4KHBA

Structure of the spt16d pob3n heterodimer
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
116
structure length
113
Chain Sequence
KRFESYKRDNQLPPKVRDMGIVIDQKNNTIVLPIMGRPVPFHINTIKNASKSDEGEWSFLRINFLSPGQRKDDQPFEDASAHFVRSLTFRSTDGDRYAEIANQISNLKREAVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/replication
source organism Chaetomium thermophilum var. thermophilum
publication title Structural basis of histone H2A-H2B recognition by the essential chaperone FACT.
pubmed doi rcsb
molecule keywords Uncharacterized protein SPT16D
total genus 21
structure length 113
sequence length 116
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2013-04-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.210 Mainly Beta Roll PH-domain like PH-domain like 4khbA00
4KHBA
chains in the Genus database with same CATH superfamily
3PVLA 3TVVA 2J0MA 5IRSA 2CAYA 2DKQA 1U2BA 1LW3A 5GOWB 2Y7BA 3A58A 4MT7A 3OHMB 5HE2A 1U5FA 4KHBA 4DXAB 2H7EA 4KAXB 3U7DA 2CY5A 3T06A 1MKEA 5D3YA 3KRWA 1IRSA 4DIXA 2IYBA 2HTHB 3VOQA 2I1KA 2Z0OA 1LB1A 2N23A 1FGZA 1ZM0A 4GNKB 1AWEA 5KCVA 5DH9B 1V88A 1Y5OA 4L1RA 4QXAB 4NSWA 5DHAB 3DXEA 1U5DA 2UZSA 1BTKA 1NU2A 2P0DA 2D11A 2W2XD 2L1CA 5DI9B 3DXCA 1M7EA 2DLWA 2YVCA 1SHCA 2Z13A 3D8FA 5J3TA 1Z87A 2D9WA 2Q13A 3KSYA 5C79A 3CIKA 1X11A 2W2XC 5KQ1A 1TXDA 2YSZA 2LKOA 2K2JA 2CRFA 5JP4A 3TO1A 1PLSA 2KUPA 1Q67A 3D8DA 5FI0A 2R2YA 2D9ZA 2KR0A 4H8SA 1XCGA 2NMBA 1MAIA 3NWFA 4P7IA 5C5BA 4K2PA 2KGXB 2V76A 1PMSA 2DTCA 3DXDA 5CLQB 3SYXA 2D4QA 3U8ZA 2OTXA 5HE1A 4CSQA 3AJ4A 2OQBA 2Y8FA 4D0NB 1V5MA 2R09A 2EJ8A 1B55A 1T77A 2EMTA 1XX0A 2FJLA 3A8PA 2LOZA 1FHOA 2DHIA 1U29A 3HQCA 3MDBC 1M7RA 1FB8A 3ULCA 3NW8A 2VSZA 3LJUX 1XODA 1TJ6A 1DDMA 1W1GA 1P5TA 3G9WA 4HAZB 4HB4B 4EJNA 2PZ1A 3V5WA 3FM8C 4GMXB 4HB0B 2XQNM 4GN1A 2W2WA 3D8EA 4C0AA 1V89A 2D2QA 1MIZB 4A6FB 2Z59A 3M1IB 2K49A 4QJ3B 2DHJA 3SNHA 2GS0A 1U27A 1X05A 2J0JA 3AU4A 4WSFA 1J0WA 3BJIA 4QJ4B 1I7AA 5EFXA 2BCJA 3SUZA 1DYNA 1UPQA 3ODOA 3DCXA 2N0YA 2LYDA 2KIEA 4GXBA 2YS1A 2K2UA 