3RFRC

Crystal structure of particulate methane monooxygenase (pmmo) from methylocystis sp. strain m
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
237
structure length
210
Chain Sequence
ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGWMALGVFGVVLQILGRIHALIGKEGVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure and Characterization of Particulate Methane Monooxygenase from Methylocystis species Strain M.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords PmoB
total genus 75
structure length 210
sequence length 237
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2011-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF04896 AmoC Ammonia monooxygenase/methane monooxygenase, subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 Particulate methane monooxygenase subunit c2. Chain: C 3rfrC00
3RFRC 4PI2C 3CHXC 3RGBC 4PI0C 1YEWC 4PHZC
chains in the Genus database with same CATH superfamily
1C72A 4ECBA 4IJIA 1PL2A 2CZ2A 4L5LA 4ZB7A 5J40A 2OACA 4AKIA 4OMVA 4G0IA 1LJRA 2FHEA 2HQTA 4GSSA 1EOHA 1IYIA 1TW9A 1USBA 2R4VA 2VCZA 4NHZA 4HZ2A 1MD4A 4G9HA 5ECMB 4G0LA 2WW0A 2CAIA 4ISDA 1HNCA 1F3BA 1K3LA 1XWGA 2R5GA 1B8XA 1K0MA 4O92A 4PQIA 4IKHA 4YAPA 3SWLA 1XWKA 1MD3A 3LG6A 2N5FA 2HNLA 2VCQA 3MAKA 2A2RA 2C3QA 4JEDA 3U6VA 5FT3A 4BL7A 1ZL9A 1M9BA 4JBBA 3P8WA 4E8EA 2UZ8A 1M99A 5DCGA 3F63A 4AGSA 2AHEA 2DC5A 18GSA 3VI7A 2WRTA 3MDKA 3PPUA 4BVXA 1PN9A 3ISOA 5EVOA 5G5EA 4IGJA 2WJUA 3HKRA 1YEWC 1BG5A 4KE3A 4EDYA 5ELAA 2PVQA 1EV9A 2HRAA 1GSYA 17GSA 2JL4A 1G6YA 3GSSA 5LD0A 2GSRA 4QMKA 2O3EA 5BMUB 4Q5NA 3KMNA 3RFRC 1M0UA 3GX0A 5DJMA 4FQUA 4E8HA 3VPTA 1R5AA 2VCWA 5BMUA 4YQUA 4MF6A 4ZB9A 3VK9A 2D2ZA 1GSDA 3ERFA 4OFMA 3KM6A 3IC8A 1PKZA 3M0FA 4LMVA 1GNWA 2WVXA 1BAYA 1PX6A 1YQ1A 4IQ1A 5ECRB 1GSUA 2VCVA 4E68A 4PTSA 5GSSA 4DEJA 3LQ7A 4MDCA 1N25A 3P90A 4YQMA 4GLTA 3LYPA 4MZWA 3LXZA 3CHXC 4NHWA 4PXOA 4IW9A 1YDKA 2H1LA 1FHEA 3UBLA 4ZBBA 5EL8A 2OADA 5F8BA 3ZFLA 4F03A 1BF5A 5A4WA 5A5HB 2GTUA 3QAVA 3O76A 2VCXA 4ZB8A 5J47A 1Y1UA 2GDRA 2YCDA 5A5HA 3LFLA 4CHSA 3DD3A 5A34B 4KH7A 1EV4A 1HQOA 4N0VA 1YY7A 4G0KA 14GSA 4PNFA 1GTBA 6GSTA 3AY8A 1GTIA 5A34A 2WZSA 5DDLA 6GSXA 4OFTA 