2Z59 | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	109
structure length	109
Chain Sequence	YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Mus musculus
publication title	Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction. pubmed doi rcsb
molecule keywords	Protein ADRM1
total genus	26
structure length	109
sequence length	109
ec nomenclature
pdb deposition date	2007-07-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04683	Proteasom_Rpn13	Proteasome complex subunit Rpn13 ubiquitin receptor

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.29.70	Mainly Beta	Roll	PH-domain like	PH-domain like	2z59A00

2R2YA 2KR0A 5IRSA 2Z4DA 2NBVA 2Z59A
chains in the Genus database with same CATH superfamily

3WYFB 2NMBA 4IFSA 2VKIA 1W1HA 2YS1A 4D6WA 3B77A 1U29A 4PNKA 3AU4A 1K5DB 1B55A 1PFJA 2PZ1A 2DFKA 1EGXA 2YF0A 3HIEA 3ODOA 1PLSA 3DCXA 1MK9B 5LG4B 1FHOA 1OQNA 3HSAA 2W2XC 2I1KA 2L1CA 4CHMA 5J3QA 1DYNA 1V5PA 2DKPA 3D8DA 5JP4A 1WJ1A 4YL8A 1GC7A 5M4YB 1MPHA 3CXBB 4TKNA 1SGHA 3TO1A 4MK0A 2W2WA 2DN6A 3DXDA 4L6EA 2P0FA 4XWXA 2QKMA 3BINA 3HW2B 2I5FA 2EMSA 4QXAB 2Y7BA 5I2MA 3NSUA 2DHJA 4HB4B 3MPXA 3FVCA 3OHMB 1EF1A 1U2BA 1U27A 1SHCA 2ZKMX 4HAVB 4A5KA 3CIKA 3O96A 5FI0A 4HSIA 2YS5A 1U5DA 1ISNA 2DLWA 2J59M 4HHVA 5C5BB 1FAOA 3VOQA 2XQNM 4GN1A 5HE2A 5DIFB 2D9ZA 2FJUB 4GXBA 4GMXB 2GCJA 4DX90 3ML4A 4MY6A 3G9WA 2YT0A 4PQ0A 2DHIA 3F5RA 1KZ7A 1OMWA 4F7GA 5LONB 2P8VA 3M1IB 1I7AA 1TXDA 3VIAA 3GYOA 5L81A 4DBBA 1MIZB 1UPQA 1W1DA 3SUZA 2Y8FA 2EC1A 1ZSQA 1UEFA 1X1GA 3PVUA 2R09A 1X11A 1PMSA 1V61A 2UZRA 3UZTA 3SO6A 1WGQA 4HB3B 2CY4A 5D3XA 1X86A 2D4QA 4L1RA 3D8EA 1ZC4B 2COFA 3OANA 4DIXA 2IYBA 1J0WA 2COCA 2VRWB 2Z0QA 2CRFA 1P3RA 4KHOA 3V5WA 3AJ4A 2Y8GA 3PSCA 1W1GA 4GNKB 4WSFA 5C16A 2D9YA 2K2UA 1V5UA 2Z4DA 2D9WA 5DI9B 1U5EA 1V89A 5C5BA 2RSGA 3TCAA 4D0NB 3P7ZA 2COAA 1E5WA 4HB2B 4BBKA 3A58A 2H7EA 4KHAA 2Z59A 3TFMA 2FJLA 2K2JA 4YONA 1TJ6A 2I1JA 1Z87A 1LB1A 2DYNA 3ODXA 5JLJB 4F7HA 2KCJA 2UVMA 3FEHA 1AWEA 2HTHB 3ODWA 3X23A 