2R2YA

Crystal structure of the proteasomal rpn13 pru-domain
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
109
structure length
109
Chain Sequence
YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (37-40)S3 (45-51)TVIII1 (22-25)TI4 (88-91)S1 (24-34)TI1 (52-55)TIV1 (33-36)S4 (57-63)TVIII2 (98-101)S5 (69-74)TI2 (64-67)TIV2 (63-66)S6 (80-84)TII1 (76-79)S7 (93-98)TIV3 (99-102)S8 (104-109)TI3 (85-88)Updating...
connected with : NaN
molecule tags Protein binding
source organism Mus musculus
publication title Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction.
pubmed doi rcsb
molecule keywords Protein ADRM1
total genus 27
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2007-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04683 Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.70 Mainly Beta Roll PH-domain like PH-domain like 2r2yA00
2Z59A 2Z4DA 2NBVA 2R2YA 2KR0A 5IRSA
chains in the Genus database with same CATH superfamily
3G9WA 1Z87A 3ODXA 1MAIA 1XR0B 3FVCA 1I2HA 3GYPA 4Z2NA 4K2PA 2K00A 3AJ4A 2BCJA 3V5WA 4DX90 4Y94A 5KQ4A 1MI1A 4NY0A 1SHCA 2YVCA 3PEGA 1H10A 1XODA 1FGYA 4HHVA 3U7DA 2KUPA 4A5KA 5C79A 2N0YA 2XQNM 3KY9A 1P3RA 3KRXA 1V88A 2R0DA 1DROA 4EMOA 2D11A 3TFMA 3PG7A 2I5CA 1XCGA 4HAVB 1WI1A 5DHFB 3UZTA 4DXAB 3AU5A 3SNHA 1NI2A 5IRSA 2CY5A 3PVLA 5GOWB 2I5FA 2DKPA 2FJUB 2K49A 2NMBA 1BAKA 3ML4A 3QWMA 1WJ1A 2V76A 1W1DA 3NWFA 2UZSA 2LYDA 1UNRA 3SO6A 1V5MA 1I7AA 2Y8GA 5KQ1A 2Z59A 3QBVB 2OQBA 3FSSA 4GPTB 5HE1A 4BBKA 1KZGA 1Q67A 3OHMB 2Z13A 2D9VA 5LG4B 1EF1A 2Z0QA 2R2YA 3M1IB 1MK9B 4Z2MB 3HIEA 1OY2A 2GCJA 4EKUA 1RJ2A 5HE2A 3U12A 2DYNA 3FM8C 3A8PA 4H8SA 4HDQA 1WJMA 4HB4B 1DDMA 4B6HA 4K81A 2N23A 2RVBB 1GG3A 2COCA 2QKMA 1M7RA 2FJLA 1MIZB 2RGNB 4WVFB 1ZYIA 2COAA 4KHBA 2Y7BA 1W1HA 2LOZA 2RNRB 1FB8A 3PVUA 4GMVA 5C5BA 4GZUA 4F7GA 4PNKA 5D3XA 4K2OA 4KHAA 4DBBA 5DIFB 3LJUX 1X86A 2HTHB 4GNKB 2L1CA 5JP4A 1EAZA 5LONB 2M38A 1BWNA 2Q13A 1ISNA 4HB0B 1DDWA 2KIEA 1U5GA 1EGXA 2M14A 3NWAA 3SUZA 3KRWA 1KZ7A 3PP2A 2UZRA 1FHOA 2R09A 4KAXB 1MK7B 2QKLA 3SYXA 4HSIA 