4PI0C

Crystal structure of particulate methane monooxygenase from methylocystis sp. atcc 49242 (rockwell) soaked in copper
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
241
structure length
217
Chain Sequence
ESVVDLRGMWIGLVLLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVTPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGTWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGLFGWMALGVFGVVLQILMRIHALVGKEGVKLLTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Effects of zinc on particulate methane monooxygenase activity and structure.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords unknown peptide
total genus 79
structure length 217
sequence length 241
chains with identical sequence G, K
ec nomenclature ec 1.14.18.3: Methane monooxygenase (particulate).
pdb deposition date 2014-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 Particulate methane monooxygenase subunit c2. Chain: C 4pi0C00
3RFRC 4PI0C 3RGBC 3CHXC 4PI2C 4PHZC 1YEWC
chains in the Genus database with same CATH superfamily
6GSSA 1GLQA 4JBBA 2VCVA 1K0NA 1NHYA 1Y6EA 4YQVA 1GSQA 5F07A 5DAKB 1PKWA 20GSA 4GSTA 4MF5A 1PGTA 4EE0A 1MD3A 2H1LA 2WVXB 3ZMLA 5G5EA 3N5OA 4ECBA 5A34B 2WW3A 2WZSA 5DJMA 3TOUA 3VI7A 4DEJA 4PGTA 2HNLA 4IELA 1AQWA 3HJMA 3UBLA 2A2RA 2WDUA 5AGYA 3I6AA 6GSYA 2VD1A 4GCIA 1GLPA 5DAKA 4JEDA 1OE7A 5F0GA 1Z9HA 4MZWA 2VCWA 2WVXA 1GUHA 5A34A 3IK7A 1XW6A 4YQMA 4O92A 3UVHA 3RBTA 4PNGA 4NHWA 4Q5RA 1HNCA 1PN9A 1VF4A 1SVLA 5AISA 3GSSA 4YQUA 1TW9A 3GUSA 3M3MA 2F8FA 3F63A 4YAPA 2HQTA 1SVMA 4WR5A 4AKIA 2WW1A 1F3AA 3L0HA 4BVYB 2PERA 4GF0A 3CHXC 1HNAA 3G7IA 4OFNA 3UARA 1FW1A 4ZBDA 5A4VA 3FR9A 1HNBA 1AW9A 2VD0A 4AKGA 2HSMB 2UZ8A 3F6FA 1AQXA 1K3YA 3CSHA 4KF9A 1GUMA 6GSTA 1GSFA 1M9BA 4PI0C 2EFDA 4PUAA 5D9VA 4K0NA 4GSNA 3GSTA 4USSA 4N3ZA 1GSUA 1TU7A 2YV9A 2IL3A 5HFKA 4E8EA 2WVZA 5GSTA 2AB6A 2HRAA 5KEJA 2HSMA 4NHZA 1JZRA 4GTUA 3DD3A 3CWGA 1LJRA 2WJUA 1U88A 2DSAA 9GSSA 5A4WA 3D0ZA 1K0AA 3HKRA 5ECNB 4LMVA 5AIXA 2VCXA 5ECKB 1LBKA 1K3OA 4ZB7A 1BG1A 2HRKB 2R4VA 6GSXA 4HZ2A 4IGJA 1BAYA 5J40A 3BBYA 18GSA 5J4UA 3O3TA 5JCWA 1B4PA 4OFTA 5FHIA 3RGBC 4KDYA 5J41A 3HMJG 2WW0A 4IBPA 2GSSA 1K0MA 3ZFLA 1G6WA 