5KCVA 4EMOA 4F7UP 5EFXA 1V88A 2RLOA 3QIJA 4IOYX 4KAXB 4A6KA 2D2QA 1MAIA 3HQCA 5HE1A 3GYPA 1N3HA 3N7CA 4HAUB 1EVHA 1NTVA 2QKLA 2LOZA 2RRFA 3MDBC 1XR0B 2CODA 2KUQA 3AU5A 2MKRA 4HDQA 2Z14A 5CLLB 2KIEA 3F0WA 4GMVA 5J3TA 3NWDA 1P6SA 5J3YA 3LJUX 3U12A 4HB0B 2V76A 2LOXA 1MK7B 1DDWA 3PEGA 4H8SA 3SNHA 1TQZA 4P7IA 2YT1A 2GS0A 2N0YA 1U5GA 2D11A 1WJMA 1FHWA 2UZSA 2LKOA 2AEHA 2ROVA 3KY9A 1RRPB 4DXAB 1WI1A 1X1FA 2NBVA 5HE3A 3ZDTA 2D9XA 4HAXB 1XODA 2E2XA 2VSZA 2OTXA 4DX8A 1XX0A 3PP2A 1UNRA 2H7DA 1WG7A 4GPTB 4HDOA 1KI1B 3KSYA 2JP2A 5D3YA 5HE0A 1J19A 2DA0A 2J0MA 3PZDA 1V5MA 4HAYB 1XD4A 1ZM0A 5C6RA 5CLQB 1P5TA 3D8FA 2J0KA 4KVGB 2P0DA 1MIXA 1OY2A 1EAZA 2J0JA 2EJ8A 1MKEA 3KRXA 3TVVA 5DH9B 3IVFA 2CAYA 2Z0OA 2M14A 1DBHA 5I2SA 3RCPA 1Q67A 2MWNB 2X18A 1BTKA 4K2OA 2G35A 2K49A 4QJ3B 3A8QA 2Z13A 2IFSA 3U7DA 3KRWA 4MT7A 2DX1A 5GOWB 3QWMA 2MDXA 1H4RA 2W2XD 4ZRKA 1Y5OA 1WGUA 2DTCA 3NWAA 2R2YA 2ZPYA 2YT2A 2D9VA 4A6FB 4EJNA 3ULBA 1M7EA 2EMTA 4HATB 1FHXA 4NY0A 4CYEA 4WJ7A 4K17A 3PVLA 3A98B 5D3WA 2YVCA 2KUPA 3KZ1A 3ZVRA 1UNQA 3T06A 3P6AA 3PVWA 1M7RA 1KZGA 3U8ZA 3A8PA 4GOUA 2DHKA 3SYXA 4Y94A 3TW1A 2GCLA 2LYDA 3NW8A 3WA0A 2HE7A 5KQ1A 3BJIA 5D3VA 1DDMA 5D27A 4Z2MB 1FOEA 4EKUA 2ADZA 1DDVA 2KR0A 2LG1A 4OSNA 1BAKA 5IRSA 1UPRA 4KHBB 1GG3A 2MFQA 2KIGA 2K8EA 1AQCA 1ZYIA 4C0AA 1NTYA 2R0DA 4QJ5B 4ZRJA 2K00A 3FSSA 5C79A 2GJYA 5FI1A 1WVHA 1IRSA 2RGNB 5DHAB 3SV1A 4OT1A 5JHGA 3QBVB 2RNRB 1X05A 3HK0A 2ROZB 3FM8C 1FGYA 2NZ8B 1FB8A 1FGZA 2AL6A 2CY5A 2YS3A 1NI2A 1BWNA 1BTNA 4A6HA 1Y19B 4Z2NA 2GUMA 3ULCA 1ZVRA 1ZC3B 4A6FA 1DROA 3PG7A 2YRYA 3NWFA 1RJ2A 2DYQA 4CSQA 4WVFB 2D10A 2DX5A 2OQBA 4GZUA 2I5CA 2Q13A 4QJ4B 1H10A 4CHJA 2L2IA 3DXCA 1I2HA 2ELBA 2YSZA 1QC6A 1T77A 5LOPB 1UNPA 2BCJA 1LW3A 2ELAA 1XCGA 5KQ4A 4ZRIA 4K81A 4B6HA 1K5GB 4HAWB 1GC6A 1U5FA 4KHBA 2RUKB 3DXEA 2LULA 2N23A 2KGXB 2RVBB 5JHHA 5DHFB 1XKEA 2DKQA 4NSWA 2P0HA 4HAZB 1NU2A 4IAPA 1QQGA 1MI1A 4K2PA 2Z0PA 4TYZA 2M38A
chains in the Genus database with same CATH topology