4IAPA 3HQCA 2K2UA 1UPQA 4F7UP 3P6AA 3IVFA 4WSFA 1KI1B 1V5PA 4WJ7A 2DFKA 2KUQA 2Z0PA 4P7IA 5FI1A 1WGQA 4QJ5B 2GS0A 3TW1A 2DX1A 3VIAA 4HAZB 2GCLA 4A6FB 3ODOA 1PLSA 4KHBB 5EFXA 5JLJB 1Y19B 4L6EA 2YS3A 2DN6A 3GYOA 3DXEA 5C5BB 1TXDA 1V5UA 2ZKMX 1E5WA 1AQCA 2GUMA 4YONA 3ULBA 2AEHA 1GC7A 4TYZA 4HB3B 4HAWB 2J0JA 4XWXA 2K2JA 1UNQA 4CYEA 5KCVA 2RUKB 2YRYA 2ROVA 3DCXA 4A6HA 3SV1A 3F5RA 3NWDA 4TKNA 1X11A 2DA0A 4HAXB 4A6KA 2KCJA 4PQ0A 3KSYA 2DYQA 1IRSA 1MKEA 1J19A 1V89A 3BINA 4QXAB 4DX8A 1RRPB 1AWEA 2CAYA 3TVVA 2EMTA 3CXBB 1FOEA 1SGHA 4A6FA 5C6RA 1PFJA 1ZVRA 2ADZA 3AU4A 5DH9B 1MPHA 3KZ1A 4KHOA 5D3WA 2EMSA 1FHXA 1M7EA 3ZDTA 1DBHA 2MFQA 3D8FA 5D3YA 2IYBA 5HE3A 2DX5A 3FEHA 3DXDA 2J0KA 2MDXA 2YT1A 5JHHA 2YSZA 1U5EA 2X18A 1XD4A 1U5DA 2NZ8B 2DLWA 2RLOA 4NSWA 5DI9B 4C0AA 2J0MA 2LG1A 2IFSA 2KR0A 4MY6A 5CLQB 2VSZA 2ELAA 4CSQA 1ZC4B 2P8VA 3A8QA 5CLLB 1QC6A 2W2WA 2ROZB 4KVGB 2DHJA 2UVMA 2KGXB 1XX0A 2MKRA 3ODWA 1OQNA 3PVWA 4EJNA 2YF0A 5D3VA 4IFSA 5J3YA 1MIXA 2Z0OA 2EC1A 3N7CA 4CHJA 3NSUA 2Z4DA 1B55A 1K5GB 5JHGA 3MPXA 2RSGA 2LKOA 2I1KA 1EVHA 4F7HA 3QIJA 1PMSA 1N3HA 1U2BA 2G35A 4QJ4B 2Z14A 3CIKA 1P6SA 1DDVA 4HB2B 2D4QA 2D9WA 4MT7A 2CRFA 2YS1A 2DHKA 4HDOA 3PSCA 4D0NB 2E2XA 3B77A 1W1GA 4GXBA 1LW3A 2NBVA 3O96A 3F0WA 5LOPB 5HE0A 2AL6A 1J0WA 3A58A 4L1RA 5DHAB 1T77A 5I2MA 5FI0A 2HE7A 2H7EA 2P0DA 4OSNA 1X1FA 2COFA 2LOXA 2PZ1A 1ZSQA 1WVHA 3D8EA 2I1JA 1ZM0A 3U8ZA 3P7ZA 1ZC3B 3TO1A 4IOYX 4YL8A 4HATB 3ULCA 2D9YA 2W2XC 4D6WA 1X05A 3A98B 1NTYA 3OANA 1DYNA 2YT0A 2GJYA 2OTXA 2YT2A 1FGZA 5I2SA 3HK0A 2D9XA 1QQGA 3RCPA 2EJ8A 4GMXB 2P0FA 3WYFB 3NW8A 1NTVA 2VKIA 1X1GA 5L81A 2DHIA 1XKEA 2P0HA 1UPRA 1Y5OA 1FAOA 3HW2B 2D2QA 5D27A 2K8EA 1BTKA 2J59M 1GC6A 2ELBA 2JP2A 2ZPYA 2MWNB 4DIXA 4HAUB 2YS5A 1V61A 4ZRIA 1TQZA 5J3QA 2DKQA 4K17A 1LB1A 5J3TA 2RRFA 3ZVRA 3T06A 4OT1A 1P5TA 5M4YB 3DXCA 3MDBC 4HAYB 4CHMA 4GOUA 2DTCA 2L2IA 4MK0A 4QJ3B 4GN1A 4ZRKA 4ZRJA 1FHWA 1WGUA 2VRWB 2D9ZA 1BTNA 2H7DA 1TJ6A 3X23A 5C16A 3BJIA 1U27A 1UEFA 2D10A 3HSAA 2KIGA 3VOQA 1OMWA 2LULA 1UNPA 3WA0A 3D8DA 1H4RA 1U5FA 2Y8FA 1WG7A 1U29A 2W2XD 2CY4A 1NU2A 1K5DB 2CODA 3PZDA 3TCAA