1U87A 5B7CA 3KTLA 1A0FA 3W8SA 4AKGA 1BYEA 4ID0A 4GTUA 5A4UA 3I69A 4ECCA 2R3XA 4KSMA 3KXOA 4KDUA 4EC0A 1TU8A 2C3TA 2C3NA 2VD1A 2WW2A 12GSA 3L0HA 4IBPA 5FHIA 1GSFA 3G7JA 4KAEA 4BL7B 3IK9A 2UV8G 5D9XA 4GSNA 5J4UA 4USSA 4HZ4A 9GSSA 3GURA 4EXJA 4GDFA 1PKWA 3G7IA 5ECKB 4K0NA 3QR6A 2DSAA 4PGTA 2GSQA 2HRKB 3KJYA 5GZZB 4BVXB 2CA8A 6GSUA 5ECSA 3LXTA 5ECHB 3IK7A 2HRKA 3GTUB 1V40A 1K0CA 5AN1A 3C8EA 2WVYA 2O5VA 5EY6A 1B4PA 1K0NA 2GLRA 3UAPA 3GTUA 4ZBAA 1PL1A 1F2EA 2PMTA 3D0ZA 2NTOA 4TOPA 3Q74A 1G6WA 1FW1A 1K0BA 5J5NA 4AKHA 1XW5A 4KGIA 4PI2C 3FR3A 3N9JA 3TGZA 4Q5RA 22GSA 1VF2A 1E6BA 2IL3A 5DJLA 4ACSA 4O7HA 5AIVA 4FXYP 3VURA 4ZB6A 5G5FA 2WVXB 4RI7A 1VF3A 2A2SA 2IMIA 3VWXA 4AI6A 3CSIA 4PX1A 1MTCA 5F0GA 1K3YA 4PNGA 1GUMA 3CBUA 1YKCA 4YQVA 3HJMA 3VLNA 1GUKA 5J41A 5HFKA 1PMTA 4IQAA 5ECOB 1ML6A 4MPGA 1K3OA 1XW6A 2HSMB 3FY7A 3N5OA 3F6FA 4MP4A 3FYGA 1OKTA 4EE0A 3GUSA 2PGTA 2O36A 3M1GA 1UA5A 2HSMA 19GSA 3CRUA 3LSZA 3FR9A 2EFEA 11GSA 2V6KA 3QAWA 4WR5A 1B48A 1G7OA 3UBKA 1AQWA 1TXUA 2OA7A 3GSTA 4MPFA 4WR4A 2IMKA 4KX4A 1V2AA 1GWCA 1LBKA 5LCZA 4RI6A 2GSTA 3RBTA 3NIVA 4Q5QA 1BX9A 4KDYA 4NAXA 4KDXA 4GSTA 5D9WA 1GSSA 2CAQA 1U3IA 2WB9A 1BG1A 1Z9HA 8GSSA 1SVLA 1SVMA 1DUGA 3Q19A 1NHYA 4MF5A 3VI5A 4F0BA 3I6AA 3FRCA 3ZMKA 4W66A 20GSA 2WW3A 2R6KA 2EFDA 1S4BP 4YH2A 4ECJA 3ZMLA 2CVDA 3EINA 4Q5FA 5DAKB 5D9TA 1YJ6A 3EE2A 5J4YA 1Q4JA 4AKXB 3R2QA 4QQ7A 1YVLA 2GSSA 5D9VA 2WDUA 5DAKA 2YV9A 5A4VA 5ECNB 1GSQA 5A1NB 4BVYB 4MF7A 1GSEA 1I1IP 4F0CA 3M8NA 4IS0A 4HOJA 5A1NA 1PGTA 3WD6A 4BVYA 1HNAA 4PURA 5AIXA 3FR6A 2VD0A 1AXDA 2AAWA 1GTUA 4J2FA 4ZXGA 3PR8A 3DGQA 6GSVA 1KBNA 1GUHA 2C80A 2C8UA 5ECLB 3CSJA 3WYWA 1AQXA 2OT3A 1IYHA 3IBHA 4HJ2A 4L8EA 3UVHA 2VO4A 3CRTA 4HI7A 1U88A 5AISA 1ZGNA 4LMWA 1F3AA 1VF1A 5DALB 2F8FA 1SVOA 2J9HA 1AW9A 3UARA 1OYJA 5ECIB 1JLWA 1GTAA 1K0AA 2X64A 5JCWA 3PGTA 1JZRA 5DALA 4G10A 2WS2A 2LJRA 4G19A 4ECIA 4JZQA 3HMJG 3R3EA 3QAGA 1TU7A 2HSNB 1K0DA 5FWGA 2C4JA 4IELA 2WVZA 7GSSA 4L5OA 4YAVA 2HSNA 1JLVA 3O3TA 6GSWA 3CWGA 1N2AA 4N3ZA 5D73A 2ON5A 4PI0C 5DQSA 5ECPB 1RK4A 4MK3A 5ELGA 5GSTA 4EDZA 16GSA 3GH6A 2FNOA 1GULA 3H1NA 1K0OA 6GSSA 5A5KA 1PX7A 3HJOA 4G01A 2EFHA 3IR4A 3F6DA 13GSA 5F07A 4OFNA 