4GOUA 3FVCA 3NWAA 3OHMB 2R2YA 3NWFA 4IFSA 3TO1A 3TVVA 3TW1A 2Z4DA 4CSQA 2GCLA 4D6WA 2YT2A 4OT1A 3NW8A 4PQ0A 2RRFA 4QJ4B 4KHBA 2ZKMX 5I2SA 2KUQA 4L1RA 4HSIA 4Z2MB 3HIEA 5LG4B 4DIXA 3GYOA 2KR0A 2Z14A 3A58A 4OSNA 4KHAA 4KHBB 5IRSA 2KIEA 2K49A 2KIGA 2K8EA 2Z59A 4IOYX 4QJ3B 4QXAB 4KHOA 1ZYIA 3NWDA 2Z13A 2FJUB 4QJ5B 5I2MA 4Z2NA 5M4YB 2GUMA 3GYPA 4GNKB 2GCJA 2NBVA 3FSSA 3U12A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2R2Y A;  2KR0 A;  5IRS A;  2Z4D A;  2NBV A;  2Z59 A; 
#chains in the Genus database with same CATH topology
 3WYF B;  2NMB A;  4IFS A;  2VKI A;  1W1H A;  2YS1 A;  4D6W A;  3B77 A;  1U29 A;  4PNK A;  3AU4 A;  1K5D B;  1B55 A;  1PFJ A;  2PZ1 A;  2DFK A;  1EGX A;  2YF0 A;  3HIE A;  3ODO A;  1PLS A;  3DCX A;  1MK9 B;  5LG4 B;  1FHO A;  1OQN A;  3HSA A;  2W2X C;  2I1K A;  2L1C A;  4CHM A;  5J3Q A;  1DYN A;  1V5P A;  2DKP A;  3D8D A;  5JP4 A;  1WJ1 A;  4YL8 A;  1GC7 A;  5M4Y B;  1MPH A;  3CXB B;  4TKN A;  1SGH A;  3TO1 A;  4MK0 A;  2W2W A;  2DN6 A;  3DXD A;  4L6E A;  2P0F A;  4XWX A;  2QKM A;  3BIN A;  3HW2 B;  2I5F A;  2EMS A;  4QXA B;  2Y7B A;  5I2M A;  3NSU A;  2DHJ A;  4HB4 B;  3MPX A;  3FVC A;  3OHM B;  1EF1 A;  1U2B A;  1U27 A;  1SHC A;  2ZKM X;  4HAV B;  4A5K A;  3CIK A;  3O96 A;  5FI0 A;  4HSI A;  2YS5 A;  1U5D A;  1ISN A;  2DLW A;  2J59 M;  4HHV A;  5C5B B;  1FAO A;  3VOQ A;  2XQN M;  4GN1 A;  5HE2 A;  5DIF B;  2D9Z A;  2FJU B;  4GXB A;  4GMX B;  2GCJ A;  4DX9 0;  3ML4 A;  4MY6 A;  3G9W A;  2YT0 A;  4PQ0 A;  2DHI A;  3F5R A;  1KZ7 A;  1OMW A;  4F7G A;  5LON B;  2P8V A;  3M1I B;  1I7A A;  1TXD A;  3VIA A;  3GYO A;  5L81 A;  4DBB A;  1MIZ B;  1UPQ A;  1W1D A;  3SUZ A;  2Y8F A;  2EC1 A;  1ZSQ A;  1UEF A;  1X1G A;  3PVU A;  2R09 A;  1X11 A;  1PMS A;  1V61 A;  2UZR A;  3UZT A;  3SO6 A;  1WGQ A;  4HB3 B;  2CY4 A;  5D3X A;  1X86 A;  2D4Q A;  4L1R A;  3D8E A;  1ZC4 B;  2COF A;  3OAN A;  4DIX A;  2IYB A;  1J0W A;  2COC A;  2VRW B;  2Z0Q A;  2CRF A;  1P3R A;  4KHO A;  3V5W A;  3AJ4 A;  2Y8G A;  3PSC A;  1W1G A;  4GNK B;  4WSF A;  