5J4VA 1PA3A 3VURA 3H1NA 1E6BA 6GSUA 1K3LA 2HRKA 3FRCA 3M0FA 5FT3A 3MAKA 12GSA 1EOGA 1GWCA 5D9WA 1YQ1A 1K0OA 4KX4A 3IC8A 4QQ7A 1U87A 2VKZG 3UBKA 1M0UA 3AY8A 4ECJA 1YY7A 3KTLA 3VI5A 1V40A 1BX9A 2PVQA 4Q5QA 4BVXA 1JLWA 5ECOB 2C3NA 3UAPA 13GSA 2GDRA 3C8EA 4HOJA 4IJIA 5D9XA 3P90A 1HQOA 4F0CA 2FNOA 5J47A 3QAWA 2R6KA 5J4YA 3HJOA 2EFEA 2YV7A 3TOTA 1GTUA 5DDLA 4EDZA 17GSA 4F03A 4PQIA 1IYHA 2C3QA 2FHEA 4L5OA 4ZBAA 2LJRA 3PPUA 3ZFBA 1ML6A 5A5KA 3IK9A 3LG6A 4ZB8A 2UV8G 3EE2A 4G19A 2R5GA 3LFLA 4KH7A 2PMTA 1GNEA 4IS0A 4KDUA 4HJ2A 1EEMA 5G5FA 1XWGA 4QMKA 4PURA 14GSA 1AXDA 5EL8A 4TOPA 1MTCA 4G01A 4MPFA 5DALB 4L8EA 4CHSA 5ECMB 5LCZA 2ON7A 4J2FA 5F05A 4G0KA 4Q5NA 1PL1A 1GTBA 1GSSA 2VCQA 1B8XA 4IQ1A 4YAVA 2GTUA 6GSVA 3R3EA 3SWLA 3VPQA 1EOHA 2IMKA 4WR4A 5EVOA 2WB9A 2EFHA 1GNWA 4L5LA 4G10A 4BVYA 1IYIA 4LMWA 4RI7A 5ECRB 1DUGA 1VF2A 2F3MA 2WS2A 1GSYA 4ECCA 2AHEA 4MPGA 5DJLA 4BL7B 1N2AA 3CSJA 5F8BA 1K0BA 4N0VA 2PGTA 1YEWC 3GURA 3RFRC 3W8SA 3ERFA 1AQVA 1GULA 2ON5A 5ELAA 5ECPB 2C3TA 5GZZB 3M8NA 19GSA 4JZQA 4Q5FA 3ERGA 3VK9A 4GLTA 5FWGA 2EFCA 5IQYA 1XW5A 2OT3A 1YDKA 3PGTA 3GTUB 3F6DA 3O76A 4MF6A 4BL7A 2R3XA 1Y1UA 1YKCA 5BMUB 2HSNB 1Q4JA 3QAVA 4MP4A 3QR6A 4MF7A 2IMIA 1VF3A 5F06A 1YJ6A 4I97A 2X64A 1PX6A 3FR6A 4KSMA 3QAGA 1K0CA 1TXUA 3KM6A 1MD4A 5ECLB 4GDFA 4GSSA 1M99A 1ZL9A 2OADA 2D2ZA 2V6KA 5BMUA 1B48A 2HSNA 1VF1A 7GSSA 2C4JA 1EV4A 1R5AA 22GSA 4AI6A 4MK3A 1EV9A 4NAXA 1PD21 1U3IA 2GSRA 3TU3B 3LYPA 3LSZA 4AKHA 2J9HA 3KJYA 4ZXGA 1C72A 1GTIA 5A5HB 1SVOA 3P8WA 1JLVA 3FYGA 1F3BA 3VLNA 4PQHA 4ID0A 5LD0A 3VPTA 1G7OA 4E8HA 3LXTA 3I69A 2O5VA 6GSWA 1GUKA 3LYKA 2CAQA 1BYEA 1A0FA 4PXOA 3CSIA 3R2QA 3Q18A 4OFMA 1RK4A 5A5HA 2O3EA 5A1NB 2AAWA 1I1IP 4EDYA 4ACSA 4AGSA 5ECQB 1KBNA 2DC5A 2GLRA 3CRUA 4G9HA 4MDCA 5JCUA 5ECSA 2OACA 3EINA 4FQUA 4KGIA 5A4UA 3MDKA 1OYJA 1XWKA 2CZ3A 4ISDA 4K0GA 1ZGNA 2PBJA 4W66A 5A1NA 1OE8A 4ZBBA 3VWXA 1GSEA 4OMVA 3PR8A 5AN1A 3LQ7A 3FR3A 4PI2C 1YVLA 2C80A 2GSTA 2VCZA 1BF5A 2A2SA 1UA5A 4KDXA 3ISOA 5ECHB 4IVFA 4AKXB 3CRTA 5EY6A 5DALA 2GSQA 3LJRA 3Q19A 3GX0A 4FXYP 2CZ2A 1TDIA 4EC0A 2VO4A 2CA8A 4ZB9A 4YH2A 5DQSA 3WYWA 3KXOA 1F2EA 5D9TA 2JL4A 4EXJA 4IKHA 16GSA 1USBA 2CAIA 3N9JA 4G0IA 1GTAA 4KAEA 3DGQA 5ECIB 