3RGBC

Crystal structure of particulate methane monooxygenase from methylococcus capsulatus (bath)
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
242
structure length
213
Chain Sequence
LLDKKWLTFALAIYTVFYLWVRWYEGVYGWSAGLDSFAPEFETYWMNFLYTEIVLEIVTASILWGYLWKTRDRNLAALTPREELRRNFTHLVWLVAYAWAIYWGASYFTEQDGTWHQTIVRDTDFTPSHIIEFYLSYPIYIITGFAAFIYAKTRLPFFAKGISLPYLVLVVGPFMILPNVLALAVMGTLTQTFYSFAQGGLGQSLCEAVDEGL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methane monooxygenase subunit B2
publication title Crystal Structure and Characterization of Particulate Methane Monooxygenase from Methylocystis species Strain M.
pubmed doi rcsb
total genus 73
structure length 213
sequence length 242
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2011-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF04896 AmoC Ammonia monooxygenase/methane monooxygenase, subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 Particulate methane monooxygenase subunit c2. Chain: C 3rgbC00
4PI2C 3RFRC 4PI0C 3RGBC 4PHZC 1YEWC 3CHXC
chains in the Genus database with same CATH superfamily
3R2QA 1PN9A 3SWLA 4PHZC 4L5OA 4O7HA 3GUSA 1GSUA 4N3ZA 4YQMA 4GSNA 12GSA 3RGBC 3ZFBA 3F6FA 4ISDA 3KXOA 1XW6A 3Q18A 3KM6A 5DCGA 1GNWA 4IBPA 2R3XA 3EE2A 3IK7A 5D9WA 6GSVA 2WRTA 1HQOA 1GWCA 1EV9A 2IMKA 5D9XA 3DGQA 5FT3A 3AY8A 5A5HA 4PQHA 4CHSA 1K0MA 1UA5A 4ECJA 5LCZA 1HNBA 5AISA 2HRKB 1BG1A 3UARA 2OT3A 1HNAA 1PL1A 2PBJA 5DALA 5ECOB 2VD0A 1F3AA 1XW5A 4NHZA 5EVOA 4TOPA 1EEMA 20GSA 5J4UA 1OE7A 2VCWA 4PX1A 2VCZA 4LMWA 2GSTA 3KMNA 3QR6A 3C8EA 4KH7A 3QAVA 1TXUA 2CZ3A 4IVFA 4MP4A 5DDLA 4ZBDA 1XWKA 3RFRC 1V40A 1K0DA 2HNLA 4AKGA 1TDIA 9GSSA 3GTUA 1GLPA 3KJYA 2VCVA 3IC8A 4LMVA 17GSA 3LSZA 1K3OA 4OFMA 2R5GA 4HOJA 2PVQA 4BVYB 4J2FA 4KAEA 2HSMB 2AB6A 3KTLA 4QMKA 6GSYA 3QAWA 1E6BA 1KBNA 2O5VA 2YCDA 3GSSA 1YVLA 1DUGA 1BF5A 4EXJA 3NIVA 3UAPA 5A34A 3FR6A 3M1GA 2HSNA 5D9VA 4AKXB 4N0VA 2GDRA 1LJRA 13GSA 2YV7A 1K0BA 4KE3A 2F3MA 1GSFA 3LG6A 2C3TA 4YAVA 5J47A 1JZRA 1YEWC 5A5HB 2WW0A 5ELGA 4MK3A 1I1IP 1M9AA 4PNGA 4PI2C 1K0CA 1B48A 2AHEA 2WW2A 5ECNB 2C3NA 2GSQA 1M0UA 3QAGA 3HJOA 2WW3A 3TU3B 6GSTA 1JLVA 5DALB 3CBUA 3N9JA 4YQUA 4YAPA 3UVHA 1G7OA 1AQXA 3G7IA 