3U12A 1KZGA 2GJYA 4CYEA 2DN6A 1NTVA 4A5KA 3KY9A 2EC1A 2DHKA 4EKUA 4KVGB 3PP2A 3QIJA 4HB3B 4L6EA 2ZKMX 4A6FA 3HSAA 1WI1A 4TKNA 4A6KA 1NTYA 4ZRKA 3PVWA 3ML4A 1OY2A 4ZRIA 3MPXA 1FOEA 1U5EA 1X1FA 2NZ8B 4YL8A 1EGXA 1K5GB 1H10A 5FI1A 2D10A 3KRXA 1OMWA 1GC6A 2MKRA 1K5DB 2QKLA 4NY0A 2P0FA 2NBVA 3PSCA 1I2HA 2EMSA 2I1JA 3X23A 1X1GA 2DYNA 2HE7A 4QJ5B 2GCJA 2JP2A 2K00A 1Y19B 1H4RA 1V61A 2FJUB 4PNKA 1DDWA 3P6AA 4MY6A 4EMOA 1PFJA 4GZUA 4HAVB 2UZRA 5D3XA 2AEHA 3IVFA 5C6RA 1U5GA 1UNQA 2GCLA 3HW2B 1UEFA 5JLJB 2R0DA 2COFA 2LULA 3CXBB 5D27A 3NSUA 4GPTB 1BTNA 4Z2MB 2E2XA 2LOXA 4WVFB 4DX90 5HE0A 5DIFB 3TCAA 2G35A 3VIAA 2J0KA 2MDXA 2YS5A 1FHXA 2ROVA 1GC7A 2RRFA 4GMVA 4XWXA 1WGQA 2Y8GA 4CHJA 4PQ0A 3QWMA 2YRYA 4ZRJA 2CY4A 2ZPYA 1BAKA 5KQ4A 2COCA 4F7UP 3N7CA 3PEGA 4IOYX 3NWAA 1NI2A 4K2OA 4A6HA 1ZC4B 3AU5A 1OQNA 4KHBB 1KZ7A 2RNRB 2YF0A 4WJ7A 2K8EA 2RLOA 2MWNB 5D3WA 2RGNB 2M14A 1RRPB 3OANA 1UNRA 1MI1A 5JHGA 4KHOA 1FAOA 4K17A 1J19A 1ISNA 5HE3A 1SGHA 4HDOA 2M38A 4HATB 2ELBA 3WA0A 2ROZB 1ZSQA 2LG1A 3RCPA 2H7DA 4HSIA 2D9XA 3O96A 3TW1A 5LONB 4Y94A 3SV1A 3QBVB 4BBKA 1UPRA 2GUMA 3A98B 1DDVA 1ZVRA 1FHWA 4IFSA 2QKMA 2P0HA 2X18A 2VRWB 5I2MA 5DHFB 5LOPB 2Z0QA 3GYPA 3P7ZA 5D3VA 4B6HA 1X86A 1TQZA 2DYQA 5JHHA 1ZYIA 2YT1A 4HHVA 2VKIA 3PZDA 1EF1A 2RUKB 5C5BB 2CODA 2J59M 4HAYB 3HIEA 2KCJA 2IFSA 1XR0B 2I5CA 2L2IA 2MFQA 5J3YA 1E5WA 1P6SA 1WJ1A 2DX1A 3F5RA 1EVHA 4TYZA 3SO6A 2DA0A 1WGUA 4F7HA 2Z0PA 4OT1A 2YT0A 5CLLB 1AQCA 2D9YA 1W1DA 3F0WA 2UVMA 4OSNA 4HAXB 2COAA 2RSGA 4K81A 3B77A 3A8QA 2YS3A 3UZTA 1QQGA 4Z2NA 1MK7B 5L81A 1V5UA 2AL6A 1W1HA 2RVBB 4HAWB 3ULBA 1ZC3B 5C16A 2KIGA 3ODWA 1WVHA 5LG4B 4D6WA 1DROA 1MIXA 2DKPA 1UNPA 1V5PA 2DFKA 1N3HA 1RJ2A 4DX8A 2Z4DA 3GYOA 2Z14A 3ODXA 3PG7A 2D9VA 1P3RA 1WJMA 4HAUB 4MK0A 1BWNA 1EAZA 5I2SA 3ZVRA 1DBHA 3PVUA 1QC6A 1FGYA 1XKEA 4HDQA 3NWDA 4F7GA 3FVCA 3WYFB 4DBBA 3TFMA 4IAPA 4KHAA 1MK9B 1WG7A 3ZDTA 4GOUA 5J3QA 4HB2B 3FEHA 2I5FA 1XD4A 4CHMA 3FSSA 5M4YB 2ADZA 2KUQA 3KZ1A 2P8VA 2ELAA 2YT2A 1GG3A 1MPHA 3BINA 1KI1B 3HK0A 4YONA 2DX5A