3FY7A 3GH6A 5DCGA 1G6YA 2C8UA 3IE3A 4ECIA 5D73A 3IR4A 4RI6A 3KMOA 1N25A 3G7JA 4IQAA 2OA7A 4O7HA 1GSDA 1K0DA 3TGZA 3U6VA 2WVYA 1BG5A 2O36A 1PKZA 2WW2A 1TU8A 2YCDA 3Q74A 4PTSA 2N5FA 1FHEA 5B7CA 10GSA 1OKTA 3GTUA 1V2AA 2CVDA 2NTOA 4ZB6A 3LXZA 4IW9A 11GSA 5AIVA 4PX1A 4PHZC 3NIVA 3KMNA 4F0BA 3CBUA 4KE3A 5J5NA 4PNFA 4G0LA 4HZ4A 5ELGA 1PL2A 2WRTA 4BVXB 5GSSA 1S4BP 3M1GA 1PMTA 1M9AA 3ZMKA 8GSSA 1PX7A 4HI7A 2VCTA 4E68A 3IBHA 3WD6A
chains in the Genus database with same CATH topology
3RFRC 4PI0C 3RGBC 3CHXC 4PI2C 4PHZC 1YEWC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RFR C;  4PI0 C;  3RGB C;  3CHX C;  4PI2 C;  4PHZ C;  1YEW C; 
#chains in the Genus database with same CATH topology
 6GSS A;  1GLQ A;  4JBB A;  2VCV A;  1K0N A;  1NHY A;  1Y6E A;  4YQV A;  1GSQ A;  5F07 A;  5DAK B;  1PKW A;  20GS A;  4GST A;  4MF5 A;  1PGT A;  4EE0 A;  1MD3 A;  2H1L A;  2WVX B;  3ZML A;  5G5E A;  3N5O A;  4ECB A;  5A34 B;  2WW3 A;  2WZS A;  5DJM A;  3TOU A;  3VI7 A;  4DEJ A;  4PGT A;  2HNL A;  4IEL A;  1AQW A;  3HJM A;  3UBL A;  2A2R A;  2WDU A;  5AGY A;  3I6A A;  6GSY A;  2VD1 A;  4GCI A;  1GLP A;  5DAK A;  4JED A;  1OE7 A;  5F0G A;  1Z9H A;  4MZW A;  2VCW A;  2WVX A;  1GUH A;  5A34 A;  3IK7 A;  1XW6 A;  4YQM A;  4O92 A;  3UVH A;  3RBT A;  4PNG A;  4NHW A;  4Q5R A;  1HNC A;  1PN9 A;  1VF4 A;  1SVL A;  5AIS A;  3GSS A;  4YQU A;  1TW9 A;  3GUS A;  3M3M A;  2F8F A;  3F63 A;  4YAP A;  2HQT A;  1SVM A;  4WR5 A;  4AKI A;  2WW1 A;  1F3A A;  3L0H A;  4BVY B;  2PER A;  4GF0 A;  3CHX C;  1HNA A;  3G7I A;  4OFN A;  3UAR A;  1FW1 A;  4ZBD A;  5A4V A;  3FR9 A;  1HNB A;  1AW9 A;  2VD0 A;  4AKG A;  2HSM B;  2UZ8 A;  3F6F A;  1AQX A;  1K3Y A;  3CSH A;  4KF9 A;  1GUM A;  6GST A;  1GSF A;  1M9B A;  4PI0 C;  2EFD A;  4PUA A;  5D9V A;  4K0N A;  4GSN A;  3GST A;  4USS A;  4N3Z A;  1GSU A;  1TU7 A;  2YV9 A;  2IL3 A;  5HFK A;  4E8E A;  2WVZ A;  5GST A;  2AB6 A;  2HRA A;  5KEJ A;  2HSM A;  4NHZ A;  1JZR A;  4GTU A;  3DD3 A;  3CWG A;  1LJR A;  2WJU A;  1U88 A;  2DSA A;  9GSS A;  5A4W A;  3D0Z A;  1K0A A;  3HKR A;  5ECN B;  4LMV A;  5AIX A;  2VCX A;  5ECK B;  1LBK A;  1K3O A;  4ZB7 A;  1BG1 A;  2HRK B;  2R4V A;  6GSX A;  4HZ2 