4WR4A 3VURA 4F0CA 3IE3A 3ISOA 4GCIA 3IBHA 1OKTA 3VI5A 1C72A 5F06A 1ZGNA 1GSQA 4IKHA 5EY6A 1K3LA 3IK9A 2WS2A 3Q19A 2WVZA 2V6KA 5HFKA 4BVYA 2HSMA 1VF2A 5GSSA 2WW1A 1B8XA 4PQIA 3GTUB 2DC5A 4ECCA 1N25A 2R6KA 3ZMLA 3CSJA 2AAWA 3BBYA 4AKIA 3ERFA 4PUAA 2R4VA 3M0FA 2YV9A 5AGYA 5ECQB 19GSA 4PNFA 4I97A 4IJIA 5GSTA 2O36A 1EOGA 2GSRA 5A34B 4ZBAA 1GTIA 2HSNB 3I6AA 6GSXA 1TW9A 4JBBA 1JLWA 2A2RA 4EDZA 5A5KA 2WDUA 4K0NA 5ECPB 3M3MA 1GNEA 5GZZB 1ML6A 1B4PA 2F8FA 1OE8A 1TU7A 4L8EA 4AI6A 1AXDA 4OMVA 5F07A 4BVXB 3HJMA 2DSAA 2ON7A 4ECIA 2PERA 3FR3A 4IQAA 4QQ7A 1PD21 1EOHA 6GSWA 1MD3A 3CRTA 4ZBBA 1AW9A 3ZMKA 8GSSA 4K0GA 1Y6EA 4KDYA 4OFNA 1K0NA 4MF5A 2IL3A 5J5NA 3LYPA 2CAQA 3LJRA 4ZXGA 4JEDA 4G0IA 5ECSA 1BYEA 4G9HA 3LXTA 2EFHA 1R5AA 2UV8G 4HJ2A 1FHEA 3GX0A 2EFDA 4GSTA 4KDXA 3N5OA 3P8WA 3VLNA 3H1NA 3VWXA 4FQUA 3WD6A 1YDKA 3UBKA 1U88A 1PKZA 5JCUA 1A0FA 5J41A 1Q4JA 5A4WA 1GLQA 1PL2A 3ERGA 1GTAA 2OADA 1VF3A 2VCXA 4MZWA 3GH6A 2OACA 2GLRA 1F3BA 2UZ8A 2CVDA 5F0GA 1VF4A 2C3QA 2PGTA 4HI7A 4IELA 4ZB7A 5IQYA 3L0HA 4ZB8A 1SVOA 3TGZA 5D73A 1Y1UA 2FHEA 4BVXA 2N5FA 4PURA 2ON5A 3PGTA 5A4VA 4JZQA 4IGJA 1S4BP 2PMTA 4KF9A 2JL4A 3MDKA 3DD3A 4KSMA 3FR9A 2WVXB 4AGSA 1VF1A 1K3YA 4OFTA 5J40A 1K0OA 1GSYA 3CRUA 1PKWA 1PX6A 1YJ6A 3F6DA 3HKRA 10GSA 2C80A 14GSA 4E8EA 4Q5RA 2WB9A 4PTSA 4RI7A 5AIVA 4ZB9A 1BG5A 3KMOA 3FY7A 1PA3A 3GURA 5G5FA 1NHYA 2GTUA 1GUHA 5JCWA 2C4JA 1FW1A 4O92A 4AKHA 3F63A 3P90A 3EINA 5ELAA 1MTCA 1M9BA 4EC0A 3LXZA 5EL8A 2VD1A 4GF0A 2HQTA 3CHXC 1YQ1A 1GUKA 1YKCA 2NTOA 1PMTA 7GSSA 4GDFA 4G19A 4IQ1A 5ECKB 4IW9A 1GSSA 2H1LA 4PI0C 6GSSA 5DJMA 4GTUA 4YH2A 1G6YA 4G0LA 1EV4A 2A2SA 4EDYA 2EFCA 5F8BA 3ZFLA 4MF6A 2LJRA 2D2ZA 3G7JA 1XWGA 5LD0A 1SVMA 2WVXA 4F03A 3CSHA 3VPQA 1BAYA 4GLTA 1TU8A 4WR5A 3R3EA 1K0AA 3IR4A 1IYHA 3LYKA 4GSSA 1GSEA 4BL7A 1GULA 5G5EA 1M99A 2WZSA 5DAKA 3U6VA 3VK9A 3PR8A 2VCTA 18GSA 2EFEA 5FHIA 5FWGA 1MD4A 2CZ2A 22GSA 1U87A 3D0ZA 4FXYP 4L5LA 3LFLA 2GSSA 2WVYA 3WYWA 3FRCA 5ECHB 5ECLB 1PX7A 2J9HA 4Q5QA 3VI7A 1Z9HA 4KGIA 4USSA 2C8UA 5BMUA 3M8NA 1BX9A 3HMJG 5D9TA 4MDCA 5A1NB 1RK4A 1GTUA 4G01A 4ACSA 4EE0A 1GUMA 5ECMB 4E68A 4IS0A 4HZ4A 3MAKA 2X64A 4KDUA 16GSA 3FYGA 3RBTA 3I69A 4Q5FA 1N2AA 1AQVA 4PGTA 1U3IA 1V2AA 2O3EA 