4QXAB

Crystal structure of the rab9a-rutbc2 rbd complex
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
171
structure length
147
Chain Sequence
ATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVATDYVFRIIYP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport/protein binding
source organism Mus musculus
publication title Crystal Structure of the Rab9A-RUTBC2 RBD Complex Reveals the Molecular Basis for the Binding Specificity of Rab9A with RUTBC2
doi rcsb
molecule keywords Ras-related protein Rab-9A
total genus 30
structure length 147
sequence length 171
ec nomenclature
pdb deposition date 2014-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF12068 PH_RBD Rab-binding domain (RBD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.230 Mainly Beta Roll PH-domain like PH-domain like 4qxaB00
4QXAB
chains in the Genus database with same CATH superfamily
2Z59A 1WJ1A 3KSYA 2GJYA 5D3WA 1DBHA 3X23A 1LW3A 1MKEA 2CAYA 4HB0B 1NI2A 2PZ1A 1WGUA 2YF0A 5HE1A 4NY0A 1LB1A 1FHXA 1WVHA 2EJ8A 2HE7A 3OANA 1BWNA 2YT1A 2DN6A 4HAVB 1ZC4B 1PFJA 1AQCA 4HATB 2CRFA 4OT1A 2XQNM 5JHGA 1BTNA 4A6FB 1UEFA 4DX90 1MIXA 2GS0A 2IYBA 2YT2A 2QKLA 4DBBA 1AWEA 3BINA 2RUKB 2VSZA 2D9ZA 2KR0A 2ZKMX 3KY9A 3DXCA 2KCJA 2YRYA 2Q13A 1EF1A 2Z0OA 2DHJA 4KHBA 3PVWA 4D0NB 2Z14A 3AU4A 4A6FA 1XODA 1EAZA 2K8EA 1ISNA 3SNHA 2CY5A 3ODXA 1DDVA 2J0KA 2W2XD 1V89A 1DDMA 3TVVA 4F7UP 4KVGB 2J59M 4GZUA 3GYPA 4HB2B 2YT0A 5D3YA 3F5RA 1BTKA 1EVHA 1DYNA 1IRSA 5L81A 2NMBA 5LOPB 2D9YA 1V5MA 1XCGA 4GOUA 1K5DB 1MK7B 2DKQA 3A8QA 1U5FA 1UNQA 2CY4A 5GOWB 4CHJA 2KUQA 2DYNA 1NTYA 3A8PA 2P0FA 3IVFA 3A58A 4K2PA 5JLJB 2NZ8B 4EKUA 2BCJA 2K2UA 4F7GA 1V5PA 2ROVA 2KGXB 3KRWA 3SO6A 5JP4A 2Z0QA 3D8FA 3VOQA 1PLSA 1KZ7A 4TYZA 2COAA 1J19A 2KIGA 3TW1A 3VIAA 4HB4B 3DCXA 1EGXA 4KHAA 3CXBB 2LYDA 1OMWA 1H10A 1P5TA 4K2OA 4Y94A 1FHOA 3ODWA 2HTHB 1U5GA 3KRXA 2M14A 2K00A 1FHWA 1FOEA 2DHIA 5FI1A 3TFMA 2KUPA 1W1GA 2ADZA 1ZVRA 1J0WA 4HAWB 4HB3B 5D27A 1WG7A 5J3YA 5I2MA 2I5FA 2QKMA 5EFXA 4P7IA 2IFSA 2FJLA 