A;  4IGJ A;  1BAY A;  5J40 A;  3BBY A;  18GS A;  5J4U A;  3O3T A;  5JCW A;  1B4P A;  4OFT A;  5FHI A;  3RGB C;  4KDY A;  5J41 A;  3HMJ G;  2WW0 A;  4IBP A;  2GSS A;  1K0M A;  3ZFL A;  1G6W A;  5J4V A;  1PA3 A;  3VUR A;  3H1N A;  1E6B A;  6GSU A;  1K3L A;  2HRK A;  3FRC A;  3M0F A;  5FT3 A;  3MAK A;  12GS A;  1EOG A;  1GWC A;  5D9W A;  1YQ1 A;  1K0O A;  4KX4 A;  3IC8 A;  4QQ7 A;  1U87 A;  2VKZ G;  3UBK A;  1M0U A;  3AY8 A;  4ECJ A;  1YY7 A;  3KTL A;  3VI5 A;  1V40 A;  1BX9 A;  2PVQ A;  4Q5Q A;  4BVX A;  1JLW A;  5ECO B;  2C3N A;  3UAP A;  13GS A;  2GDR A;  3C8E A;  4HOJ A;  4IJI A;  5D9X A;  3P90 A;  1HQO A;  4F0C A;  2FNO A;  5J47 A;  3QAW A;  2R6K A;  5J4Y A;  3HJO A;  2EFE A;  2YV7 A;  3TOT A;  1GTU A;  5DDL A;  4EDZ A;  17GS A;  4F03 A;  4PQI A;  1IYH A;  2C3Q A;  2FHE A;  4L5O A;  4ZBA A;  2LJR A;  3PPU A;  3ZFB A;  1ML6 A;  5A5K A;  3IK9 A;  3LG6 A;  4ZB8 A;  2UV8 G;  3EE2 A;  4G19 A;  2R5G A;  3LFL A;  4KH7 A;  2PMT A;  1GNE A;  4IS0 A;  4KDU A;  4HJ2 A;  1EEM A;  5G5F A;  1XWG A;  4QMK A;  4PUR A;  14GS A;  1AXD A;  5EL8 A;  4TOP A;  1MTC A;  4G01 A;  4MPF A;  5DAL B;  4L8E A;  4CHS A;  5ECM B;  5LCZ A;  2ON7 A;  4J2F A;  5F05 A;  4G0K A;  4Q5N A;  1PL1 A;  1GTB A;  1GSS A;  2VCQ A;  1B8X A;  4IQ1 A;  4YAV A;  2GTU A;  6GSV A;  3R3E A;  3SWL A;  3VPQ A;  1EOH A;  2IMK A;  4WR4 A;  5EVO A;  2WB9 A;  2EFH A;  1GNW A;  4L5L A;  4G10 A;  4BVY A;  1IYI A;  4LMW A;  4RI7 A;  5ECR B;  1DUG A;  1VF2 A;  2F3M A;  2WS2 A;  1GSY A;  4ECC A;  2AHE A;  4MPG A;  5DJL A;  4BL7 B;  1N2A A;  3CSJ A;  5F8B A;  1K0B A;  4N0V A;  2PGT A;  1YEW C;  3GUR A;  3RFR C;  3W8S A;  3ERF A;  1AQV A;  1GUL A;  2ON5 A;  5ELA A;  5ECP B;  2C3T A;  5GZZ B;  3M8N A;  19GS A;  4JZQ A;  4Q5F A;  3ERG A;  3VK9 A;  4GLT A;  5FWG A;  2EFC A;  5IQY A;  1XW5 A;  2OT3 A;  1YDK A;  3PGT A;  3GTU B;  3F6D A;  3O76 A;  4MF6 A;  4BL7 A;  2R3X A;  1Y1U A;  1YKC A;  5BMU B;  2HSN B;  1Q4J A;  3QAV A;  4MP4 A;  3QR6 A;  4MF7 A;  2IMI A;  1VF3 A;  5F06 A;  1YJ6 A;  4I97 A;  2X64 A;  1PX6 A;  3FR6 A;  4KSM A;  3QAG A;  1K0C A;  1TXU A;  3KM6 A;  1MD4 A;  5ECL B;  4GDF A;  4GSS A;  1M99 A;  1ZL9 A;  2OAD A;  2D2Z A;  2V6K