chains in the Genus database with same CATH topology
2RRFA 2Z13A 3TVVA 5LG4B 3U12A 4D6WA 5IRSA 3NW8A 3NWDA 4OSNA 2Z59A 4QJ3B 2K49A 4CSQA 1ZYIA 3A58A 4PQ0A 2GUMA 3FVCA 4KHOA 2Z4DA 3HIEA 4GNKB 3OHMB 3GYOA 2GCLA 4KHAA 2Z14A 3TO1A 4Z2NA 4IFSA 4GOUA 4L1RA 4QXAB 4QJ4B 2NBVA 4KHBA 2R2YA 5I2MA 4Z2MB 2KR0A 3FSSA 2FJUB 5M4YB 4IOYX 2KUQA 3NWAA 2ZKMX 3GYPA 3NWFA 5I2SA 4HSIA 4QJ5B 4OT1A 2YT2A 3TW1A 2GCJA 4KHBB 2KIEA 2KIGA 4DIXA 2K8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KHB A; 
#chains in the Genus database with same CATH topology
 3PVL A;  3TVV A;  2J0M A;  5IRS A;  2CAY A;  2DKQ A;  1U2B A;  1LW3 A;  5GOW B;  2Y7B A;  3A58 A;  4MT7 A;  3OHM B;  5HE2 A;  1U5F A;  4KHB A;  4DXA B;  2H7E A;  4KAX B;  3U7D A;  2CY5 A;  3T06 A;  1MKE A;  5D3Y A;  3KRW A;  1IRS A;  4DIX A;  2IYB A;  2HTH B;  3VOQ A;  2I1K A;  2Z0O A;  1LB1 A;  2N23 A;  1FGZ A;  1ZM0 A;  4GNK B;  1AWE A;  5KCV A;  5DH9 B;  1V88 A;  1Y5O A;  4L1R A;  4QXA B;  4NSW A;  5DHA B;  3DXE A;  1U5D A;  2UZS A;  1BTK A;  1NU2 A;  2P0D A;  2D11 A;  2W2X D;  2L1C A;  5DI9 B;  3DXC A;  1M7E A;  2DLW A;  2YVC A;  1SHC A;  2Z13 A;  3D8F A;  5J3T A;  1Z87 A;  2D9W A;  2Q13 A;  3KSY A;  5C79 A;  3CIK A;  1X11 A;  2W2X C;  5KQ1 A;  1TXD A;  2YSZ A;  2LKO A;  2K2J A;  2CRF A;  5JP4 A;  3TO1 A;  1PLS A;  2KUP A;  1Q67 A;  3D8D A;  5FI0 A;  2R2Y A;  2D9Z A;  2KR0 A;  4H8S A;  1XCG A;  2NMB A;  1MAI A;  3NWF A;  4P7I A;  5C5B A;  4K2P A;  2KGX B;  2V76 A;  1PMS A;  2DTC A;  3DXD A;  5CLQ B;  3SYX A;  2D4Q A;  3U8Z A;  2OTX A;  5HE1 A;  4CSQ A;  3AJ4 A;  2OQB A;  2Y8F A;  4D0N B;  1V5M A;  2R09 A;  2EJ8 A;  1B55 A;  1T77 A;  2EMT A;  1XX0 A;  2FJL A;  3A8P A;  2LOZ A;  1FHO A;  2DHI A;  1U29 A;  3HQC A;  3MDB C;  1M7R A;  1FB8 A;  3ULC A;  3NW8 A;  2VSZ A;  3LJU X;  1XOD A;  1TJ6 A;  1DDM A;  1W1G A;  1P5T A;  3G9W A;  4HAZ B;  4HB4 B;  4EJN A;  2PZ1 A;  3V5W A;  3FM8 C;  4GMX B;  4HB0 B;  2XQN M;  4GN1 A;  2W2W A;  3D8E A;  4C0A A;  1V89 A;  2D2Q A;  1MIZ B;  4A6F B;  2Z59 A;  3M1I B;  2K49 A;  4QJ3 B;  2DHJ A;  3SNH A;  2GS0 A;  1U27 A;  1X05 A;  2J0J A;  3AU4 A;  4WSF A;  1J0W A;  3BJI A;  4QJ4 B;  1I7A A;  5EFX A;  2BCJ A;  3SUZ A;  1DYN A;  1UPQ A;  3ODO A;  3DCX A;  2N0Y A;  2LYD A;  2KIE A;  4GXB A;  2YS1 A;  2K2U A;  3U12 A;  1KZG A;  2GJY A;  4CYE A;  2DN6 A;  1NTV A;  4A5K A;  3KY9 A;  2EC1 A;  2DHK A;  4EKU A;  4KVG B;  3PP2 A;  3QIJ A;  4HB3 B;  4L6E A;  2ZKM X;  4A6F A;  3HSA A;  1WI1 A;  4TKN A;  4A6K A;  1NTY A;  4ZRK A;  3PVW A;  3ML4 A;  1OY2 A;  4ZRI A;  3MPX A;  1FOE A;  1U5E A;  1X1F A;  2NZ8 B;  4YL8 A;  1EGX A;  1K5G B;  1H10 A;  5FI1 A;  2D10 A;  3KRX A;  1OMW A;  1GC6 A;  2MKR A;  1K5D B;  2QKL A;  4NY0 A;  2P0F A;  2NBV A;  3PSC A;  1I2H A;  2EMS A;  2I1J A;  3X23 A;  1X1G A;  2DYN A;  2HE7 A;  4QJ5 B;  2GCJ A;  2JP2 A;  2K00 A;  1Y19 B;  1H4R A;  1V61 A;  2FJU B;  4PNK A;  1DDW A;  3P6A A;  4MY6 A;  4EMO A;  1PFJ A;  4GZU A;  4HAV B;  2UZR A;  5D3X A;  2AEH A;  3IVF A;  5C6R A;  1U5G A;  1UNQ A;  2GCL A;  3HW2 B;  1UEF A;  5JLJ B;  2R0D A;  2COF A;  2LUL A;  3CXB B;  5D27 A;  3NSU A;  4GPT B;  1BTN A;  4Z2M B;  2E2X A;  2LOX A;  4WVF B;  4DX9 0;  5HE0 A;  5DIF B;  3TCA A;  2G35 A;  3VIA A;  2J0K A;  2MDX A;  2YS5 A;  1FHX A;  2ROV A;  1GC7 A;  2RRF A;  4GMV A;  4XWX A;  1WGQ A;  2Y8G A;  4CHJ A;  4PQ0 A;  3QWM A;  2YRY A;  4ZRJ A;  2CY4 A;  2ZPY A;  1BAK A;  5KQ4 A;  2COC A;  4F7U P;  3N7C A;  3PEG A;  4IOY X;  3NWA A;  1NI2 A;  4K2O A;  4A6H A;  1ZC4 B;  3AU5 A;  1OQN A;  4KHB B;  1KZ7 A;  2RNR B;  2YF0 A;  4WJ7 A;  2K8E A;  2RLO A;  2MWN B;  5D3W A;  2RGN B;  2M14 A;  1RRP B;  3OAN A;  1UNR A;  1MI1 A;  5JHG A;  4KHO A;  1FAO A;  4K17 A;  1J19 A;  1ISN A;  5HE3 A;  1SGH A;  4HDO A;  2M38 A;  4HAT B;  2ELB A;  3WA0 A;  2ROZ B;  1ZSQ A;  2LG1 A;  3RCP A;  2H7D A;  4HSI A;  2D9X A;  3O96 A;  3TW1 A;  5LON B;  4Y94 A;  3SV1 A;  3QBV B;  4BBK A;  1UPR A;  2GUM A;  3A98 B;  1DDV A;  1ZVR A;  1FHW A;  4IFS A;  2QKM A;  2P0H A;  2X18 A;  2VRW B;  5I2M A;  5DHF B;  