3QWMA 4A5KA 1GC6A 1U27A 3GYOA 3AJ4A 4B6HA 4CHMA 2EMSA 4K81A 2EC1A 4K17A 1OY2A 4ZRJA 3RCPA 5I2SA 3P7ZA 1T77A 2K49A 2R2YA 3N7CA 4F7HA 2LOXA 3NWAA 2RLOA 1ZM0A 2LKOA 2L1CA 1V88A 4MK0A 2COFA 2J0JA 1KI1B 3UZTA 2N0YA 1M7EA 2J0MA 5J3TA 1X11A 5JHHA 2R0DA 3PZDA 2COCA 4GN1A 4DXAB 1RRPB 3PVUA 2UZSA 2OQBA 1BAKA 1W1HA 2DTCA 4YONA 3HK0A 4MT7A 1SHCA 5KQ4A 3MDBC 1FB8A 4KAXB 1OQNA 2LULA 2M38A 3QBVB 2L2IA 4QJ3B 3FSSA 1UNRA 1P3RA 2MKRA 1WI1A 1Q67A 3ULCA 2VKIA 2RSGA 3HSAA 4XWXA 1FGYA 5DH9B 3SYXA 3HIEA 4ZRKA 1RJ2A 3QIJA 3NSUA 5DI9B 1I2HA 1K5GB 3SUZA 1WGQA 3NW8A 4IOYX 1U29A 3PG7A 1M7RA 5HE3A 3DXDA 1X1GA 4IAPA 4Z2MB 3G9WA 2Y8FA 2I5CA 2DLWA 5KCVA 5LG4B 4L6EA 2Z0PA 1MIZB 2K2JA 2GCLA 4C0AA 1U2BA 3WYFB 1UPQA 2RRFA 1XD4A 3KZ1A 5C5BB 2EMTA 2R09A 1UPRA 2KIEA 2DFKA 4KHOA 3FEHA 5C79A 3PSCA 5DHFB 4HSIA 3U8ZA 1ZYIA 2Z4DA 1MAIA 1B55A 1UNPA 4MY6A 3ODOA 1E5WA 1P6SA 1ZSQA 4OSNA 5DIFB 2ROZB 3WA0A 4DIXA 1X1FA 1TQZA 2D4QA 3HW2B 4CSQA 5IRSA 3SV1A 1FGZA 5DHAB 4QXAB 2I1KA 1H4RA 2D9XA 2V76A 1GC7A 2OTXA 3U7DA 1V5UA 2YVCA 3ULBA 2RGNB 4HAUB 3O96A 4WJ7A 2RNRB 1Y5OA 2I1JA 1SGHA 3PP2A 1MK9B 2FJUB 4HAYB 2UVMA 1Z87A 1XR0B 2MFQA 2D9VA 4IFSA 2X18A 4PQ0A 1PMSA 1NTVA 1NU2A 2D9WA 1W1DA 3FM8C 1XX0A 3ZVRA 3OHMB 2Y7BA 5J3QA 2DA0A 2P0HA 2VRWB 2NBVA 4HAXB 4KHBB 4NSWA 5D3XA 2N23A 3ZDTA 3MPXA 1U5EA 5M4YB 2AL6A 2H7DA 1GG3A 3NWDA 1I7AA 1N3HA 1WJMA 5FI0A 1V61A 3CIKA 2YS5A 5CLQB 4HAZB 2DHKA 1DROA 3T06A 2LOZA 5D3VA 3D8EA 5C6RA 1QQGA 4HHVA 1Y19B 4HDQA 2YSZA 2D10A 4PNKA 2H7EA 3TCAA 3V5WA 4D6WA 2GCJA 3LJUX 3TO1A 2MDXA 2DYQA 3FVCA 2JP2A 1DDWA 3M1IB 3F0WA 1TXDA 4H8SA 2GUMA 3D8DA 1MI1A 2D2QA 4GMXB 4HDOA 1FAOA 5HE2A 4GNKB 3ML4A 2D11A 1ZC3B 2DX1A 4DX8A 4TKNA 1X86A 2CODA 3U12A 4A6HA 4EJNA 4QJ4B 2P0DA 1XKEA 3P6AA 2W2WA 4BBKA 1QC6A 1MPHA 2Z13A 3DXEA 2MWNB 2DKPA 3B77A 4CYEA 5LONB 2W2XC 4GXBA 3HQCA 2YS3A 3PVLA 3PEGA 5KQ1A 2YS1A 2AEHA 4QJ5B 1KZGA 5CLLB 2G35A 2ZPYA 3A98B 4EMOA 3BJIA 2UZRA 2ELBA 5C5BA 4GPTB 4Z2NA 2LG1A 4ZRIA 4GMVA 4A6KA 4WSFA 1TJ6A 1X05A 2DX5A 1U5DA 4L1RA 2Y8GA 3NWFA 4WVFB 2RVBB 3AU5A 5HE0A 2ELAA 4YL8A 5C16A 2P8VA 2E2XA