5F06A 5IQYA 1EOGA 2VCTA 4KF9A 3VPQA 1PD21 2AB6A 3M3MA 2VKZG 5KEJA 1PA3A 5JCUA 2EFCA 2F3MA 4GCIA 3IE3A 3RGBC 1GNEA 3Q18A 1HNBA 3TOUA 2YV7A 4PHZC 4K0GA 2PBJA 2PERA 6GSYA 5ECQB 3BBYA 1VF4A 3ERGA 4IVFA 3TU3B 3ZFBA 1GLQA 1M9AA 4PQHA 1GLPA 1OE8A 5F05A 1TDIA 3KMOA 3LJRA 3CSHA 1Y6EA 5J4VA 2ON7A 10GSA 3TOTA 5AGYA 4I97A 3LYKA 2WW1A 4PUAA 1AQVA 4GF0A 2CZ3A 1OE7A 1EEMA 4ZBDA
chains in the Genus database with same CATH topology
3RFRC 4PI2C 3CHXC 3RGBC 4PI0C 1YEWC 4PHZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RFR C;  4PI2 C;  3CHX C;  3RGB C;  4PI0 C;  1YEW C;  4PHZ C; 
#chains in the Genus database with same CATH topology
 1C72 A;  4ECB A;  4IJI A;  1PL2 A;  2CZ2 A;  4L5L A;  4ZB7 A;  5J40 A;  2OAC A;  4AKI A;  4OMV A;  4G0I A;  1LJR A;  2FHE A;  2HQT A;  4GSS A;  1EOH A;  1IYI A;  1TW9 A;  1USB A;  2R4V A;  2VCZ A;  4NHZ A;  4HZ2 A;  1MD4 A;  4G9H A;  5ECM B;  4G0L A;  2WW0 A;  2CAI A;  4ISD A;  1HNC A;  1F3B A;  1K3L A;  1XWG A;  2R5G A;  1B8X A;  1K0M A;  4O92 A;  4PQI A;  4IKH A;  4YAP A;  3SWL A;  1XWK A;  1MD3 A;  3LG6 A;  2N5F A;  2HNL A;  2VCQ A;  3MAK A;  2A2R A;  2C3Q A;  4JED A;  3U6V A;  5FT3 A;  4BL7 A;  1ZL9 A;  1M9B A;  4JBB A;  3P8W A;  4E8E A;  2UZ8 A;  1M99 A;  5DCG A;  3F63 A;  4AGS A;  2AHE A;  2DC5 A;  18GS A;  3VI7 A;  2WRT A;  3MDK A;  3PPU A;  4BVX A;  1PN9 A;  3ISO A;  5EVO A;  5G5E A;  4IGJ A;  2WJU A;  3HKR A;  1YEW C;  1BG5 A;  4KE3 A;  4EDY A;  5ELA A;  2PVQ A;  1EV9 A;  2HRA A;  1GSY A;  17GS A;  2JL4 A;  1G6Y A;  3GSS A;  5LD0 A;  2GSR A;  4QMK A;  2O3E A;  5BMU B;  4Q5N A;  3KMN A;  3RFR C;  1M0U A;  3GX0 A;  5DJM A;  4FQU A;  4E8H A;  3VPT A;  1R5A A;  2VCW A;  5BMU A;  4YQU A;  4MF6 A;  4ZB9 A;  3VK9 A;  2D2Z A;  1GSD A;  3ERF A;  4OFM A;  3KM6 A;  3IC8 A;  1PKZ A;  3M0F A;  4LMV A;  1GNW A;  2WVX A;  1BAY A;  1PX6 A;  1YQ1 A;  4IQ1 A;  5ECR B;  1GSU A;  2VCV A;  4E68 A;  4PTS A;  5GSS A;  4DEJ A;  3LQ7 A;  4MDC A;  1N25 A;  3P90 A;  4YQM A;  4GLT A;  3LYP A;  4MZW A;  3LXZ A;  3CHX C;  4NHW A;  4PXO A;  4IW9 A;  1YDK A;  2H1L A;  1FHE A;  3UBL A;  4ZBB A;  5EL8 A;  2OAD A;  5F8B A;  3ZFL A;  4F03 A;  1BF5 A;  5A4W A;  5A5H B;  