The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
171
|
structure length |
147
|
Chain Sequence |
ATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVATDYVFRIIYP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of the Rab9A-RUTBC2 RBD Complex Reveals the Molecular Basis for the Binding Specificity of Rab9A with RUTBC2
doi rcsb |
| molecule tags |
Protein transport/protein binding
|
| source organism |
Mus musculus
|
| molecule keywords |
Ras-related protein Rab-9A
|
| total genus |
30
|
| structure length |
147
|
| sequence length |
171
|
| ec nomenclature | |
| pdb deposition date | 2014-07-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF12068 | PH_RBD | Rab-binding domain (RBD) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | PH-domain like | PH-domain like |
#chains in the Genus database with same CATH superfamily 4QXA B; #chains in the Genus database with same CATH topology 1MI1 A; 2EMT A; 1V89 A; 1DDV A; 5HE2 A; 1P6S A; 1X11 A; 4QJ4 B; 2YVC A; 2QKL A; 4KHB B; 1V5U A; 3MPX A; 3ODO A; 3SO6 A; 4MT7 A; 3TCA A; 2DKP A; 1WG7 A; 2N0Y A; 2I1J A; 1BAK A; 4KHA A; 1FHO A; 2XQN M; 2YSZ A; 4ZRK A; 4A6K A; 1PFJ A; 1OY2 A; 3TO1 A; 2H7E A; 2DN6 A; 3KRW A; 2HTH B; 5KQ4 A; 2Y8G A; 4A6F A; 3D8F A; 5IRS A; 3PVW A; 1U27 A; 3HW2 B; 1DBH A; 1NU2 A; 3SNH A; 2Z59 A; 4DXA B; 3U7D A; 2I5C A; 1MIX A; 1FOE A; 1UNQ A; 2Z0O A; 3VIA A; 5CLQ B; 2I5F A; 3QWM A; 2Y7B A; 3BIN A; 3P7Z A; 4MY6 A; 2MFQ A; 2ELA A; 2D9W A; 1I7A A; 3KZ1 A; 1XD4 A; 3NWA A; 3FVC A; 4QJ3 B; 2X18 A; 1DDM A; 2RUK B; 3N7C A; 4K17 A; 1E5W A; 4F7G A; 3F0W A; 4HB0 B; 2DLW A; 4HHV A; 1Q67 A; 3X23 A; 1FHX A; 2LOX A; 5DHF B; 3CIK A; 4OT1 A; 2GUM A; 3D8D A; 3U12 A; 4A6F B; 5D3Y A; 2DYN A; 2RNR B; 4HB3 B; 2D2Q A; 2VRW B; 2ZKM X; 1FHW A; 1WGQ A; 1MK9 B; 3PG7 A; 2YT1 A; 3CXB B; 2YT0 A; 1OQN A; 4CSQ A; 5L81 A; 2J59 M; 4GN1 A; 1BTN A; 3PVU A; 5LOP B; 2FJU B; 4GXB A; 5JLJ B; 2EMS A; 1EAZ A; 5FI0 A; 3HQC A; 1V61 A; 3ZVR A; 3QBV B; 2DYQ A; 4HAV B; 3SUZ A; 1FAO A; 2P0D A; 4HB2 B; 2NZ8 B; 1MKE A; 2K49 A; 2V76 A; 1DDW A; 3M1I B; 2R09 A; 3TW1 A; 2ROZ B; 3SYX A; 3U8Z A; 1DRO A; 4QXA B; 1T77 A; 3A8Q A; 1NI2 A; 5DH9 B; 2CRF A; 2VSZ A; 3ODW A; 4CYE A; 1KI1 B; 2DKQ A; 2KIG A; 1B55 A; 1U5F A; 4B6H A; 1KZG A; 2GCL A; 4F7U P; 1K5G B; 5GOW B; 1AWE A; 3OAN A; 1MK7 B; 2UVM A; 1MAI A; 5C5B A; 4DX8 A; 2RRF A; 2UZS A; 1FB8 A; 2K2U A; 5KCV A; 4Z2N A; 5JHG A; 3T06 A; 2J0M A; 3MDB C; 4L6E A; 4DX9 0; 4CHM A; 2CY4 A; 1UNP A; 2QKM A; 2J0J A; 3VOQ A; 2M14 A; 2FJL A; 1K5D B; 3G9W A; 4HAU B; 2YS1 A; 2GCJ A; 3KRX A; 1BTK A; 2ZPY A; 1U29 A; 2COA A; 2I1K A; 1P3R A; 2RVB B; 1MPH A; 4A5K A; 1ZSQ A; 3FEH A; 3SV1 A; 1XKE A; 2P0F A; 3HIE A; 3DXC A; 3GYP A; 2YF0 A; 5EFX A; 5FI1 A; 5J3T A; 5I2M A; 2DHJ A; 1NTV A; 1N3H A; 3NWF A; 1LB1 A; 5C5B B; 1MIZ B; 2W2X C; 3QIJ A; 1X86 A; 2ADZ A; 4XWX A; 2Z0P A; 2OQB A; 1ZYI A; 2H7D A; 5HE3 A; 