The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
64
|
sequence length |
215
|
structure length |
188
|
Chain Sequence |
LLDKKWLTFALAIYTVFYLWVRWYEGVYGWSAGLDSFAPEFETYWMNFLYTEIVLEIVTASILWGYLWKTRDRNLAALTPREELRRNFTHLVWLVAYAWAIYWGASYFTEQDGTWHQTIVRDTDFTPSHIIEFYLSYPIYIITGFAAFIYAKTRLPFFAHTFWFMEELFVAPLHYGFVIFGWLALAVM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a membrane-bound metalloenzyme that catalyses the biological oxidation of methane.
pubmed doi rcsb |
| molecule keywords |
particulate methane monooxygenase, B subunit
|
| molecule tags |
Oxidoreductase, membrane protein
|
| source organism |
Methylococcus capsulatus
|
| total genus |
64
|
| structure length |
188
|
| sequence length |
215
|
| chains with identical sequence |
G, K
|
| ec nomenclature | |
| pdb deposition date | 2004-12-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF04896 | AmoC | Ammonia monooxygenase/methane monooxygenase, subunit C |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 | Particulate methane monooxygenase subunit c2. Chain: C |
#chains in the Genus database with same CATH superfamily 1YEW C; 3RFR C; 3RGB C; 4PI2 C; 3CHX C; 4PHZ C; 4PI0 C; #chains in the Genus database with same CATH topology 2OAC A; 5AIX A; 4MF6 A; 18GS A; 3DD3 A; 5AIS A; 4MPF A; 1M0U A; 3AY8 A; 5DAL B; 5DJM A; 1PL1 A; 4IQ1 A; 3LSZ A; 6GSU A; 2FHE A; 2PVQ A; 4GLT A; 5DAK A; 1GWC A; 4N0V A; 4HZ4 A; 5A5K A; 1TDI A; 1R5A A; 2AHE A; 5A1N B; 4AKI A; 4L8E A; 3LXZ A; 5BMU A; 1GLQ A; 16GS A; 1DUG A; 3VI7 A; 4G0I A; 3GUS A; 2AAW A; 1PL2 A; 1U87 A; 5A4U A; 1GSU A; 1K3Y A; 1BG5 A; 3HJO A; 3I6A A; 5A4V A; 2O5V A; 3LYP A; 5LCZ A; 3Q19 A; 4MK3 A; 4F0B A; 4GST A; 1RK4 A; 3GTU B; 1EV9 A; 4ISD A; 2GSR A; 14GS A; 4PNG A; 4WR4 A; 5ELA A; 3QAG A; 4IEL A; 2IMK A; 1PGT A; 1G6Y A; 2ON5 A; 4KDY A; 5FWG A; 4PXO A; 2OT3 A; 1GSY A; 4PTS A; 2EFC A; 4RI7 A; 1GSQ A; 3HMJ G; 1YVL A; 3GST A; 2GLR A; 1YY7 A; 5D9T A; 3O3T A; 3L0H A; 1YKC A; 3N9J A; 1GTB A; 4KGI A; 1Z9H A; 2O36 A; 3WYW A; 3IK9 A; 1AQV A; 1K0N A; 1PX7 A; 3LQ7 A; 6GSW A; 4ZBA A; 4KSM A; 2PGT A; 3BBY A; 3QAV A; 9GSS A; 1K0A A; 2C3N A; 