chains in the Genus database with same CATH topology
4DIXA 2YT2A 3A58A 4L1RA 3TW1A 3FVCA 5I2MA 5I2SA 3U12A 2Z4DA 3GYPA 4Z2NA 2GCLA 4KHAA 4QXAB 2Z59A 4OSNA 2RRFA 3TVVA 3NW8A 4GNKB 4KHBB 4QJ4B 2Z14A 2KIGA 3FSSA 4OT1A 4IFSA 5IRSA 4HSIA 5M4YB 3OHMB 2Z13A 3GYOA 5LG4B 3NWDA 2K49A 2FJUB 2R2YA 3TO1A 1ZYIA 4IOYX 2KR0A 4D6WA 2ZKMX 4KHBA 4CSQA 2KIEA 2GUMA 4Z2MB 2K8EA 2NBVA 3HIEA 3NWFA 3NWAA 4GOUA 2GCJA 4KHOA 2KUQA 4QJ3B 4PQ0A 4QJ5B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z59 A;  2Z4D A;  2NBV A;  2R2Y A;  2KR0 A;  5IRS A; 
#chains in the Genus database with same CATH topology
 3G9W A;  1Z87 A;  3ODX A;  1MAI A;  1XR0 B;  3FVC A;  1I2H A;  3GYP A;  4Z2N A;  4K2P A;  2K00 A;  3AJ4 A;  2BCJ A;  3V5W A;  4DX9 0;  4Y94 A;  5KQ4 A;  1MI1 A;  4NY0 A;  1SHC A;  2YVC A;  3PEG A;  1H10 A;  1XOD A;  1FGY A;  4HHV A;  3U7D A;  2KUP A;  4A5K A;  5C79 A;  2N0Y A;  2XQN M;  3KY9 A;  1P3R A;  3KRX A;  1V88 A;  2R0D A;  1DRO A;  4EMO A;  2D11 A;  3TFM A;  3PG7 A;  2I5C A;  1XCG A;  4HAV B;  1WI1 A;  5DHF B;  3UZT A;  4DXA B;  3AU5 A;  3SNH A;  1NI2 A;  5IRS A;  2CY5 A;  3PVL A;  5GOW B;  2I5F A;  2DKP A;  2FJU B;  2K49 A;  2NMB A;  1BAK A;  3ML4 A;  3QWM A;  1WJ1 A;  2V76 A;  1W1D A;  3NWF A;  2UZS A;  2LYD A;  1UNR A;  3SO6 A;  1V5M A;  1I7A A;  2Y8G A;  5KQ1 A;  2Z59 A;  3QBV B;  2OQB A;  3FSS A;  4GPT B;  5HE1 A;  4BBK A;  1KZG A;  1Q67 A;  3OHM B;  2Z13 A;  2D9V A;  5LG4 B;  1EF1 A;  2Z0Q A;  2R2Y A;  3M1I B;  1MK9 B;  4Z2M B;  3HIE A;  1OY2 A;  2GCJ A;  4EKU A;  1RJ2 A;  5HE2 A;  3U12 A;  2DYN A;  3FM8 C;  3A8P A;  4H8S A;  4HDQ A;  1WJM A;  4HB4 B;  1DDM A;  4B6H A;  4K81 A;  2N23 A;  2RVB B;  1GG3 A;  2COC A;  2QKM A;  1M7R A;  2FJL A;  1MIZ B;  2RGN B;  4WVF B;  1ZYI A;  2COA A;  4KHB A;  2Y7B A;  1W1H A;  2LOZ A;  2RNR B;  1FB8 A;  3PVU A;  4GMV A;  5C5B A;  4GZU A;  4F7G A;  4PNK A;  5D3X A;  4K2O A;  4KHA A;  4DBB A;  5DIF B;  3LJU X;  1X86 A;  2HTH B;  4GNK B;  2L1C A;  5JP4 A;  1EAZ A;  5LON B;  2M38 A;  1BWN A;  2Q13 A;  1ISN A;  4HB0 