2D9Z A; 5D3W A; 2RGN B; 2BCJ A; 3PP2 A; 3AU5 A; 2KCJ A; 2DA0 A; 4Y94 A; 5M4Y B; 4WJ7 A; 1QC6 A; 1XX0 A; 3D8E A; 5DIF B; 4C0A A; 2L1C A; 4NSW A; 2DX1 A; 2DHI A; 2KR0 A; 2EJ8 A; 2YT2 A; 5LG4 B; 2CAY A; 4EKU A; 3NW8 A; 2Y8F A; 5HE0 A; 2D11 A; 2NBV A; 4IAP A; 4KAX B; 2K2J A; 2N23 A; 2COD A; 2MDX A; 1DYN A; 1RJ2 A; 5C79 A; 2YS3 A; 3DXE A; 1XOD A; 3NSU A; 1NTY A; 1U5G A; 3PSC A; 3KY9 A; 1W1G A; 1GC7 A; 2Z0Q A; 1H4R A; 4ZRI A; 2LYD A; 2AEH A; 1WJ1 A; 5KQ1 A; 1IRS A; 2ELB A; 1X1F A; 4PQ0 A; 4WSF A; 3ULB A; 1KZ7 A; 1X05 A; 1M7E A; 2DX5 A; 2COF A; 2PZ1 A; 3A8P A; 4F7H A; 2LOZ A; 4K2O A; 5LON B; 3UZT A; 2LKO A; 2KUQ A; 4IOY X; 5HE1 A; 2D10 A; 4HB4 B; 4L1R A; 3DXD A; 4NY0 A; 3BJI A; 2RLO A; 1V88 A; 2DFK A; 2P0H A; 1UEF A; 2E2X A; 4OSN A; 1I2H A; 4K2P A; 3AJ4 A; 3ML4 A; 2AL6 A; 2Z14 A; 1Z87 A; 4YL8 A; 1LW3 A; 5J3Q A; 2R2Y A; 1TXD A; 3PZD A; 1PMS A; 4HAT B; 5I2S A; 1UPR A; 1TJ6 A; 4D0N B; 4IFS A; 1J19 A; 1RRP B; 3A98 B; 3DCX A; 3P6A A; 5J3Y A; 5JHH A; 5DI9 B; 2MWN B; 1AQC A; 1H10 A; 2Z13 A; 2LUL A; 1ZC4 B; 3ODX A; 3HSA A; 3LJU X; 4DBB A; 4GPT B; 3F5R A; 1UPQ A; 3FM8 C; 4EJN A; 3PVL A; 1EF1 A; 2KIE A; 2G35 A; 1X1G A; 3WA0 A; 3O96 A; 1PLS A; 4MK0 A; 3IVF A; 4HDO A; 4QJ5 B; 4HDQ A; 4HAY B; 5C16 A; 4PNK A; 2IYB A; 2P8V A; 3WYF B; 2GJY A; 1GG3 A; 4YON A; 3V5W A; 1XR0 B; 5CLL B; 4DIX A; 2DTC A; 4CHJ A; 1GC6 A; 1XCG A; 4HAW B; 3RCP A; 2W2W A; 2K8E A; 2J0K A; 4EMO A; 1Y19 B; 1V5M A; 1WI1 A; 2LG1 A; 5DHA B; 4P7I A; 2ROV A; 4KVG B; 2D9X A; 2L2I A; 2GS0 A; 1QQG A; 3ULC A; 2NMB A; 1J0W A; 4Z2M B; 4ZRJ A; 2MKR A; 2IFS A; 3HK0 A; 4HSI A; 4HAZ B; 1FGY A; 3TFM A; 3OHM B; 5D27 A; 1ZVR A; 4TKN A; 2CY5 A; 4D6W A; 1P5T A; 1WGU A; 1ISN A; 1M7R A; 1U5E A; 2D9Y A; 2COC A; 2YRY A; 1FGZ A; 2HE7 A; 2M38 A; 2EC1 A; 4H8S A; 1UNR A; 4TYZ A; 2VKI A; 2R0D A; 3AU4 A; 2DHK A; 4KHO A; 5D3X A; 4GMX B; 2KGX B; 3FSS A; 3GYO A; 3TVV A; 4HAX B; 2YS5 A; 4GZU A; 4WVF B; 4K81 A; 2RSG A; 1W1D A; 3NWD A; 4KHB A; 1ZC3 B; 1OMW A; 3A58 A; 1WJM A; 5D3V A; 3ZDT A; 1W1H A; 2UZR A; 2D4Q A; 2KUP A; 4GNK B; 4BBK A; 5C6R A; 2OTX A; 1SHC A; 4GMV A; 3B77 A; 1EGX A; 2Q13 A; 2Z4D A; 4A6H A; 1Y5O A; 1U2B A; 3PEG A; 1ZM0 A; 1V5P A; 2JP2 A; 1U5D A; 3KSY A; 1EVH A; 5JP4 A; 2W2X D; 1BWN A; 1SGH A; 2K00 A; 2D9V A; 1WVH A; 1TQZ A; 4GOU A; #chains in the Genus database with same CATH homology 5M4Y B; 5I2M A; 3A58 A; 4D6W A; 2Z13 A; 2ZKM X; 3NWF A; 3TO1 A; 2GCJ A; 2KIG A; 4Z2M B; 4DIX A; 2KR0 A; 4PQ0 A; 4GNK B; 5IRS A; 2YT2 A; 4HSI A; 5LG4 B; 4OSN A; 2K49 A; 2GCL A; 2Z59 A; 3NW8 A; 2KIE A; 2NBV A; 4KHO A; 2K8E A; 4QJ4 B; 2Z14 A; 4KHB B; 4CSQ A; 3OHM B; 2Z4D A; 4L1R A; 1ZYI A; 3FSS A; 3GYO A; 3TW1 A; 3TVV A; 2R2Y A; 2RRF A; 4QJ5 B; 5I2S A; 3HIE A; 2FJU B; 2KUQ A; 3GYP A; 4IFS A; 4QJ3 B; 4IOY X; 4OT1 A; 4QXA B; 4Z2N A; 2GUM A; 3U12 A; 3NWD A; 4KHA A; 3NWA A; 3FVC A; 4KHB A; 4GOU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