5C16 A;  2D9Y A;  2K2U A;  1V5U A;  2Z4D A;  2D9W A;  5DI9 B;  1U5E A;  1V89 A;  5C5B A;  2RSG A;  3TCA A;  4D0N B;  3P7Z A;  2COA A;  1E5W A;  4HB2 B;  4BBK A;  3A58 A;  2H7E A;  4KHA A;  2Z59 A;  3TFM A;  2FJL A;  2K2J A;  4YON A;  1TJ6 A;  2I1J A;  1Z87 A;  1LB1 A;  2DYN A;  3ODX A;  5JLJ B;  4F7H A;  2KCJ A;  2UVM A;  3FEH A;  1AWE A;  2HTH B;  3ODW A;  3X23 A;  5KCV A;  4EMO A;  4F7U P;  5EFX A;  1V88 A;  2RLO A;  3QIJ A;  4IOY X;  4KAX B;  4A6K A;  2D2Q A;  1MAI A;  3HQC A;  5HE1 A;  3GYP A;  1N3H A;  3N7C A;  4HAU B;  1EVH A;  1NTV A;  2QKL A;  2LOZ A;  2RRF A;  3MDB C;  1XR0 B;  2COD A;  2KUQ A;  3AU5 A;  2MKR A;  4HDQ A;  2Z14 A;  5CLL B;  2KIE A;  3F0W A;  4GMV A;  5J3T A;  3NWD A;  1P6S A;  5J3Y A;  3LJU X;  3U12 A;  4HB0 B;  2V76 A;  2LOX A;  1MK7 B;  1DDW A;  3PEG A;  4H8S A;  3SNH A;  1TQZ A;  4P7I A;  2YT1 A;  2GS0 A;  2N0Y A;  1U5G A;  2D11 A;  1WJM A;  1FHW A;  2UZS A;  2LKO A;  2AEH A;  2ROV A;  3KY9 A;  1RRP B;  4DXA B;  1WI1 A;  1X1F A;  2NBV A;  5HE3 A;  3ZDT A;  2D9X A;  4HAX B;  1XOD A;  2E2X A;  2VSZ A;  2OTX A;  4DX8 A;  1XX0 A;  3PP2 A;  1UNR A;  2H7D A;  1WG7 A;  4GPT B;  4HDO A;  1KI1 B;  3KSY A;  2JP2 A;  5D3Y A;  5HE0 A;  1J19 A;  2DA0 A;  2J0M A;  3PZD A;  1V5M A;  4HAY B;  1XD4 A;  1ZM0 A;  5C6R A;  5CLQ B;  1P5T A;  3D8F A;  2J0K A;  4KVG B;  2P0D A;  1MIX A;  1OY2 A;  1EAZ A;  2J0J A;  2EJ8 A;  1MKE A;  3KRX A;  3TVV A;  5DH9 B;  3IVF A;  2CAY A;  2Z0O A;  2M14 A;  1DBH A;  5I2S A;  3RCP A;  1Q67 A;  2MWN B;  2X18 A;  1BTK A;  4K2O A;  2G35 A;  2K49 A;  4QJ3 B;  3A8Q A;  2Z13 A;  2IFS A;  3U7D A;  3KRW A;  4MT7 A;  2DX1 A;  5GOW B;  3QWM A;  2MDX A;  1H4R A;  2W2X D;  4ZRK A;  1Y5O A;  1WGU A;  2DTC A;  3NWA A;  2R2Y A;  2ZPY A;  2YT2 A;  2D9V A;  4A6F B;  4EJN A;  3ULB A;  1M7E A;  2EMT A;  4HAT B;  1FHX A;  4NY0 A;  4CYE A;  4WJ7 A;  4K17 A;  3PVL A;  3A98 B;  5D3W A;  2YVC A;  2KUP A;  3KZ1 A;  3ZVR A;  1UNQ A;  3T06 A;  3P6A A;  3PVW A;  1M7R A;  1KZG A;  3U8Z A;  