4KX4 A; 2HQT A; 1XW6 A; 3IC8 A; 1U3I A; 3O76 A; 4CHS A; 3LG6 A; 4L5O A; 4JED A; 4Q5F A; 2CZ2 A; 5ECL B; 5J5N A; 3FR6 A; 4KAE A; 5D9X A; 3Q18 A; 1OYJ A; 4PUA A; 1K3O A; 4IVF A; 1MD4 A; 2EFE A; 2DSA A; 5ECH B; 4MP4 A; 5A5H A; 2CA8 A; 3FR9 A; 2UV8 G; 3IK7 A; 5D9V A; 3TU3 B; 3TOU A; 1MTC A; 5EL8 A; 1M9A A; 3F6F A; 2PMT A; 2UZ8 A; 4HI7 A; 4ZBD A; 2HRK B; 2R6K A; 4PX1 A; 3UAR A; 1LJR A; 3VWX A; 4E68 A; 5AGY A; 1A0F A; 1K0O A; 5EVO A; 3MDK A; 1BF5 A; 1FW1 A; 4I97 A; 4YQV A; 4OFN A; 1YDK A; 1TXU A; 2AB6 A; 1PMT A; 3VLN A; 1JZR A; 2HRK A; 3MAK A; 2WS2 A; 3NIV A; 4NAX A; 3KTL A; 2VCZ A; 4E8H A; 1VF2 A; 4EE0 A; 1YEW C; 1BYE A; 5ECO B; 1EEM A; 1GSS A; 3KXO A; 3F6D A; 3CSH A; 3CBU A; 2C80 A; 3GH6 A; 4ZB8 A; 5EY6 A; 4IQA A; 6GSY A; 3FR3 A; 1GNE A; 1JLV A; 2X64 A; 1PD2 1; 1G7O A; 3R3E A; 4MPG A; 4W66 A; 5DAK B; 1OE8 A; 2GSS A; 1M9B A; 2A2S A; 2F3M A; 5F05 A; 4YQU A; 2YV9 A; 4Q5Q A; 5J41 A; 4OFT A; 3ERF A; 3Q74 A; 5BMU B; 7GSS A; 3CRU A; 1EOH A; 4LMV A; 1GSD A; 3PGT A; 4G01 A; 4OMV A; 2VD1 A; 5AN1 A; 4E8E A; 6GSX A; 2VO4 A; 3ZML A; 3KM6 A; 4GSN A; 5G5F A; 3ZMK A; 4ZXG A; 1ZL9 A; 2PER A; 3VPQ A; 2IL3 A; 3FRC A; 4BVX B; 3ISO A; 2CAI A; 3HJM A; 1PA3 A; 5DJL A; 2C3Q A; 2A2R A; 3IE3 A; 3TOT A; 4KE3 A; 2WDU A; 5ECS A; 3RBT A; 1GUK A; 2CVD A; 2WRT A; 4BVX A; 3VI5 A; 4QMK A; 5GZZ B; 1VF3 A; 20GS A; 1SVO A; 4LMW A; 2HSM B; 4AGS A; 2GDR A; 1AXD A; 5J4U A; 5DQS A; 2WW3 A; 3M1G A; 4Q5N A; 4ACS A; 4KH7 A; 2GTU A; 4O7H A; 3KMN A; 1GTA A; 4BL7 A; 3CSJ A; 3CSI A; 4KDU A; 2HSM A; 3LYK A; 5A5H B; 3TGZ A; 2EFD A; 4IS0 A; 3PR8 A; 3ERG A; 1K0D A; 1B48 A; 3VUR A; 2FNO A; 4PQI A; 5LD0 A; 3W8S A; 2VD0 A; 5HFK A; 4USS A; 2F8F A; 3P8W A; 4IBP A; 5J47 A; 4GTU A; 1GTU A; 1ML6 A; 2VCV A; 4AI6 A; 5A34 A; 1GUL A; 3ZFL A; 1GUM A; 1GSF A; 2WW1 A; 3R2Q A; 4GF0 A; 4PQH A; 2C3T A; 3EE2 A; 4AKG A; 3VK9 A; 1I1I P; 4PHZ C; 2D2Z A; 5G5E A; 5A4W A; 2ON7 A; 1YQ1 A; 3WD6 A; 2WVZ A; 5D9W A; 3H1N A; 2HSN B; 2N5F A; 5ECR B; 1GLP A; 1TW9 A; 1YJ6 A; 3QAW A; 3D0Z A; 2WVY A; 2O3E A; 3GSS A; 1VF1 A; 3RFR C; 4MF5 A; 1S4B P; 2LJR A; 4IKH A; 4ZB6 A; 2WZS A; 2HSN A; 1C72 A; 3FYG A; 3KJY A; 1VF4 A; 2VCW