The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
175
|
structure length |
173
|
Chain Sequence |
SNFLAEQYERDRKAIINCCFSRPDHGEPPNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVIT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
pubmed doi rcsb |
| molecule tags |
Structural protein
|
| source organism |
Saccharomyces cerevisiae (strain atcc 204508 / s288c)
|
| molecule keywords |
Protein SSO2
|
| total genus |
50
|
| structure length |
173
|
| sequence length |
175
|
| chains with identical sequence |
D, F
|
| ec nomenclature | |
| pdb deposition date | 2016-10-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF15277 | Sec3-PIP2_bind | Exocyst complex component SEC3 N-terminal PIP2 binding PH |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | PH-domain like | PH-domain like |
#chains in the Genus database with same CATH superfamily 5LG4 B; 3A58 A; 3HIE A; 5M4Y B; #chains in the Genus database with same CATH topology 2PZ1 A; 3TW1 A; 5M4Y B; 1U5F A; 4CHJ A; 1UNQ A; 2P0H A; 1Y5O A; 3A8P A; 3X23 A; 1TQZ A; 2EC1 A; 3P6A A; 3TO1 A; 1XD4 A; 2LUL A; 3O96 A; 3A98 B; 1OY2 A; 1H10 A; 2LYD A; 4YL8 A; 3WYF B; 2YT0 A; 1SHC A; 1U2B A; 4P7I A; 5JLJ B; 5FI1 A; 2H7E A; 3FSS A; 1OMW A; 5DI9 B; 5LG4 B; 4PQ0 A; 2K8E A; 4HDQ A; 2H7D A; 3VIA A; 4KHA A; 3NWF A; 4WJ7 A; 1BTN A; 4HAZ B; 5LON B; 1EGX A; 2N23 A; 5KQ4 A; 3NWA A; 2LG1 A; 2AL6 A; 1AQC A; 1Y19 B; 2YS3 A; 4Z2N A; 5KQ1 A; 3QWM A; 2W2X D; 2CY5 A; 3PVL A; 3DXD A; 3GYO A; 2CAY A; 1XCG A; 5JHG A; 1I2H A; 1KI1 B; 3ML4 A; 3RCP A; 2M38 A; 2KUP A; 3ODO A; 2YS1 A; 3ULB A; 2LKO A; 2KIE A; 4KHB B; 4GXB A; 4HAY B; 1MK7 B; 4ZRK A; 5HE0 A; 4HDO A; 2COC A; 3HIE A; 3TCA A; 3BIN A; 4A5K A; 2ZPY A; 3PZD A; 4HB4 B; 4K81 A; 1FB8 A; 2D9V A; 4NY0 A; 3HK0 A; 4KVG B; 2IFS A; 3TFM A; 2G35 A; 3VOQ A; 4F7H A; 3KY9 A; 2J59 M; 4D0N B; 4HAU B; 2Z13 A; 1UPQ A; 2OQB A; 2NBV A; 5D27 A; 4ZRI A; 4HSI A; 4HAV B; 1AWE A; 3MPX A; 1MK9 B; 4OT1 A; 2J0J A; 2Z0O A; 4HB2 B; 4A6F A; 4A6K A; 4TKN A; 2NMB A; 4YON A; 2NZ8 B; 3G9W A; 1E5W A; 3ODX A; 2W2X C; 2R09 A; 4DIX A; 4QXA B; 1MIZ B; 2L1C A; 2VSZ A; 3ULC A; 4GZU A; 3HQC A; 1MI1 A; 3PP2 A; 4BBK A; 1PFJ A; 2GCJ A; 3M1I B; 1J19 A; 2YT1 A; 1DYN A; 4CSQ A; 5C6R A; 4B6H A; 3PSC A; 3KRW A; 1BTK A; 3F0W A; 1M7R A; 4C0A A; 3DXC A; 5CLQ B; 3UZT A; 1PMS A; 3QBV B; 3SUZ A; 1EAZ A; 2J0K A; 2R2Y A; 1BWN A; 1M7E A; 2GUM A; 3F5R A; 1I7A A; 1QQG A; 1RJ2 A; 3D8D A; 2DN6 A; 1X1G A; 4Z2M B; 1WGQ A; 3ZVR A; 2YS5 A; 1U29 A; 2YRY A; 1ZYI A; 2RNR B; 2I5F A; 4K2O A; 2D9X A; 3FM8 C; 4WVF B; 1XKE A; 3OAN A; 3NSU A; 3CIK A; 5CLL B; 5L81 A; 2GCL A; 2DLW A; 2P0F A; 2KUQ A; 1BAK A; 2R0D A; 1K5D B; 2I1K A; 4MY6 A; 2CY4 A; 2FJL A; 3D8F A; 2COF A; 5LOP B; 3PEG A; 5C5B A; 3D8E A; 4GMX B; 2DHJ A; 1DDW A; 4IAP A; 4K2P A; 5C79 A; 3U7D A; 1J0W A; 3P7Z A; 1Z87 A; 4CYE A; 5DH9 B; 2P8V A; 1XR0 B; 4OSN A; 1W1G A; 4A6F B; 4QJ3 B; 4DBB A; 2DX1 A; 