1ZL9A 1YY7A 3O3TA 1OYJA 4MPFA 5J4YA 1IYIA 1PGTA 2IMIA 5AIXA 4G0KA 4HZ2A 4Q5NA 2HRKA 3CWGA 4PXOA 3TOUA 4YQVA 3LQ7A 4ZB6A 5ECRB 3VPTA 3CSIA 3PPUA 4ID0A 1GSDA 3Q74A 4F0BA 2VKZG 5A4UA 4ECBA 4BL7B 4MF7A 3W8SA 5B7CA 5DAKB 5ECIB 2HRAA 1GTBA 3TOTA 4DEJA 4RI6A 4NHWA 5DJLA 2WJUA 1G6WA 5J4VA 1LBKA 6GSUA 4G10A 2VCQA 2OA7A 2VO4A 1F2EA 4W66A 5KEJA 5F05A 3UBLA 5AN1A 5DQSA 5A1NA 4KX4A 2CA8A 3O76A 1SVLA 1HNCA 1USBA 3GSTA 4E8HA 2CAIA 4NAXA 5BMUB 2FNOA 11GSA 4MPGA 1AQWA
chains in the Genus database with same CATH topology
4PI2C 3RFRC 4PI0C 3RGBC 4PHZC 1YEWC 3CHXC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PI2 C;  3RFR C;  4PI0 C;  3RGB C;  4PHZ C;  1YEW C;  3CHX C; 
#chains in the Genus database with same CATH topology
 3R2Q A;  1PN9 A;  3SWL A;  4PHZ C;  4L5O A;  4O7H A;  3GUS A;  1GSU A;  4N3Z A;  4YQM A;  4GSN A;  12GS A;  3RGB C;  3ZFB A;  3F6F A;  4ISD A;  3KXO A;  1XW6 A;  3Q18 A;  3KM6 A;  5DCG A;  1GNW A;  4IBP A;  2R3X A;  3EE2 A;  3IK7 A;  5D9W A;  6GSV A;  2WRT A;  1HQO A;  1GWC A;  1EV9 A;  2IMK A;  5D9X A;  3DGQ A;  5FT3 A;  3AY8 A;  5A5H A;  4PQH A;  4CHS A;  1K0M A;  1UA5 A;  4ECJ A;  5LCZ A;  1HNB A;  5AIS A;  2HRK B;  1BG1 A;  3UAR A;  2OT3 A;  1HNA A;  1PL1 A;  2PBJ A;  5DAL A;  5ECO B;  2VD0 A;  1F3A A;  1XW5 A;  4NHZ A;  5EVO A;  4TOP A;  1EEM A;  20GS A;  5J4U A;  1OE7 A;  2VCW A;  4PX1 A;  2VCZ A;  4LMW A;  2GST A;  3KMN A;  3QR6 A;  3C8E A;  4KH7 A;  3QAV A;  1TXU A;  2CZ3 A;  4IVF A;  4MP4 A;  5DDL A;  4ZBD A;  1XWK A;  3RFR C;  1V40 A;  1K0D A;  2HNL A;  4AKG A;  1TDI A;  9GSS A;  3GTU A;  1GLP A;  3KJY A;  2VCV A;  3IC8 A;  4LMV A;  17GS A;  3LSZ A;  1K3O A;  4OFM A;  2R5G A;  4HOJ A;  2PVQ A;  4BVY B;  4J2F A;  4KAE A;  2HSM B;  2AB6 A;  3KTL A;  4QMK A;  6GSY A;  3QAW A;  1E6B A;  1KBN A;  2O5V A;  2YCD A;  3GSS A;  1YVL A;  1DUG A;  1BF5 A;  4EXJ A;  3NIV A;  3UAP A;  5A34 A;  3FR6 A;  3M1G A;  2HSN A;  5D9V A;  4AKX B;  4N0V A;  2GDR A;  1LJR A;  13GS A;  2YV7 A;  1K0B A;  4KE3 A;  2F3M A;  1GSF A;  3LG6 A;  2C3T A;  4YAV A;  5J47 A;  1JZR A;  1YEW C;  5A5H B;  2WW0 A;  5ELG A;  4MK3 A;  1I1I P;  1M9A A;  4PNG A;  4PI2 C;  1K0C A;  1B48 A;  2AHE A;  2WW2 A;  5ECN B;  2C3N