2GTU A;  3QAV A;  3O76 A;  2VCX A;  4ZB8 A;  5J47 A;  1Y1U A;  2GDR A;  2YCD A;  5A5H A;  3LFL A;  4CHS A;  3DD3 A;  5A34 B;  4KH7 A;  1EV4 A;  1HQO A;  4N0V A;  1YY7 A;  4G0K A;  14GS A;  4PNF A;  1GTB A;  6GST A;  3AY8 A;  1GTI A;  5A34 A;  2WZS A;  5DDL A;  6GSX A;  4OFT A;  1U87 A;  5B7C A;  3KTL A;  1A0F A;  3W8S A;  4AKG A;  1BYE A;  4ID0 A;  4GTU A;  5A4U A;  3I69 A;  4ECC A;  2R3X A;  4KSM A;  3KXO A;  4KDU A;  4EC0 A;  1TU8 A;  2C3T A;  2C3N A;  2VD1 A;  2WW2 A;  12GS A;  3L0H A;  4IBP A;  5FHI A;  1GSF A;  3G7J A;  4KAE A;  4BL7 B;  3IK9 A;  2UV8 G;  5D9X A;  4GSN A;  5J4U A;  4USS A;  4HZ4 A;  9GSS A;  3GUR A;  4EXJ A;  4GDF A;  1PKW A;  3G7I A;  5ECK B;  4K0N A;  3QR6 A;  2DSA A;  4PGT A;  2GSQ A;  2HRK B;  3KJY A;  5GZZ B;  4BVX B;  2CA8 A;  6GSU A;  5ECS A;  3LXT A;  5ECH B;  3IK7 A;  2HRK A;  3GTU B;  1V40 A;  1K0C A;  5AN1 A;  3C8E A;  2WVY A;  2O5V A;  5EY6 A;  1B4P A;  1K0N A;  2GLR A;  3UAP A;  3GTU A;  4ZBA A;  1PL1 A;  1F2E A;  2PMT A;  3D0Z A;  2NTO A;  4TOP A;  3Q74 A;  1G6W A;  1FW1 A;  1K0B A;  5J5N A;  4AKH A;  1XW5 A;  4KGI A;  4PI2 C;  3FR3 A;  3N9J A;  3TGZ A;  4Q5R A;  22GS A;  1VF2 A;  1E6B A;  2IL3 A;  5DJL A;  4ACS A;  4O7H A;  5AIV A;  4FXY P;  3VUR A;  4ZB6 A;  5G5F A;  2WVX B;  4RI7 A;  1VF3 A;  2A2S A;  2IMI A;  3VWX A;  4AI6 A;  3CSI A;  4PX1 A;  1MTC A;  5F0G A;  1K3Y A;  4PNG A;  1GUM A;  3CBU A;  1YKC A;  4YQV A;  3HJM A;  3VLN A;  1GUK A;  5J41 A;  5HFK A;  1PMT A;  4IQA A;  5ECO B;  1ML6 A;  4MPG A;  1K3O A;  1XW6 A;  2HSM B;  3FY7 A;  3N5O A;  3F6F A;  4MP4 A;  3FYG A;  1OKT A;  4EE0 A;  3GUS A;  2PGT A;  2O36 A;  3M1G A;  1UA5 A;  2HSM A;  19GS A;  3CRU A;  3LSZ A;  3FR9 A;  2EFE A;  11GS A;  2V6K A;  3QAW A;  4WR5 A;  1B48 A;  1G7O A;  3UBK A;  1AQW A;  1TXU A;  2OA7 A;  3GST A;  4MPF A;  4WR4 A;  2IMK A;  4KX4 A;  1V2A A;  1GWC A;  1LBK A;  5LCZ A;  4RI6 A;  2GST A;  3RBT A;  3NIV A;  4Q5Q A;  1BX9 A;  4KDY A;  4NAX A;  4KDX A;  4GST A;  5D9W A;  1GSS A;  2CAQ A;  1U3I A;  2WB9 A;  1BG1 A;  1Z9H A;  8GSS A;  1SVL A;  1SVM A;  1DUG A;  3Q19 A;  1NHY A;  4MF5 A;  3VI5 A;  4F0B A;  3I6A A;  3FRC A;  3ZMK A;  4W66 