chains in the Genus database with same CATH topology
4KHBB 2Z59A 5I2MA 4QJ5B 2KIGA 2K49A 2K8EA 4HSIA 4GOUA 2R2YA 4Z2MB 1ZYIA 3TW1A 2Z4DA 3NWAA 4OT1A 4KHAA 4OSNA 4D6WA 3HIEA 3U12A 2GCJA 3TO1A 2YT2A 4Z2NA 2FJUB 4DIXA 5LG4B 5M4YB 2KUQA 4QJ4B 2GCLA 3TVVA 4CSQA 5IRSA 3NWDA 3FVCA 2KR0A 2ZKMX 4IFSA 2RRFA 3A58A 3GYOA 4L1RA 4PQ0A 2Z13A 3GYPA 3NWFA 3NW8A 2KIEA 4IOYX 4QXAB 5I2SA 4KHBA 2GUMA 4QJ3B 3FSSA 2Z14A 3OHMB 4KHOA 4GNKB 2NBVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QXA B; 
#chains in the Genus database with same CATH topology
 2Z59 A;  1WJ1 A;  3KSY A;  2GJY A;  5D3W A;  1DBH A;  3X23 A;  1LW3 A;  1MKE A;  2CAY A;  4HB0 B;  1NI2 A;  2PZ1 A;  1WGU A;  2YF0 A;  5HE1 A;  4NY0 A;  1LB1 A;  1FHX A;  1WVH A;  2EJ8 A;  2HE7 A;  3OAN A;  1BWN A;  2YT1 A;  2DN6 A;  4HAV B;  1ZC4 B;  1PFJ A;  1AQC A;  4HAT B;  2CRF A;  4OT1 A;  2XQN M;  5JHG A;  1BTN A;  4A6F B;  1UEF A;  4DX9 0;  1MIX A;  2GS0 A;  2IYB A;  2YT2 A;  2QKL A;  4DBB A;  1AWE A;  3BIN A;  2RUK B;  2VSZ A;  2D9Z A;  2KR0 A;  2ZKM X;  3KY9 A;  3DXC A;  2KCJ A;  2YRY A;  2Q13 A;  1EF1 A;  2Z0O A;  2DHJ A;  4KHB A;  3PVW A;  4D0N B;  2Z14 A;  3AU4 A;  4A6F A;  1XOD A;  1EAZ A;  2K8E A;  1ISN A;  3SNH A;  2CY5 A;  3ODX A;  1DDV A;  2J0K A;  2W2X D;  1V89 A;  1DDM A;  3TVV A;  4F7U P;  4KVG B;  2J59 M;  4GZU A;  3GYP A;  4HB2 B;  2YT0 A;  5D3Y A;  3F5R A;  1BTK A;  1EVH A;  1DYN A;  1IRS A;  5L81 A;  2NMB A;  5LOP B;  2D9Y A;  1V5M A;  1XCG A;  4GOU A;  1K5D B;  1MK7 B;  2DKQ A;  3A8Q A;  1U5F A;  1UNQ A;  2CY4 A;  5GOW B;  4CHJ A;  2KUQ A;  2DYN A;  1NTY A;  3A8P A;  2P0F A;  3IVF A;  3A58 A;  4K2P A;  5JLJ B;  2NZ8 B;  4EKU A;  2BCJ A;  2K2U A;  4F7G A;  1V5P A;  2ROV A;  2KGX B;  3KRW A;  3SO6 A;  5JP4 A;  2Z0Q A;  3D8F A;  3VOQ A;  1PLS A;  1KZ7 A;  4TYZ A;  2COA A;  1J19 A;  2KIG A;  3TW1 A;  3VIA A;  4HB4 B;  3DCX A;  1EGX A;  4KHA A;  3CXB B;  2LYD A;  1OMW A;  1H10 A;  1P5T A;  4K2O A;  4Y94 A;  1FHO A;  3ODW A;  2HTH B;  1U5G A;  3KRX