B;  1DDW A;  2KIE A;  1U5G A;  1EGX A;  2M14 A;  3NWA A;  3SUZ A;  3KRW A;  1KZ7 A;  3PP2 A;  2UZR A;  1FHO A;  2R09 A;  4KAX B;  1MK7 B;  2QKL A;  3SYX A;  4HSI A;  4IAP A;  3HQC A;  2K2U A;  1UPQ A;  4F7U P;  3P6A A;  3IVF A;  4WSF A;  1KI1 B;  1V5P A;  4WJ7 A;  2DFK A;  2KUQ A;  2Z0P A;  4P7I A;  5FI1 A;  1WGQ A;  4QJ5 B;  2GS0 A;  3TW1 A;  2DX1 A;  3VIA A;  4HAZ B;  2GCL A;  4A6F B;  3ODO A;  1PLS A;  4KHB B;  5EFX A;  5JLJ B;  1Y19 B;  4L6E A;  2YS3 A;  2DN6 A;  3GYO A;  3DXE A;  5C5B B;  1TXD A;  1V5U A;  2ZKM X;  1E5W A;  1AQC A;  2GUM A;  4YON A;  3ULB A;  2AEH A;  1GC7 A;  4TYZ A;  4HB3 B;  4HAW B;  2J0J A;  4XWX A;  2K2J A;  1UNQ A;  4CYE A;  5KCV A;  2RUK B;  2YRY A;  2ROV A;  3DCX A;  4A6H A;  3SV1 A;  3F5R A;  3NWD A;  4TKN A;  1X11 A;  2DA0 A;  4HAX B;  4A6K A;  2KCJ A;  4PQ0 A;  3KSY A;  2DYQ A;  1IRS A;  1MKE A;  1J19 A;  1V89 A;  3BIN A;  4QXA B;  4DX8 A;  1RRP B;  1AWE A;  2CAY A;  3TVV A;  2EMT A;  3CXB B;  1FOE A;  1SGH A;  4A6F A;  5C6R A;  1PFJ A;  1ZVR A;  2ADZ A;  3AU4 A;  5DH9 B;  1MPH A;  3KZ1 A;  4KHO A;  5D3W A;  2EMS A;  1FHX A;  1M7E A;  3ZDT A;  1DBH A;  2MFQ A;  3D8F A;  5D3Y A;  2IYB A;  5HE3 A;  2DX5 A;  3FEH A;  3DXD A;  2J0K A;  2MDX A;  2YT1 A;  5JHH A;  2YSZ A;  1U5E A;  2X18 A;  1XD4 A;  1U5D A;  2NZ8 B;  2DLW A;  2RLO A;  4NSW A;  5DI9 B;  4C0A A;  2J0M A;  2LG1 A;  2IFS A;  2KR0 A;  4MY6 A;  5CLQ B;  2VSZ A;  2ELA A;  4CSQ A;  1ZC4 B;  2P8V A;  3A8Q A;  5CLL B;  1QC6 A;  2W2W A;  2ROZ B;  4KVG B;  2DHJ A;  2UVM A;  2KGX B;  1XX0 A;  2MKR A;  3ODW A;  1OQN A;  3PVW A;  4EJN A;  2YF0 A;  5D3V A;  4IFS A;  5J3Y A;  1MIX A;  2Z0O A;  2EC1 A;  3N7C A;  4CHJ A;  3NSU A;  2Z4D A;  1B55 A;  1K5G B;  5JHG A;  3MPX A;  2RSG A;  2LKO A;  2I1K A;  1EVH A;  4F7H A;  3QIJ A;  1PMS A;  1N3H A;  1U2B A;  2G35 A;  4QJ4 B;  2Z14 A;  3CIK A;  1P6S A;  1DDV A;  4HB2 B;  2D4Q A;  2D9W A;  4MT7 A;  2CRF A;  2YS1 A;  2DHK A;  4HDO A;  3PSC A;  4D0N B;  2E2X A;  3B77 A;  1W1G A;  4GXB A;  1LW3 A;  2NBV A;  3O96 A;  3F0W A;  5LOP B;  5HE0 A;  