A;  20GS A;  2WW3 A;  2R6K A;  2EFD A;  1S4B P;  4YH2 A;  4ECJ A;  3ZML A;  2CVD A;  3EIN A;  4Q5F A;  5DAK B;  5D9T A;  1YJ6 A;  3EE2 A;  5J4Y A;  1Q4J A;  4AKX B;  3R2Q A;  4QQ7 A;  1YVL A;  2GSS A;  5D9V A;  2WDU A;  5DAK A;  2YV9 A;  5A4V A;  5ECN B;  1GSQ A;  5A1N B;  4BVY B;  4MF7 A;  1GSE A;  1I1I P;  4F0C A;  3M8N A;  4IS0 A;  4HOJ A;  5A1N A;  1PGT A;  3WD6 A;  4BVY A;  1HNA A;  4PUR A;  5AIX A;  3FR6 A;  2VD0 A;  1AXD A;  2AAW A;  1GTU A;  4J2F A;  4ZXG A;  3PR8 A;  3DGQ A;  6GSV A;  1KBN A;  1GUH A;  2C80 A;  2C8U A;  5ECL B;  3CSJ A;  3WYW A;  1AQX A;  2OT3 A;  1IYH A;  3IBH A;  4HJ2 A;  4L8E A;  3UVH A;  2VO4 A;  3CRT A;  4HI7 A;  1U88 A;  5AIS A;  1ZGN A;  4LMW A;  1F3A A;  1VF1 A;  5DAL B;  2F8F A;  1SVO A;  2J9H A;  1AW9 A;  3UAR A;  1OYJ A;  5ECI B;  1JLW A;  1GTA A;  1K0A A;  2X64 A;  5JCW A;  3PGT A;  1JZR A;  5DAL A;  4G10 A;  2WS2 A;  2LJR A;  4G19 A;  4ECI A;  4JZQ A;  3HMJ G;  3R3E A;  3QAG A;  1TU7 A;  2HSN B;  1K0D A;  5FWG A;  2C4J A;  4IEL A;  2WVZ A;  7GSS A;  4L5O A;  4YAV A;  2HSN A;  1JLV A;  3O3T A;  6GSW A;  3CWG A;  1N2A A;  4N3Z A;  5D73 A;  2ON5 A;  4PI0 C;  5DQS A;  5ECP B;  1RK4 A;  4MK3 A;  5ELG A;  5GST A;  4EDZ A;  16GS A;  3GH6 A;  2FNO A;  1GUL A;  3H1N A;  1K0O A;  6GSS A;  5A5K A;  1PX7 A;  3HJO A;  4G01 A;  2EFH A;  3IR4 A;  3F6D A;  13GS A;  5F07 A;  4OFN A;  5F06 A;  5IQY A;  1EOG A;  2VCT A;  4KF9 A;  3VPQ A;  1PD2 1;  2AB6 A;  3M3M A;  2VKZ G;  5KEJ A;  1PA3 A;  5JCU A;  2EFC A;  2F3M A;  4GCI A;  3IE3 A;  3RGB C;  1GNE A;  3Q18 A;  1HNB A;  3TOU A;  2YV7 A;  4PHZ C;  4K0G A;  2PBJ A;  2PER A;  6GSY A;  5ECQ B;  3BBY A;  1VF4 A;  3ERG A;  4IVF A;  3TU3 B;  3ZFB A;  1GLQ A;  1M9A A;  4PQH A;  1GLP A;  1OE8 A;  5F05 A;  1TDI A;  3KMO A;  3LJR A;  3CSH A;  1Y6E A;  5J4V A;  2ON7 A;  10GS A;  3TOT A;  5AGY A;  4I97 A;  3LYK A;  2WW1 A;  4PUA A;  1AQV A;  4GF0 A;  2CZ3 A;  1OE7 A;  1EEM A;  4ZBD A; 
#chains in the Genus database with same CATH homology
 3RFR C;  4PI2 C;  3CHX C;  3RGB C;  4PI0 C;  1YEW C;  4PHZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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