5JHH A; 1T77 A; 1P3R A; 2Z59 A; 5D3Y A; 4HHV A; 2EJ8 A; 1DDM A; 3CXB B; 2HE7 A; 1TXD A; 4IOY X; 1KZ7 A; 1SGH A; 2KR0 A; 2QKM A; 1X05 A; 5FI0 A; 2ROV A; 2V76 A; 1LB1 A; 1U5D A; 2GJY A; 3BJI A; 4QJ4 B; 5KCV A; 4HB3 B; 4HAW B; 5J3T A; 1X86 A; 3WA0 A; 5JP4 A; 2KIG A; 2Z14 A; 4TYZ A; 1U5E A; 2DHK A; 4HB0 B; 2JP2 A; 3SYX A; 3SV1 A; 2MFQ A; 3KZ1 A; 2QKL A; 3A58 A; 3B77 A; 2YSZ A; 2DFK A; 3SO6 A; 2X18 A; 4DXA B; 4GPT B; 2LOZ A; 1GC7 A; 2DKP A; 3HSA A; 4EMO A; 1OQN A; 1V89 A; 5C5B B; 4A6H A; 2GS0 A; 1H4R A; 3AU5 A; 1ZSQ A; 3LJU X; 1NI2 A; 1V5U A; 4GN1 A; 2YVC A; 1XX0 A; 3IVF A; 5J3Y A; 2D4Q A; 3U12 A; 2DYQ A; 3NW8 A; 2D11 A; 1WJM A; 2L2I A; 3QIJ A; 4IFS A; 2Z4D A; 2RUK B; 2ZKM X; 3PG7 A; 1ZVR A; 3DCX A; 1WI1 A; 2DKQ A; 1GC6 A; 3PVW A; 1UNP A; 2RGN B; 2D9Y A; 4GNK B; 1NTV A; 2RRF A; 1V5M A; 4Y94 A; 4DX9 0; 2DHI A; 1QC6 A; 4CHM A; 1V5P A; 4F7U P; 2IYB A; 2DA0 A; 2K2U A; 1ZC4 B; 2BCJ A; 2Y8F A; 1V61 A; 3TVV A; 1DRO A; 4MK0 A; 2P0D A; 4L1R A; 2M14 A; 2K49 A; 3AU4 A; 2HTH B; 2Y8G A; 4ZRJ A; 1P5T A; 1TJ6 A; 2UZS A; 2E2X A; 3DXE A; 2YF0 A; 2Q13 A; 1KZG A; 1DBH A; 3KSY A; 2Z0Q A; 5J3Q A; 2MWN B; 1NTY A; 2VRW B; 2DTC A; 4WSF A; 2ROZ B; 1MKE A; 1W1D A; 4H8S A; 5DIF B; 1X11 A; 1U27 A; 1ZC3 B; 2ELA A; 2EMS A; 2D10 A; 5D3W A; 2D2Q A; 2Z0P A; 2J0M A; 1Q67 A; 1X1F A; 4KAX B; 2RLO A; 5IRS A; 2VKI A; 4GMV A; 3SNH A; 2FJU B; 4EJN A; 2Y7B A; 1B55 A; 2MDX A; 2LOX A; 3NWD A; 1ISN A; 1V88 A; 1XOD A; 1ZM0 A; 2W2W A; 4D6W A; 4HAX B; 3FVC A; 3AJ4 A; 1FHX A; 2UZR A; 1EF1 A; 1DDV A; 1IRS A; 1FGY A; 2D9Z A; 5C16 A; 3N7C A; 5DHA B; 5DHF B; 2K00 A; 3KRX A; 4HAT B; 1GG3 A; 3OHM B; 3ZDT A; 1FOE A; 5D3X A; 4GOU A; 1FHO A; 2RVB B; 2ELB A; 4F7G A; 1FAO A; 1NU2 A; 1WJ1 A; 4QJ5 B; 3PVU A; 4DX8 A; 1FHW A; 3T06 A; 2DX5 A; 5I2M A; 3U8Z A; 1EVH A; 5D3V A; 5EFX A; 1MPH A; 1UPR A; 1MAI A; 3A8Q A; 5GOW B; 1UNR A; 2OTX A; 2N0Y A; 1W1H A; 3V5W A; 2DYN A; 1UEF A; 2CRF A; 2ADZ A; 4NSW A; 1PLS A; 2I5C A; 2D9W A; 2RSG A; 1N3H A; 2KGX B; 4EKU A; 2COA A; 5HE2 A; 5HE1 A; 1FGZ A; 1P6S A; 1WG7 A; 2AEH A; 3MDB C; 2XQN M; 2YT2 A; 1K5G B; 2COD A; 4MT7 A; 2UVM A; 3HW2 B; 3GYP A; 1LW3 A; 1U5G A; 1RRP B; 4KHB A; 4PNK A; 1WGU A; 4K17 A; 4XWX A; 2EMT A; 2KCJ A; 3FEH A; 5I2S A; 5HE3 A; 2MKR A; 3ODW A; 4L6E A; 1WVH A; 2I1J A; 4KHO A; 2K2J A; 1MIX A; #chains in the Genus database with same CATH homology 4QJ4 B; 4IFS A; 2Z4D A; 3TW1 A; 3NWD A; 2ZKM X; 4DIX A; 2R2Y A; 5M4Y B; 2GUM A; 2YT2 A; 3FSS A; 4QXA B; 5I2M A; 3TVV A; 4D6W A; 3FVC A; 5LG4 B; 4PQ0 A; 2K8E A; 2KIG A; 2Z14 A; 4GNK B; 4Z2M B; 4L1R A; 4KHA A; 3GYP A; 3NWF A; 2K49 A; 2RRF A; 1ZYI A; 2KIE A; 4IOY X; 2GCJ A; 4KHB B; 4KHB A; 2Z13 A; 3TO1 A; 2NBV A; 4HSI A; 5I2S A; 2KR0 A; 3OHM B; 3A58 A; 3NWA A; 4OSN A; 4OT1 A; 3U12 A; 4GOU A; 4CSQ A; 5IRS A; 4Z2N A; 4QJ3 B; 2GCL A; 3NW8 A; 3HIE A; 2FJU B; 4QJ5 B; 4KHO A; 2KUQ A; 3GYO A; 2Z59 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