A;  2GSQ A;  1M0U A;  3QAG A;  3HJO A;  2WW3 A;  3TU3 B;  6GST A;  1JLV A;  5DAL B;  3CBU A;  3N9J A;  4YQU A;  4YAP A;  3UVH A;  1G7O A;  1AQX A;  3G7I A;  4WR4 A;  3VUR A;  4F0C A;  3IE3 A;  3ISO A;  4GCI A;  3IBH A;  1OKT A;  3VI5 A;  1C72 A;  5F06 A;  1ZGN A;  1GSQ A;  4IKH A;  5EY6 A;  1K3L A;  3IK9 A;  2WS2 A;  3Q19 A;  2WVZ A;  2V6K A;  5HFK A;  4BVY A;  2HSM A;  1VF2 A;  5GSS A;  2WW1 A;  1B8X A;  4PQI A;  3GTU B;  2DC5 A;  4ECC A;  1N25 A;  2R6K A;  3ZML A;  3CSJ A;  2AAW A;  3BBY A;  4AKI A;  3ERF A;  4PUA A;  2R4V A;  3M0F A;  2YV9 A;  5AGY A;  5ECQ B;  19GS A;  4PNF A;  4I97 A;  4IJI A;  5GST A;  2O36 A;  1EOG A;  2GSR A;  5A34 B;  4ZBA A;  1GTI A;  2HSN B;  3I6A A;  6GSX A;  1TW9 A;  4JBB A;  1JLW A;  2A2R A;  4EDZ A;  5A5K A;  2WDU A;  4K0N A;  5ECP B;  3M3M A;  1GNE A;  5GZZ B;  1ML6 A;  1B4P A;  2F8F A;  1OE8 A;  1TU7 A;  4L8E A;  4AI6 A;  1AXD A;  4OMV A;  5F07 A;  4BVX B;  3HJM A;  2DSA A;  2ON7 A;  4ECI A;  2PER A;  3FR3 A;  4IQA A;  4QQ7 A;  1PD2 1;  1EOH A;  6GSW A;  1MD3 A;  3CRT A;  4ZBB A;  1AW9 A;  3ZMK A;  8GSS A;  4K0G A;  1Y6E A;  4KDY A;  4OFN A;  1K0N A;  4MF5 A;  2IL3 A;  5J5N A;  3LYP A;  2CAQ A;  3LJR A;  4ZXG A;  4JED A;  4G0I A;  5ECS A;  1BYE A;  4G9H A;  3LXT A;  2EFH A;  1R5A A;  2UV8 G;  4HJ2 A;  1FHE A;  3GX0 A;  2EFD A;  4GST A;  4KDX A;  3N5O A;  3P8W A;  3VLN A;  3H1N A;  3VWX A;  4FQU A;  3WD6 A;  1YDK A;  3UBK A;  1U88 A;  1PKZ A;  5JCU A;  1A0F A;  5J41 A;  1Q4J A;  5A4W A;  1GLQ A;  1PL2 A;  3ERG A;  1GTA A;  2OAD A;  1VF3 A;  2VCX A;  4MZW A;  3GH6 A;  2OAC A;  2GLR A;  1F3B A;  2UZ8 A;  2CVD A;  5F0G A;  1VF4 A;  2C3Q A;  2PGT A;  4HI7 A;  4IEL A;  4ZB7 A;  5IQY A;  3L0H A;  4ZB8 A;  1SVO A;  3TGZ A;  5D73 A;  1Y1U A;  2FHE A;  4BVX A;  2N5F A;  4PUR A;  2ON5 A;  3PGT A;  5A4V A;  4JZQ A;  4IGJ A;  1S4B P;  2PMT A;  4KF9 A;  2JL4 A;  3MDK A;  3DD3 A;  4KSM A;  3FR9 A;  2WVX B;  4AGS A;  1VF1 A;  1K3Y A;  4OFT A;  5J40 A;  1K0O A;  1GSY A;  3CRU A;  1PKW A;  1PX6 A;  1YJ6 A;  3F6D A;  3HKR A;  10GS A;  2C80 A;  14GS A;  4E8E A;  4Q5R A;  2WB9 A;  4PTS A;  4RI7 A;  5AIV A;  4ZB9 A;  1BG5 A;  3KMO A;  3FY7 A;  1PA3 A;  3GUR A;  5G5F A;  1NHY