HE3 A; 1KI1 B; 4DX9 0; 1LW3 A; 2QKM A; 4B6H A; 1UPR A; 1MKE A; 2Z14 A; 3T06 A; 3KZ1 A; 1GC7 A; 2H7E A; 4ZRI A; 5KQ4 A; 2DHK A; 5C5B B; 1UNP A; 3HW2 B; 2GJY A; 3PSC A; 2YS1 A; 1WGU A; 5C6R A; 5HE0 A; 1XCG A; 2ROZ B; 5DHA B; 2KUP A; 4OSN A; 4HAZ B; 1U29 A; 3UZT A; 1X11 A; 1MIX A; 3SNH A; 4EMO A; 1J0W A; 1FHX A; 3ODX A; 1XKE A; 4CHM A; 4HB3 B; 5I2S A; 2DKQ A; 5EFX A; 1U5D A; 2CRF A; 1FAO A; 1SGH A; 4TYZ A; 3KRX A; 1MIZ B; 1LB1 A; 4A6H A; 2I5C A; 1H10 A; 4GMV A; 1MAI A; 1IRS A; 2KGX B; 3FSS A; 1FGZ A; 4MT7 A; 1BAK A; 2EMS A; 1MI1 A; 5JHH A; 3HSA A; 1FHO A; 2LKO A; 4HDQ A; 4DBB A; 5LG4 B; 5DHF B; 4NSW A; 1V88 A; 3X23 A; 4L6E A; 2GS0 A; 2DX5 A; 2DKP A; 3ZDT A; 3U8Z A; 2BCJ A; 2YS5 A; 1B55 A; 1ZVR A; 5DI9 B; 3KY9 A; 2DN6 A; 3HK0 A; 2DHJ A; 3DXC A; 2N0Y A; 2K2U A; 2D4Q A; 4MK0 A; 2DYN A; 1U5F A; 4DIX A; 4HAT B; 5J3Q A; 1X1F A; 1KZ7 A; 2D9W A; 4HAV B; 3D8E A; 2KIG A; 4WSF A; 3NWA A; 4GNK B; 3ZVR A; 3A8Q A; 2IYB A; 4BBK A; 2X18 A; 3QBV B; 4CHJ A; 2D9X A; 2LUL A; 3P6A A; 1DRO A; 2P0D A; 4D0N B; 1Z87 A; 2ADZ A; 1M7E A; 4K81 A; 1K5D B; 3SUZ A; 3SO6 A; 2K00 A; 2J0J A; 2PZ1 A; 4CYE A; 3MPX A; 2ROV A; 4EJN A; 1K5G B; 1NTY A; 1BTK A; 3ULB A; 2M14 A; 1FB8 A; 1GC6 A; 2CY4 A; 3D8D A; 4HB0 B; 1UNR A; 1J19 A; 2GUM A; 3HIE A; 3TVV A; 2NMB A; 5JP4 A; 4K2O A; 5L81 A; 2MKR A; 3QIJ A; 2HTH B; 4QJ4 B; 2YT1 A; 4K17 A; 3N7C A; 4GXB A; 4WJ7 A; 3MDB C; 2P0H A; 5CLL B; 1P5T A; 1NI2 A; 2ZKM X; 1ISN A; 2RLO A; 4C0A A; 1ZYI A; 3QWM A; 2FJL A; 5I2M A; 1KZG A; 5FI1 A; 1U5G A; 4PNK A; 3V5W A; 4KHA A; 1TQZ A; 4DXA B; 2K49 A; 5J3Y A; 2QKL A; 3LJU X; 3OHM B; 2DA0 A; 2P0F A; 4GMX B; 4K2P A; 1GG3 A; 2Z59 A; 2COF A; 3U7D A; 2L1C A; 2RNR B; 3PEG A; 4P7I A; 2COD A; 3B77 A; 1UPQ A; 2E2X A; 2UZS A; 5D27 A; 4HB2 B; 1TJ6 A; 2ELA A; 1PLS A; 5IRS A; 5J3T A; 2COA A; 4A6K A; 3BIN A; 3IVF A; 3TO1 A; 1QC6 A; 1U27 A; 3F5R A; 4HSI A; 2D2Q A; 4QXA B; 5C79 A; 1XR0 