A; 3HKR A; 2NTO A; 4IJI A; 4G0K A; 5D73 A; 4MDC A; 4YQM A; 2J9H A; 5JCU A; 1E6B A; 4K0G A; 4MF7 A; 2VCX A; 6GST A; 1K0C A; 5JCW A; 1IYI A; 1PKW A; 4IW9 A; 1PN9 A; 4EDY A; 4O92 A; 4BVY A; 1GSE A; 5ECM B; 2C4J A; 3QR6 A; 4PGT A; 1B4P A; 2YV7 A; 4AKX B; 3G7I A; 3C8E A; 1EV4 A; 5ELG A; 3UBL A; 4NHW A; 2WVX B; 5DCG A; 1EOG A; 3CHX C; 4HOJ A; 1LBK A; 4JZQ A; 4PUR A; 3IR4 A; 1N2A A; 1GNW A; 4IGJ A; 1AW9 A; 4AKH A; 5B7C A; 4DEJ A; 4L5L A; 2WB9 A; 1G6W A; 2WVX A; 4ID0 A; 4EDZ A; 4PI0 C; 4GDF A; 3UBK A; 4F0C A; 1V2A A; 4GSS A; 5J40 A; 1PKZ A; 1TU7 A; 5GST A; 2R3X A; 4YAV A; 1F3A A; 1HQO A; 4ECB A; 1JLW A; 5F06 A; 1M99 A; 1USB A; 3LFL A; 2YCD A; 2PBJ A; 6GSS A; 2R4V A; 4G0L A; 4JBB A; 4PI2 C; 4EC0 A; 19GS A; 5J4Y A; 4BL7 B; 4G10 A; 5DAL A; 4QQ7 A; 1PX6 A; 5DDL A; 4ECC A; 1MD3 A; 5F8B A; 3KMO A; 1Y1U A; 1Q4J A; 4RI6 A; 3CRT A; 3GUR A; 2EFH A; 3N5O A; 1K3L A; 5A1N A; 5ECN B; 4GCI A; 4ECJ A; 5FHI A; 4ECI A; 5A34 B; 4HZ2 A; 1OKT A; 1AQW A; 17GS A; 4Q5R A; 22GS A; 3M0F A; 5GSS A; 2IMI A; 4EXJ A; 1XW5 A; 3LJR A; 4ZB7 A; 3M3M A; 6GSV A; 4ZB9 A; 2CZ3 A; 3LXT A; 10GS A; 2VCT A; 2CAQ A; 3GTU A; 1U88 A; 3VPT A; 1UA5 A; 4F03 A; 3F63 A; 2HRA A; 1V40 A; 1ZGN A; 11GS A; 1BG1 A; 3G7J A; 4YAP A; 1FHE A; 2OAD A; 3P90 A; 1F3B A; 5AIV A; 2DC5 A; 5IQY A; 2GST A; 4YH2 A; 8GSS A; 4OFM A; 1KBN A; 4HJ2 A; 3UAP A; 1HNA A; 3EIN A; 2R5G A; 1SVM A; 5KEJ A; 3U6V A; 2C8U A; 2VCQ A; 2VKZ G; 2GSQ A; 2HNL A; 5ECK B; 4N3Z A; 2V6K A; 1K0M A; 1N25 A; 2OA7 A; 2WJU A; 4ZBB A; 1K0B A; 1HNC A; 1NHY A; 13GS A; 4MZW A; 4PNF A; 4G9H A; 4G19 A; 4WR5 A; 4BVY B; 5ECP B; 1BAY A; 3DGQ A; 5J4V A; 3SWL A; 1XWK A; 1SVL A; 4FQU A; 1GUH A; 1TU8 A; 3PPU A; 3M8N A; 4TOP A; 1XWG A; 1B8X A; 2H1L A; 4J2F A; 1AQX A; 2WW2 A; 4KDX A; 1Y6E A; 4K0N A; 5ECQ B; 1GTI A; 2JL4 A; 3ZFB A; 1BX9 A; 5FT3 A; 4KF9 A; 2WW0 A; 1HNB A; 4NHZ A; 5ECI B; 1OE7 A; 5F07 A; 3RGB C; 3UVH A; 1IYH A; 3GX0 A; 5F0G A; 3IBH A; 3CWG A; 4FXY P; 3I69 A; 12GS A; 3FY7 A; 1F2E A; #chains in the Genus database with same CATH homology 1YEW C; 3RFR C; 3RGB C; 4PI2 C; 3CHX C; 4PHZ C; 4PI0 C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