A;  5BMU A;  1B48 A;  2HSN A;  1VF1 A;  7GSS A;  2C4J A;  1EV4 A;  1R5A A;  22GS A;  4AI6 A;  4MK3 A;  1EV9 A;  4NAX A;  1PD2 1;  1U3I A;  2GSR A;  3TU3 B;  3LYP A;  3LSZ A;  4AKH A;  2J9H A;  3KJY A;  4ZXG A;  1C72 A;  1GTI A;  5A5H B;  1SVO A;  3P8W A;  1JLV A;  3FYG A;  1F3B A;  3VLN A;  4PQH A;  4ID0 A;  5LD0 A;  3VPT A;  1G7O A;  4E8H A;  3LXT A;  3I69 A;  2O5V A;  6GSW A;  1GUK A;  3LYK A;  2CAQ A;  1BYE A;  1A0F A;  4PXO A;  3CSI A;  3R2Q A;  3Q18 A;  4OFM A;  1RK4 A;  5A5H A;  2O3E A;  5A1N B;  2AAW A;  1I1I P;  4EDY A;  4ACS A;  4AGS A;  5ECQ B;  1KBN A;  2DC5 A;  2GLR A;  3CRU A;  4G9H A;  4MDC A;  5JCU A;  5ECS A;  2OAC A;  3EIN A;  4FQU A;  4KGI A;  5A4U A;  3MDK A;  1OYJ A;  1XWK A;  2CZ3 A;  4ISD A;  4K0G A;  1ZGN A;  2PBJ A;  4W66 A;  5A1N A;  1OE8 A;  4ZBB A;  3VWX A;  1GSE A;  4OMV A;  3PR8 A;  5AN1 A;  3LQ7 A;  3FR3 A;  4PI2 C;  1YVL A;  2C80 A;  2GST A;  2VCZ A;  1BF5 A;  2A2S A;  1UA5 A;  4KDX A;  3ISO A;  5ECH B;  4IVF A;  4AKX B;  3CRT A;  5EY6 A;  5DAL A;  2GSQ A;  3LJR A;  3Q19 A;  3GX0 A;  4FXY P;  2CZ2 A;  1TDI A;  4EC0 A;  2VO4 A;  2CA8 A;  4ZB9 A;  4YH2 A;  5DQS A;  3WYW A;  3KXO A;  1F2E A;  5D9T A;  2JL4 A;  4EXJ A;  4IKH A;  16GS A;  1USB A;  2CAI A;  3N9J A;  4G0I A;  1GTA A;  4KAE A;  3DGQ A;  5ECI B;  3FY7 A;  3GH6 A;  5DCG A;  1G6Y A;  2C8U A;  3IE3 A;  4ECI A;  5D73 A;  3IR4 A;  4RI6 A;  3KMO A;  1N25 A;  3G7J A;  4IQA A;  2OA7 A;  4O7H A;  1GSD A;  1K0D A;  3TGZ A;  3U6V A;  2WVY A;  1BG5 A;  2O36 A;  1PKZ A;  2WW2 A;  1TU8 A;  2YCD A;  3Q74 A;  4PTS A;  2N5F A;  1FHE A;  5B7C A;  10GS A;  1OKT A;  3GTU A;  1V2A A;  2CVD A;  2NTO A;  4ZB6 A;  3LXZ A;  4IW9 A;  11GS A;  5AIV A;  4PX1 A;  4PHZ C;  3NIV A;  3KMN A;  4F0B A;  3CBU A;  4KE3 A;  5J5N A;  4PNF A;  4G0L A;  4HZ4 A;  5ELG A;  1PL2 A;  2WRT A;  4BVX B;  5GSS A;  1S4B P;  3M1G A;  1PMT A;  1M9A A;  3ZMK A;  8GSS A;  1PX7 A;  4HI7 A;  2VCT A;  4E68 A;  3IBH A;  3WD6 A; 
#chains in the Genus database with same CATH homology
 3RFR C;  4PI0 C;  3RGB C;  3CHX C;  4PI2 C;  4PHZ C;  1YEW C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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