2AL6 A;  1J0W A;  3A58 A;  4L1R A;  5DHA B;  1T77 A;  5I2M A;  5FI0 A;  2HE7 A;  2H7E A;  2P0D A;  4OSN A;  1X1F A;  2COF A;  2LOX A;  2PZ1 A;  1ZSQ A;  1WVH A;  3D8E A;  2I1J A;  1ZM0 A;  3U8Z A;  3P7Z A;  1ZC3 B;  3TO1 A;  4IOY X;  4YL8 A;  4HAT B;  3ULC A;  2D9Y A;  2W2X C;  4D6W A;  1X05 A;  3A98 B;  1NTY A;  3OAN A;  1DYN A;  2YT0 A;  2GJY A;  2OTX A;  2YT2 A;  1FGZ A;  5I2S A;  3HK0 A;  2D9X A;  1QQG A;  3RCP A;  2EJ8 A;  4GMX B;  2P0F A;  3WYF B;  3NW8 A;  1NTV A;  2VKI A;  1X1G A;  5L81 A;  2DHI A;  1XKE A;  2P0H A;  1UPR A;  1Y5O A;  1FAO A;  3HW2 B;  2D2Q A;  5D27 A;  2K8E A;  1BTK A;  2J59 M;  1GC6 A;  2ELB A;  2JP2 A;  2ZPY A;  2MWN B;  4DIX A;  4HAU B;  2YS5 A;  1V61 A;  4ZRI A;  1TQZ A;  5J3Q A;  2DKQ A;  4K17 A;  1LB1 A;  5J3T A;  2RRF A;  3ZVR A;  3T06 A;  4OT1 A;  1P5T A;  5M4Y B;  3DXC A;  3MDB C;  4HAY B;  4CHM A;  4GOU A;  2DTC A;  2L2I A;  4MK0 A;  4QJ3 B;  4GN1 A;  4ZRK A;  4ZRJ A;  1FHW A;  1WGU A;  2VRW B;  2D9Z A;  1BTN A;  2H7D A;  1TJ6 A;  3X23 A;  5C16 A;  3BJI A;  1U27 A;  1UEF A;  2D10 A;  3HSA A;  2KIG A;  3VOQ A;  1OMW A;  2LUL A;  1UNP A;  3WA0 A;  3D8D A;  1H4R A;  1U5F A;  2Y8F A;  1WG7 A;  1U29 A;  2W2X D;  2CY4 A;  1NU2 A;  1K5D B;  2COD A;  3PZD A;  3TCA A; 
#chains in the Genus database with same CATH homology
 4DIX A;  2YT2 A;  3A58 A;  4L1R A;  3TW1 A;  3FVC A;  5I2M A;  5I2S A;  3U12 A;  2Z4D A;  3GYP A;  4Z2N A;  2GCL A;  4KHA A;  4QXA B;  2Z59 A;  4OSN A;  2RRF A;  3TVV A;  3NW8 A;  4GNK B;  4KHB B;  4QJ4 B;  2Z14 A;  2KIG A;  3FSS A;  4OT1 A;  4IFS A;  5IRS A;  4HSI A;  5M4Y B;  3OHM B;  2Z13 A;  3GYO A;  5LG4 B;  3NWD A;  2K49 A;  2FJU B;  2R2Y A;  3TO1 A;  1ZYI A;  4IOY X;  2KR0 A;  4D6W A;  2ZKM X;  4KHB A;  4CSQ A;  2KIE A;  2GUM A;  4Z2M B;  2K8E A;  2NBV A;  3HIE A;  3NWF A;  3NWA A;  4GOU A;  2GCJ A;  4KHO A;  2KUQ A;  4QJ3 B;  4PQ0 A;  4QJ5 B; 
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similar chains in the pdb database (?% sequence similarity)

 
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