A;  2M14 A;  2K00 A;  1FHW A;  1FOE A;  2DHI A;  5FI1 A;  3TFM A;  2KUP A;  1W1G A;  2ADZ A;  1ZVR A;  1J0W A;  4HAW B;  4HB3 B;  5D27 A;  1WG7 A;  5J3Y A;  5I2M A;  2I5F A;  2QKM A;  5EFX A;  4P7I A;  2IFS A;  2FJL A;  3QWM A;  4A5K A;  1GC6 A;  1U27 A;  3GYO A;  3AJ4 A;  4B6H A;  4CHM A;  2EMS A;  4K81 A;  2EC1 A;  4K17 A;  1OY2 A;  4ZRJ A;  3RCP A;  5I2S A;  3P7Z A;  1T77 A;  2K49 A;  2R2Y A;  3N7C A;  4F7H A;  2LOX A;  3NWA A;  2RLO A;  1ZM0 A;  2LKO A;  2L1C A;  1V88 A;  4MK0 A;  2COF A;  2J0J A;  1KI1 B;  3UZT A;  2N0Y A;  1M7E A;  2J0M A;  5J3T A;  1X11 A;  5JHH A;  2R0D A;  3PZD A;  2COC A;  4GN1 A;  4DXA B;  1RRP B;  3PVU A;  2UZS A;  2OQB A;  1BAK A;  1W1H A;  2DTC A;  4YON A;  3HK0 A;  4MT7 A;  1SHC A;  5KQ4 A;  3MDB C;  1FB8 A;  4KAX B;  1OQN A;  2LUL A;  2M38 A;  3QBV B;  2L2I A;  4QJ3 B;  3FSS A;  1UNR A;  1P3R A;  2MKR A;  1WI1 A;  1Q67 A;  3ULC A;  2VKI A;  2RSG A;  3HSA A;  4XWX A;  1FGY A;  5DH9 B;  3SYX A;  3HIE A;  4ZRK A;  1RJ2 A;  3QIJ A;  3NSU A;  5DI9 B;  1I2H A;  1K5G B;  3SUZ A;  1WGQ A;  3NW8 A;  4IOY X;  1U29 A;  3PG7 A;  1M7R A;  5HE3 A;  3DXD A;  1X1G A;  4IAP A;  4Z2M B;  3G9W A;  2Y8F A;  2I5C A;  2DLW A;  5KCV A;  5LG4 B;  4L6E A;  2Z0P A;  1MIZ B;  2K2J A;  2GCL A;  4C0A A;  1U2B A;  3WYF B;  1UPQ A;  2RRF A;  1XD4 A;  3KZ1 A;  5C5B B;  2EMT A;  2R09 A;  1UPR A;  2KIE A;  2DFK A;  4KHO A;  3FEH A;  5C79 A;  3PSC A;  5DHF B;  4HSI A;  3U8Z A;  1ZYI A;  2Z4D A;  1MAI A;  1B55 A;  1UNP A;  4MY6 A;  3ODO A;  1E5W A;  1P6S A;  1ZSQ A;  4OSN A;  5DIF B;  2ROZ B;  3WA0 A;  4DIX A;  1X1F A;  1TQZ A;  2D4Q A;  3HW2 B;  4CSQ A;  5IRS A;  3SV1 A;  1FGZ A;  5DHA B;  4QXA B;  2I1K A;  1H4R A;  2D9X A;  2V76 A;  1GC7 A;  2OTX A;  3U7D A;  1V5U A;  2YVC A;  3ULB A;  2RGN B;  4HAU B;  3O96 A;  4WJ7 A;  2RNR B;  1Y5O A;  2I1J A;  1SGH A;  3PP2 A;  1MK9 B;  2FJU B;  4HAY B;  2UVM A;  1Z87 A;  1XR0 B;  2MFQ A;  2D9V A;  4IFS A;  2X18 A;  4PQ0 A;  1PMS A;  1NTV A;  1NU2 A;  2D9W A;  1W1D A;  3FM8 C;  1XX0 A;  