3A8P A;  4GOU A;  2DHK A;  3SYX A;  4Y94 A;  3TW1 A;  2GCL A;  2LYD A;  3NW8 A;  3WA0 A;  2HE7 A;  5KQ1 A;  3BJI A;  5D3V A;  1DDM A;  5D27 A;  4Z2M B;  1FOE A;  4EKU A;  2ADZ A;  1DDV A;  2KR0 A;  2LG1 A;  4OSN A;  1BAK A;  5IRS A;  1UPR A;  4KHB B;  1GG3 A;  2MFQ A;  2KIG A;  2K8E A;  1AQC A;  1ZYI A;  4C0A A;  1NTY A;  2R0D A;  4QJ5 B;  4ZRJ A;  2K00 A;  3FSS A;  5C79 A;  2GJY A;  5FI1 A;  1WVH A;  1IRS A;  2RGN B;  5DHA B;  3SV1 A;  4OT1 A;  5JHG A;  3QBV B;  2RNR B;  1X05 A;  3HK0 A;  2ROZ B;  3FM8 C;  1FGY A;  2NZ8 B;  1FB8 A;  1FGZ A;  2AL6 A;  2CY5 A;  2YS3 A;  1NI2 A;  1BWN A;  1BTN A;  4A6H A;  1Y19 B;  4Z2N A;  2GUM A;  3ULC A;  1ZVR A;  1ZC3 B;  4A6F A;  1DRO A;  3PG7 A;  2YRY A;  3NWF A;  1RJ2 A;  2DYQ A;  4CSQ A;  4WVF B;  2D10 A;  2DX5 A;  2OQB A;  4GZU A;  2I5C A;  2Q13 A;  4QJ4 B;  1H10 A;  4CHJ A;  2L2I A;  3DXC A;  1I2H A;  2ELB A;  2YSZ A;  1QC6 A;  1T77 A;  5LOP B;  1UNP A;  2BCJ A;  1LW3 A;  2ELA A;  1XCG A;  5KQ4 A;  4ZRI A;  4K81 A;  4B6H A;  1K5G B;  4HAW B;  1GC6 A;  1U5F A;  4KHB A;  2RUK B;  3DXE A;  2LUL A;  2N23 A;  2KGX B;  2RVB B;  5JHH A;  5DHF B;  1XKE A;  2DKQ A;  4NSW A;  2P0H A;  4HAZ B;  1NU2 A;  4IAP A;  1QQG A;  1MI1 A;  4K2P A;  2Z0P A;  4TYZ A;  2M38 A; 
#chains in the Genus database with same CATH homology
 4GOU A;  3FVC A;  3NWA A;  3OHM B;  2R2Y A;  3NWF A;  4IFS A;  3TO1 A;  3TVV A;  3TW1 A;  2Z4D A;  4CSQ A;  2GCL A;  4D6W A;  2YT2 A;  4OT1 A;  3NW8 A;  4PQ0 A;  2RRF A;  4QJ4 B;  4KHB A;  2ZKM X;  5I2S A;  2KUQ A;  4L1R A;  4HSI A;  4Z2M B;  3HIE A;  5LG4 B;  4DIX A;  3GYO A;  2KR0 A;  2Z14 A;  3A58 A;  4OSN A;  4KHA A;  4KHB B;  5IRS A;  2KIE A;  2K49 A;  2KIG A;  2K8E A;  2Z59 A;  4IOY X;  4QJ3 B;  4QXA B;  4KHO A;  1ZYI A;  3NWD A;  2Z13 A;  2FJU B;  4QJ5 B;  5I2M A;  4Z2N A;  5M4Y B;  2GUM A;  3GYP A;  4GNK B;  2GCJ A;  2NBV A;  3FSS A;  3U12 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2Z59A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations