4QXAB

Crystal structure of the rab9a-rutbc2 rbd complex
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
171
structure length
147
Chain Sequence
ATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVATDYVFRIIYP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport/protein binding
source organism Mus musculus
publication title Crystal Structure of the Rab9A-RUTBC2 RBD Complex Reveals the Molecular Basis for the Binding Specificity of Rab9A with RUTBC2
doi rcsb
molecule keywords Ras-related protein Rab-9A
total genus 30
structure length 147
sequence length 171
ec nomenclature
pdb deposition date 2014-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF12068 PH_RBD Rab-binding domain (RBD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.230 Mainly Beta Roll PH-domain like PH-domain like 4qxaB00
4QXAB
chains in the Genus database with same CATH superfamily
5DI9B 2W2WA 3VOQA 3TO1A 2R0DA 3M1IB 3NW8A 4YONA 3KRXA 2DKQA 2KUPA 4MK0A 5HE1A 4NSWA 1DYNA 2FJUB 1DDMA 3PP2A 2FJLA 4K2OA 2YVCA 1XR0B 1Y5OA 1MKEA 1FGZA 4QJ5B 2RLOA 3SO6A 5M4YB 1FAOA 1X11A 3PZDA 1KZ7A 1GC6A 1N3HA 5KQ4A 1WJMA 2JP2A 2Z4DA 4L1RA 1V61A 3NWDA 1OMWA 3DCXA 2N23A 3DXCA 1V5PA 2ADZA 3ZVRA 1ZM0A 4EKUA 4QJ4B 5DHAB 1GC7A 5D3WA 2LOZA 3WYFB 1TXDA 1MK9B 4HDQA 4A6FB 3BJIA 4KHAA 2Z14A 3SNHA 4TKNA 2HE7A 4QJ3B 2Z0QA 1IRSA 4L6EA 1H10A 3B77A 1I2HA 3BINA 3OHMB 5C5BA 1FHXA 1U5FA 2H7EA 2YS1A 5DIFB 1XKEA 2UVMA 1V89A 2D11A 2L1CA 3T06A 4Z2MB 1P6SA 3TW1A 3CIKA 2YT1A 2ELAA 2P8VA 1W1GA 1XX0A 4QXAB 2KGXB 4HB3B 2YRYA 5HE3A 2COCA 1J19A 1X86A 4ZRIA 2COAA 1AQCA 5D3XA 1H4RA 2K2UA 2KUQA 2Z0PA 5I2SA 2RSGA 2VKIA 1UPQA 2AL6A 1KI1B 4IOYX 2HTHB 4D0NB 1WGQA 2IYBA 4K2PA 2M38A 2KR0A 3TCAA 2EC1A 1NU2A 1FGYA 2DKPA 3ODWA 4DIXA 3F0WA 1U5GA 2DHKA 2DHIA 2K00A 1NTYA 1SGHA 1U2BA 1EAZA 2OQBA 2RVBB 3N7CA 1M7RA 2P0DA 4HSIA 2ROVA 2CAYA 4BBKA 3OANA 2CY5A 4B6HA 4F7UP 2D9XA 2Q13A 1ZC4B 1W1DA 5D27A 3KZ1A 4K81A 4P7IA 2D10A 1MIXA 5GOWB 1U5DA 1UEFA 2KIEA 5KQ1A 4HAVB 3PVUA 3PG7A 2DYNA 2GCJA 2DX5A 1BAKA 4KHBB 2Y8GA 2LOXA 2ELBA 2GUMA 2UZSA 4IFSA 1DDVA 2L2IA 1FB8A 3LJUX 2NZ8B 4GMXB 5HE0A 1LW3A 1PLSA 2K8EA 5JHHA 2EMSA 1P3RA 4HB4B 1I7AA 3HSAA 4HB2B 2LYDA 4KHBA 5FI1A 2GS0A 2J0KA 5JP4A 4CSQA 3SYXA 3ULCA 4YL8A 1RJ2A 3SV1A 2DTCA 2V76A 4Z2NA 1WJ1A 5C5BB 2YT2A 2I1JA 4DX90 2UZRA 2BCJA 1X1GA 2Y8FA 1MK7B 1MPHA 4F7GA 3FM8C 2I1KA 1J0WA 1EF1A 1M7EA 3O96A 3GYPA 4KVGB 1B55A 3MDBC 4K17A 3ULBA 3G9WA 1T77A 3ML4A 5CLQB 2D9YA 4GOUA 1BTNA 1Q67A 1WI1A 2R2YA 5J3TA 5DH9B 2VRWB 2OTXA 4TYZA 2QKMA 5JLJB 2LULA 5D3YA 4CHMA 3D8FA 3AU4A 2DLWA 3A58A 3PSCA 2J0MA 3AU5A 4XWXA 4EMOA 4WSFA 1XCGA 1W1HA 1MIZB 3PVLA 5CLLB 2MFQA 2H7DA 1OQNA 2CY4A 4WJ7A 1QC6A 1U29A 3PEGA 3A8PA 3RCPA 1AWEA 3A8QA 3GYOA 1WVHA 2RUKB 2RGNB 5HE2A 2P0FA 1MI1A 2LKOA 2I5CA 3TFMA 2IFSA 3V5WA 1K5GB 2ZKMX 4A6HA 2DN6A 2MWNB 2W2XC 1OY2A 1XD4A 2LG1A 3U12A 4A5KA 1QQGA 3TVVA 2YF0A 1Y19B 5LG4B 2ROZB 2Z0OA 4KAXB 1BWNA 4HB0B 2Z13A 3U8ZA 1FHOA 5I2MA 5C16A 2CRFA 2G35A 4PNKA 4PQ0A 2DA0A 2W2XD 3F5RA 1GG3A 3ODXA 2KIGA 3ODOA 4WVFB 4MY6A 3FSSA 3A98B 1PMSA 1Z87A 4ZRJA 5J3YA 1U27A 2Y7BA 3HW2B 4HAZB 2GCLA 4ZRKA 3DXDA 3CXBB 2QKLA 4D6WA 1ZSQA 2MKRA 2XQNM 3QWMA 4EJNA 2DYQA 4IAPA 1DBHA 1TJ6A 1V5UA 2K49A 3KRWA 1EGXA 2J59M 2PZ1A 3SUZA 3NSUA 4A6KA 3PVWA 1UNQA 2N0YA 5EFXA 4GPTB 4CHJA 1K5DB 2KCJA 2EMTA 4HAYB 3D8EA 1LB1A 1RRPB 2NMBA 4HAXB 5C6RA 3D8DA 2X18A 4GZUA 1V88A 1NTVA 2GJYA 5LONB 4NY0A 4DX8A 5FI0A 4H8SA 3VIAA 3QBVB 4HAUB 4GN1A 2R09A 4HAWB 1MAIA 4C0AA 2ZPYA 4F7HA 2YT0A 1U5EA 2M14A 1SHCA 5KCVA 2D9WA 2YS3A 1P5TA 4DXAB 2DX1A 1UPRA 3NWFA 3FEHA 5C79A 5L81A 1X05A 2D4QA 4GXBA 3WA0A 1ZYIA 3UZTA 1KZGA 2RNRB 3FVCA 4OT1A 4A6FA 1PFJA 2DFKA 2NBVA 3P7ZA 4KHOA 4Y94A 2AEHA 2COFA 2EJ8A 1DROA 3P6AA 1FHWA 2D9VA 1E5WA 3HIEA 3NWAA 1V5MA 1UNPA 3MPXA 1BTKA 1ZVRA 4HATB 3HQCA 2CODA 4HHVA 3U7DA 1EVHA 2VSZA 2E2XA 5JHGA 1ISNA 3KY9A 1WG7A 4MT7A 4OSNA 1XODA 2YS5A 5DHFB 5J3QA 1NI2A 3ZDTA 1FOEA 3AJ4A 3X23A 1WGUA 2D2QA 4DBBA 4HDOA 1X1FA 5D3VA 2RRFA 2I5FA 2D9ZA 3QIJA 3KSYA 2J0JA 2MDXA 5LOPB 3IVFA 2DHJA 4GNKB 3DXEA 5IRSA 3HK0A 2Z59A 1DDWA 2YSZA 1ZC3B 2P0HA 1TQZA 2K2JA 4CYEA 4GMVA 1UNRA
chains in the Genus database with same CATH topology
4PQ0A 3TO1A 2K8EA 3NWFA 3NW8A 4QJ3B 2Z4DA 2KIGA 3A58A 2ZKMX 4KHAA 3GYPA 4L1RA 2KIEA 4DIXA 3FSSA 4KHBA 2FJUB 1ZYIA 3OHMB 2RRFA 3NWDA 2KUQA 2GCLA 4CSQA 3FVCA 4OT1A 4QXAB 4D6WA 5I2SA 3U12A 2GCJA 2NBVA 4GOUA 4IOYX 3TVVA 4GNKB 4OSNA 4KHOA 4QJ5B 5IRSA 2Z59A 4HSIA 4QJ4B 4Z2NA 4KHBB 3GYOA 5LG4B 2R2YA 4IFSA 2GUMA 4Z2MB 3TW1A 2YT2A 2Z13A 3HIEA 3NWAA 5M4YB 2K49A 5I2MA 2KR0A 2Z14A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QXA B; 
#chains in the Genus database with same CATH topology
 5DI9 B;  2W2W A;  3VOQ A;  3TO1 A;  2R0D A;  3M1I B;  3NW8 A;  4YON A;  3KRX A;  2DKQ A;  2KUP A;  4MK0 A;  5HE1 A;  4NSW A;  1DYN A;  2FJU B;  1DDM A;  3PP2 A;  2FJL A;  4K2O A;  2YVC A;  1XR0 B;  1Y5O A;  1MKE A;  1FGZ A;  4QJ5 B;  2RLO A;  3SO6 A;  5M4Y B;  1FAO A;  1X11 A;  3PZD A;  1KZ7 A;  1GC6 A;  1N3H A;  5KQ4 A;  1WJM A;  2JP2 A;  2Z4D A;  4L1R A;  1V61 A;  3NWD A;  1OMW A;  3DCX A;  2N23 A;  3DXC A;  1V5P A;  2ADZ A;  3ZVR A;  1ZM0 A;  4EKU A;  4QJ4 B;  5DHA B;  1GC7 A;  5D3W A;  2LOZ A;  3WYF B;  1TXD A;  1MK9 B;  4HDQ A;  4A6F B;  3BJI A;  4KHA A;  2Z14 A;  3SNH A;  4TKN A;  2HE7 A;  4QJ3 B;  2Z0Q A;  1IRS A;  4L6E A;  1H10 A;  3B77 A;  1I2H A;  3BIN A;  3OHM B;  5C5B A;  1FHX A;  1U5F A;  2H7E A;  2YS1 A;  5DIF B;  1XKE A;  2UVM A;  1V89 A;  2D11 A;  2L1C A;  3T06 A;  4Z2M B;  1P6S A;  3TW1 A;  3CIK A;  2YT1 A;  2ELA A;  2P8V A;  1W1G A;  1XX0 A;  4QXA B;  2KGX B;  4HB3 B;  2YRY A;  5HE3 A;  2COC A;  1J19 A;  1X86 A;  4ZRI A;  2COA A;  1AQC A;  5D3X A;  1H4R A;  2K2U A;  2KUQ A;  2Z0P A;  5I2S A;  2RSG A;  2VKI A;  1UPQ A;  2AL6 A;  1KI1 B;  4IOY X;  2HTH B;  4D0N B;  1WGQ A;  2IYB A;  4K2P A;  2M38 A;  2KR0 A;  3TCA A;  2EC1 A;  1NU2 A;  1FGY A;  2DKP A;  3ODW A;  4DIX A;  3F0W A;  1U5G A;  2DHK A;  2DHI A;  2K00 A;  1NTY A;  1SGH A;  1U2B A;  1EAZ A;  2OQB A;  2RVB B;  3N7C A;  1M7R A;  2P0D A;  4HSI A;  2ROV A;  2CAY A;  4BBK A;  3OAN A;  2CY5 A;  4B6H A;  4F7U P;  2D9X A;  2Q13 A;  1ZC4 B;  1W1D A;  5D27 A;  3KZ1 A;  4K81 A;  4P7I A;  2D10 A;  1MIX A;  5GOW B;  1U5D A;  1UEF A;  2KIE A;  5KQ1 A;  4HAV B;  3PVU A;  3PG7 A;  2DYN A;  2GCJ A;  2DX5 A;  1BAK A;  4KHB B;  2Y8G A;  2LOX A;  2ELB A;  2GUM A;  2UZS A;  4IFS A;  1DDV A;  2L2I A;  1FB8 A;  3LJU X;  2NZ8 B;  4GMX B;  5HE0 A;  1LW3 A;  1PLS A;  2K8E A;  5JHH A;  2EMS A;  1P3R A;  4HB4 B;  1I7A A;  3HSA A;  4HB2 B;  2LYD A;  4KHB A;  5FI1 A;  2GS0 A;  2J0K A;  5JP4 A;  4CSQ A;  3SYX A;  3ULC A;  4YL8 A;  1RJ2 A;  3SV1 A;  2DTC A;  2V76 A;  4Z2N A;  1WJ1 A;  5C5B B;  2YT2 A;  2I1J A;  4DX9 0;  2UZR A;  2BCJ A;  1X1G A;  2Y8F A;  1MK7 B;  1MPH A;  4F7G A;  3FM8 C;  2I1K A;  1J0W A;  1EF1 A;  1M7E A;  3O96 A;  3GYP A;  4KVG B;  1B55 A;  3MDB C;  4K17 A;  3ULB A;  3G9W A;  1T77 A;  3ML4 A;  5CLQ B;  2D9Y A;  4GOU A;  1BTN A;  1Q67 A;  1WI1 A;  2R2Y A;  5J3T A;  5DH9 B;  2VRW B;  2OTX A;  4TYZ A;  2QKM A;  5JLJ B;  2LUL A;  5D3Y A;  4CHM A;  3D8F A;  3AU4 A;  2DLW A;  3A58 A;  3PSC A;  2J0M A;  3AU5 A;  4XWX A;  4EMO A;  4WSF A;  1XCG A;  1W1H A;  1MIZ B;  3PVL A;  5CLL B;  2MFQ A;  2H7D A;  1OQN A;  2CY4 A;  4WJ7 A;  1QC6 A;  1U29 A;  3PEG A;  3A8P A;  3RCP A;  1AWE A;  3A8Q A;  3GYO A;  1WVH A;  2RUK B;  2RGN B;  5HE2 A;  2P0F A;  1MI1 A;  2LKO A;  2I5C A;  3TFM A;  2IFS A;  3V5W A;  1K5G B;  2ZKM X;  4A6H A;  2DN6 A;  2MWN B;  2W2X C;  1OY2 A;  1XD4 A;  2LG1 A;  3U12 A;  4A5K A;  1QQG A;  3TVV A;  2YF0 A;  1Y19 B;  5LG4 B;  2ROZ B;  2Z0O A;  4KAX B;  1BWN A;  4HB0 B;  2Z13 A;  3U8Z A;  1FHO A;  5I2M A;  5C16 A;  2CRF A;  2G35 A;  4PNK A;  4PQ0 A;  2DA0 A;  2W2X D;  3F5R A;  1GG3 A;  3ODX A;  2KIG A;  3ODO A;  4WVF B;  4MY6 A;  3FSS A;  3A98 B;  1PMS A;  1Z87 A;  4ZRJ A;  5J3Y A;  1U27 A;  2Y7B A;  3HW2 B;  4HAZ B;  2GCL A;  4ZRK A;  3DXD A;  3CXB B;  2QKL A;  4D6W A;  1ZSQ A;  2MKR A;  2XQN M;  3QWM A;  4EJN A;  2DYQ A;  4IAP A;  1DBH A;  1TJ6 A;  1V5U A;  2K49 A;  3KRW A;  1EGX A;  2J59 M;  2PZ1 A;  3SUZ A;  3NSU A;  4A6K A;  3PVW A;  1UNQ A;  2N0Y A;  5EFX A;  4GPT B;  4CHJ A;  1K5D B;  2KCJ A;  2EMT A;  4HAY B;  3D8E A;  1LB1 A;  1RRP B;  2NMB A;  4HAX B;  5C6R A;  3D8D A;  2X18 A;  4GZU A;  1V88 A;  1NTV A;  2GJY A;  5LON B;  4NY0 A;  4DX8 A;  5FI0 A;  4H8S A;  3VIA A;  3QBV B;  4HAU B;  4GN1 A;  2R09 A;  4HAW B;  1MAI A;  4C0A A;  2ZPY A;  4F7H A;  2YT0 A;  1U5E A;  2M14 A;  1SHC A;  5KCV A;  2D9W A;  2YS3 A;  1P5T A;  4DXA B;  2DX1 A;  1UPR A;  3NWF A;  3FEH A;  5C79 A;  5L81 A;  1X05 A;  2D4Q A;  4GXB A;  3WA0 A;  1ZYI A;  3UZT A;  1KZG A;  2RNR B;  3FVC A;  4OT1 A;  4A6F A;  1PFJ A;  2DFK A;  2NBV A;  3P7Z A;  4KHO A;  4Y94 A;  2AEH A;  2COF A;  2EJ8 A;  1DRO A;  3P6A A;  1FHW A;  2D9V A;  1E5W A;  3HIE A;  3NWA A;  1V5M A;  1UNP A;  3MPX A;  1BTK A;  1ZVR A;  4HAT B;  3HQC A;  2COD A;  4HHV A;  3U7D A;  1EVH A;  2VSZ A;  2E2X A;  5JHG A;  1ISN A;  3KY9 A;  1WG7 A;  4MT7 A;  4OSN A;  1XOD A;  2YS5 A;  5DHF B;  5J3Q A;  1NI2 A;  3ZDT A;  1FOE A;  3AJ4 A;  3X23 A;  1WGU A;  2D2Q A;  4DBB A;  4HDO A;  1X1F A;  5D3V A;  2RRF A;  2I5F A;  2D9Z A;  3QIJ A;  3KSY A;  2J0J A;  2MDX A;  5LOP B;  3IVF A;  2DHJ A;  4GNK B;  3DXE A;  5IRS A;  3HK0 A;  2Z59 A;  1DDW A;  2YSZ A;  1ZC3 B;  2P0H A;  1TQZ A;  2K2J A;  4CYE A;  4GMV A;  1UNR A; 
#chains in the Genus database with same CATH homology
 4PQ0 A;  3TO1 A;  2K8E A;  3NWF A;  3NW8 A;  4QJ3 B;  2Z4D A;  2KIG A;  3A58 A;  2ZKM X;  4KHA A;  3GYP A;  4L1R A;  2KIE A;  4DIX A;  3FSS A;  4KHB A;  2FJU B;  1ZYI A;  3OHM B;  2RRF A;  3NWD A;  2KUQ A;  2GCL A;  4CSQ A;  3FVC A;  4OT1 A;  4QXA B;  4D6W A;  5I2S A;  3U12 A;  2GCJ A;  2NBV A;  4GOU A;  4IOY X;  3TVV A;  4GNK B;  4OSN A;  4KHO A;  4QJ5 B;  5IRS A;  2Z59 A;  4HSI A;  4QJ4 B;  4Z2N A;  4KHB B;  3GYO A;  5LG4 B;  2R2Y A;  4IFS A;  2GUM A;  4Z2M B;  3TW1 A;  2YT2 A;  2Z13 A;  3HIE A;  3NWA A;  5M4Y B;  2K49 A;  5I2M A;  2KR0 A;  2Z14 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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