3ZVR A;  3OHM B;  2Y7B A;  5J3Q A;  2DA0 A;  2P0H A;  2VRW B;  2NBV A;  4HAX B;  4KHB B;  4NSW A;  5D3X A;  2N23 A;  3ZDT A;  3MPX A;  1U5E A;  5M4Y B;  2AL6 A;  2H7D A;  1GG3 A;  3NWD A;  1I7A A;  1N3H A;  1WJM A;  5FI0 A;  1V61 A;  3CIK A;  2YS5 A;  5CLQ B;  4HAZ B;  2DHK A;  1DRO A;  3T06 A;  2LOZ A;  5D3V A;  3D8E A;  5C6R A;  1QQG A;  4HHV A;  1Y19 B;  4HDQ A;  2YSZ A;  2D10 A;  4PNK A;  2H7E A;  3TCA A;  3V5W A;  4D6W A;  2GCJ A;  3LJU X;  3TO1 A;  2MDX A;  2DYQ A;  3FVC A;  2JP2 A;  1DDW A;  3M1I B;  3F0W A;  1TXD A;  4H8S A;  2GUM A;  3D8D A;  1MI1 A;  2D2Q A;  4GMX B;  4HDO A;  1FAO A;  5HE2 A;  4GNK B;  3ML4 A;  2D11 A;  1ZC3 B;  2DX1 A;  4DX8 A;  4TKN A;  1X86 A;  2COD A;  3U12 A;  4A6H A;  4EJN A;  4QJ4 B;  2P0D A;  1XKE A;  3P6A A;  2W2W A;  4BBK A;  1QC6 A;  1MPH A;  2Z13 A;  3DXE A;  2MWN B;  2DKP A;  3B77 A;  4CYE A;  5LON B;  2W2X C;  4GXB A;  3HQC A;  2YS3 A;  3PVL A;  3PEG A;  5KQ1 A;  2YS1 A;  2AEH A;  4QJ5 B;  1KZG A;  5CLL B;  2G35 A;  2ZPY A;  3A98 B;  4EMO A;  3BJI A;  2UZR A;  2ELB A;  5C5B A;  4GPT B;  4Z2N A;  2LG1 A;  4ZRI A;  4GMV A;  4A6K A;  4WSF A;  1TJ6 A;  1X05 A;  2DX5 A;  1U5D A;  4L1R A;  2Y8G A;  3NWF A;  4WVF B;  2RVB B;  3AU5 A;  5HE0 A;  2ELA A;  4YL8 A;  5C16 A;  2P8V A;  2E2X A; 
#chains in the Genus database with same CATH homology
 4KHB B;  2Z59 A;  5I2M A;  4QJ5 B;  2KIG A;  2K49 A;  2K8E A;  4HSI A;  4GOU A;  2R2Y A;  4Z2M B;  1ZYI A;  3TW1 A;  2Z4D A;  3NWA A;  4OT1 A;  4KHA A;  4OSN A;  4D6W A;  3HIE A;  3U12 A;  2GCJ A;  3TO1 A;  2YT2 A;  4Z2N A;  2FJU B;  4DIX A;  5LG4 B;  5M4Y B;  2KUQ A;  4QJ4 B;  2GCL A;  3TVV A;  4CSQ A;  5IRS A;  3NWD A;  3FVC A;  2KR0 A;  2ZKM X;  4IFS A;  2RRF A;  3A58 A;  3GYO A;  4L1R A;  4PQ0 A;  2Z13 A;  3GYP A;  3NWF A;  3NW8 A;  2KIE A;  4IOY X;  4QXA B;  5I2S A;  4KHB A;  2GUM A;  4QJ3 B;  3FSS A;  2Z14 A;  3OHM B;  4KHO A;  4GNK B;  2NBV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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