5LOP B;  2Z0Q A;  3GYP A;  3P7Z A;  5D3V A;  4B6H A;  1X86 A;  1TQZ A;  2DYQ A;  5JHH A;  1ZYI A;  2YT1 A;  4HHV A;  2VKI A;  3PZD A;  1EF1 A;  2RUK B;  5C5B B;  2COD A;  2J59 M;  4HAY B;  3HIE A;  2KCJ A;  2IFS A;  1XR0 B;  2I5C A;  2L2I A;  2MFQ A;  5J3Y A;  1E5W A;  1P6S A;  1WJ1 A;  2DX1 A;  3F5R A;  1EVH A;  4TYZ A;  3SO6 A;  2DA0 A;  1WGU A;  4F7H A;  2Z0P A;  4OT1 A;  2YT0 A;  5CLL B;  1AQC A;  2D9Y A;  1W1D A;  3F0W A;  2UVM A;  4OSN A;  4HAX B;  2COA A;  2RSG A;  4K81 A;  3B77 A;  3A8Q A;  2YS3 A;  3UZT A;  1QQG A;  4Z2N A;  1MK7 B;  5L81 A;  1V5U A;  2AL6 A;  1W1H A;  2RVB B;  4HAW B;  3ULB A;  1ZC3 B;  5C16 A;  2KIG A;  3ODW A;  1WVH A;  5LG4 B;  4D6W A;  1DRO A;  1MIX A;  2DKP A;  1UNP A;  1V5P A;  2DFK A;  1N3H A;  1RJ2 A;  4DX8 A;  2Z4D A;  3GYO A;  2Z14 A;  3ODX A;  3PG7 A;  2D9V A;  1P3R A;  1WJM A;  4HAU B;  4MK0 A;  1BWN A;  1EAZ A;  5I2S A;  3ZVR A;  1DBH A;  3PVU A;  1QC6 A;  1FGY A;  1XKE A;  4HDQ A;  3NWD A;  4F7G A;  3FVC A;  3WYF B;  4DBB A;  3TFM A;  4IAP A;  4KHA A;  1MK9 B;  1WG7 A;  3ZDT A;  4GOU A;  5J3Q A;  4HB2 B;  3FEH A;  2I5F A;  1XD4 A;  4CHM A;  3FSS A;  5M4Y B;  2ADZ A;  2KUQ A;  3KZ1 A;  2P8V A;  2ELA A;  2YT2 A;  1GG3 A;  1MPH A;  3BIN A;  1KI1 B;  3HK0 A;  4YON A;  2DX5 A; 
#chains in the Genus database with same CATH homology
 2RRF A;  2Z13 A;  3TVV A;  5LG4 B;  3U12 A;  4D6W A;  5IRS A;  3NW8 A;  3NWD A;  4OSN A;  2Z59 A;  4QJ3 B;  2K49 A;  4CSQ A;  1ZYI A;  3A58 A;  4PQ0 A;  2GUM A;  3FVC A;  4KHO A;  2Z4D A;  3HIE A;  4GNK B;  3OHM B;  3GYO A;  2GCL A;  4KHA A;  2Z14 A;  3TO1 A;  4Z2N A;  4IFS A;  4GOU A;  4L1R A;  4QXA B;  4QJ4 B;  2NBV A;  4KHB A;  2R2Y A;  5I2M A;  4Z2M B;  2KR0 A;  3FSS A;  2FJU B;  5M4Y B;  4IOY X;  2KUQ A;  3NWA A;  2ZKM X;  3GYP A;  3NWF A;  5I2S A;  4HSI A;  4QJ5 B;  4OT1 A;  2YT2 A;  3TW1 A;  2GCJ A;  4KHB B;  2KIE A;  2KIG A;  4DIX A;  2K8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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