B; 1ZC4 B; 2DLW A; 5KCV A; 1DDM A; 4MY6 A; 3OAN A; 4QJ5 B; 3CXB B; 3U12 A; 4IOY X; 1FOE A; 2YF0 A; 1EF1 A; 4HAW B; 2RVB B; 2MDX A; 1SHC A; 3PZD A; 2YT0 A; 2D9Y A; 2I1J A; 2IFS A; 1Y19 B; 2J0M A; 2W2W A; 3TW1 A; 4IFS A; 2OQB A; 1WGQ A; 4HDO A; 2CY5 A; 1M7R A; 5D3W A; 3SYX A; 2CAY A; 1MK7 B; 2LG1 A; 1X86 A; 2Z0O A; 1Q67 A; 2UVM A; 2LYD A; 2K2J A; 3KRW A; 2YSZ A; 2DHI A; 1W1G A; 3WA0 A; 3GYP A; 5D3Y A; 3NWD A; 1OQN A; 3D8F A; 2V76 A; 3GYO A; 4HB4 B; 2I1K A; 4A6F A; 2DX1 A; 1N3H A; 2LOZ A; 2YRY A; 1W1H A; 1U5E A; 2D11 A; 3AU5 A; 3PVU A; 1FHW A; 2Y8F A; 2YVC A; 1P6S A; 5LOP B; 1UNQ A; 2GCL A; 2Z0Q A; 1RJ2 A; 4HHV A; 1QQG A; 4NY0 A; 1EGX A; 1W1D A; 3A98 B; 2I5F A; 3CIK A; 2EJ8 A; 1DDV A; 5D3X A; 3NW8 A; 2YT2 A; 1XX0 A; 1MK9 B; 3AU4 A; 4KHB A; 3WYF B; 4A5K A; 3NWF A; 2UZR A; 1XD4 A; 2G35 A; 1ZC3 B; 1Y5O A; 5FI0 A; 1I7A A; 1UEF A; 4HAX B; 2K8E A; 1NU2 A; 2VKI A; 2Y8G A; 5JHG A; 1WJM A; 3A58 A; 1E5W A; 1OMW A; 1ZM0 A; 3O96 A; 3AJ4 A; 2HE7 A; 1DDW A; 2XQN M; 2RUK B; 2DYQ A; 1MPH A; 2RSG A; 4TKN A; 4IAP A; 1EAZ A; 3ULC A; 1AQC A; 5M4Y B; 3DXE A; 2DTC A; 1WVH A; 4Z2N A; 1WI1 A; 3DXD A; 2LOX A; 3ODW A; 1PFJ A; 2KR0 A; 4QJ3 B; 3ODO A; 1RRP B; 2W2X D; 5C16 A; 2R09 A; 2M38 A; 2ZPY A; 3FM8 C; 4OT1 A; 4Z2M B; 3RCP A; 3M1I B; 3BJI A; #chains in the Genus database with same CATH homology 3HIE A; 3NWD A; 3FVC A; 2NBV A; 2Z14 A; 3GYO A; 4DIX A; 4KHA A; 2R2Y A; 2Z13 A; 5LG4 B; 4KHB B; 2K49 A; 3NW8 A; 2KUQ A; 2YT2 A; 4D6W A; 5IRS A; 3OHM B; 4QJ4 B; 5I2S A; 3TW1 A; 3TO1 A; 4PQ0 A; 4KHB A; 2FJU B; 4IFS A; 4HSI A; 3NWF A; 5M4Y B; 2KIG A; 4QXA B; 4Z2N A; 3NWA A; 2Z59 A; 4GNK B; 4CSQ A; 2ZKM X; 4GOU A; 2KR0 A; 1ZYI A; 2K8E A; 2GCL A; 4KHO A; 4QJ3 B; 4QJ5 B; 3TVV A; 5I2M A; 3U12 A; 4OSN A; 2RRF A; 3A58 A; 4IOY X; 2KIE A; 4L1R A; 4OT1 A; 4Z2M B; 3FSS A; 2Z4D A; 3GYP A; 2GUM A; 2GCJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