A;  2GTU A;  1GUH A;  5JCW A;  2C4J A;  1FW1 A;  4O92 A;  4AKH A;  3F63 A;  3P90 A;  3EIN A;  5ELA A;  1MTC A;  1M9B A;  4EC0 A;  3LXZ A;  5EL8 A;  2VD1 A;  4GF0 A;  2HQT A;  3CHX C;  1YQ1 A;  1GUK A;  1YKC A;  2NTO A;  1PMT A;  7GSS A;  4GDF A;  4G19 A;  4IQ1 A;  5ECK B;  4IW9 A;  1GSS A;  2H1L A;  4PI0 C;  6GSS A;  5DJM A;  4GTU A;  4YH2 A;  1G6Y A;  4G0L A;  1EV4 A;  2A2S A;  4EDY A;  2EFC A;  5F8B A;  3ZFL A;  4MF6 A;  2LJR A;  2D2Z A;  3G7J A;  1XWG A;  5LD0 A;  1SVM A;  2WVX A;  4F03 A;  3CSH A;  3VPQ A;  1BAY A;  4GLT A;  1TU8 A;  4WR5 A;  3R3E A;  1K0A A;  3IR4 A;  1IYH A;  3LYK A;  4GSS A;  1GSE A;  4BL7 A;  1GUL A;  5G5E A;  1M99 A;  2WZS A;  5DAK A;  3U6V A;  3VK9 A;  3PR8 A;  2VCT A;  18GS A;  2EFE A;  5FHI A;  5FWG A;  1MD4 A;  2CZ2 A;  22GS A;  1U87 A;  3D0Z A;  4FXY P;  4L5L A;  3LFL A;  2GSS A;  2WVY A;  3WYW A;  3FRC A;  5ECH B;  5ECL B;  1PX7 A;  2J9H A;  4Q5Q A;  3VI7 A;  1Z9H A;  4KGI A;  4USS A;  2C8U A;  5BMU A;  3M8N A;  1BX9 A;  3HMJ G;  5D9T A;  4MDC A;  5A1N B;  1RK4 A;  1GTU A;  4G01 A;  4ACS A;  4EE0 A;  1GUM A;  5ECM B;  4E68 A;  4IS0 A;  4HZ4 A;  3MAK A;  2X64 A;  4KDU A;  16GS A;  3FYG A;  3RBT A;  3I69 A;  4Q5F A;  1N2A A;  1AQV A;  4PGT A;  1U3I A;  1V2A A;  2O3E A;  1ZL9 A;  1YY7 A;  3O3T A;  1OYJ A;  4MPF A;  5J4Y A;  1IYI A;  1PGT A;  2IMI A;  5AIX A;  4G0K A;  4HZ2 A;  4Q5N A;  2HRK A;  3CWG A;  4PXO A;  3TOU A;  4YQV A;  3LQ7 A;  4ZB6 A;  5ECR B;  3VPT A;  3CSI A;  3PPU A;  4ID0 A;  1GSD A;  3Q74 A;  4F0B A;  2VKZ G;  5A4U A;  4ECB A;  4BL7 B;  4MF7 A;  3W8S A;  5B7C A;  5DAK B;  5ECI B;  2HRA A;  1GTB A;  3TOT A;  4DEJ A;  4RI6 A;  4NHW A;  5DJL A;  2WJU A;  1G6W A;  5J4V A;  1LBK A;  6GSU A;  4G10 A;  2VCQ A;  2OA7 A;  2VO4 A;  1F2E A;  4W66 A;  5KEJ A;  5F05 A;  3UBL A;  5AN1 A;  5DQS A;  5A1N A;  4KX4 A;  2CA8 A;  3O76 A;  1SVL A;  1HNC A;  1USB A;  3GST A;  4E8H A;  2CAI A;  4NAX A;  5BMU B;  2FNO A;  11GS A;  4MPG A;  1AQW A; 
#chains in the Genus database with same CATH homology
 4PI2 C;  3RFR C;  4PI0 C;  3RGB C;  4PHZ C;  1YEW C;  3CHX C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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