The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
241
|
structure length |
217
|
Chain Sequence |
ESVVDLRGMWIGLVLLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVTPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGTWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGLFGWMALGVFGVVLQILMRIHALVGKEGVKLLTE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Effects of zinc on particulate methane monooxygenase activity and structure.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
unknown peptide
|
| total genus |
79
|
| structure length |
217
|
| sequence length |
241
|
| chains with identical sequence |
G, K
|
| ec nomenclature |
ec
1.14.18.3: Methane monooxygenase (particulate). |
| pdb deposition date | 2014-05-07 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 | Particulate methane monooxygenase subunit c2. Chain: C |
#chains in the Genus database with same CATH superfamily 3RFR C; 4PI2 C; 3CHX C; 4PI0 C; 4PHZ C; 3RGB C; 1YEW C; #chains in the Genus database with same CATH topology 5D9W A; 1ZGN A; 2WRT A; 4NHW A; 3PR8 A; 4CHS A; 11GS A; 4BVX B; 2WW3 A; 3NIV A; 5BMU A; 1MD3 A; 2GSS A; 5DAK A; 3GX0 A; 3C8E A; 4YQU A; 2PBJ A; 2VO4 A; 3ISO A; 1N2A A; 5A34 B; 3WD6 A; 4JZQ A; 2H1L A; 2R4V A; 5B7C A; 2R3X A; 5AN1 A; 1MTC A; 1XW5 A; 1HNB A; 4JED A; 4BL7 B; 1PA3 A; 4QMK A; 4N0V A; 4G0I A; 5F06 A; 2R6K A; 1E6B A; 2HSN A; 4GLT A; 4MDC A; 1HNC A; 3R3E A; 2WVX B; 4GCI A; 3VI5 A; 5ECM B; 5A5H B; 5A4V A; 5ECL B; 3ZMK A; 3M0F A; 4Q5R A; 3HJM A; 3TOU A; 5GSS A; 3GTU B; 3KMO A; 1K3L A; 5ECQ B; 2FHE A; 1GWC A; 1A0F A; 1OKT A; 5LD0 A; 4ECJ A; 1GSE A; 5ELG A; 3RFR C; 3IR4 A; 2PVQ A; 5G5E A; 4EE0 A; 4OFT A; 6GSX A; 5A1N A; 1PX7 A; 2O3E A; 5J4Y A; 17GS A; 2EFH A; 4MK3 A; 1GSF A; 5EY6 A; 2WB9 A; 3TOT A; 3HMJ G; 1USB A; 2AB6 A; 1R5A A; 3QAG A; 2UV8 G; 6GST A; 1Y6E A; 1M0U A; 4KDU A; 4GST A; 2PMT A; 3EE2 A; 4ECB A; 3AY8 A; 4ECC A; 4IBP A; 3G7I A; 1YQ1 A; 3VUR A; 1K0N A; 4MPF A; 3FRC A; 1YDK A; 4YAV A; 3VPQ A; 1BG5 A; 4HZ2 A; 3LYK A; 1G6W A; 2GDR A; 2C80 A; 1GNE A; 1GUL A; 2WVY A; 1AQX A; 5J47 A; 1JLV A; 5D9V A; 3L0H A; 1GUH A; 5DQS A; 1FHE A; 3MAK A; 4L5O A; 3D0Z A; 2CVD A; 1PKW A; 1ML6 A; 4PXO A; 3GSS A; 4NHZ A; 2VCX A; 1XWK A; 5ECI B; 1HNA A; 5BMU B; 1B4P A; 3CWG A; 5HFK A; 5DAK B; 4YQV A; 1UA5 A; 4PHZ C; 2VCQ A; 2J9H A; 4O92 A; 1U3I A; 2D2Z A; 4QQ7 A; 2GTU A; 2VCV A; 2VD1 A; 1I1I P; 1YEW C; 2PGT A; 4HI7 A; 1GTU A; 2HQT A; 1AW9 A; 22GS A; 4GSN A; 1F3A A; 4OFN A; 4PI0 C; 2PER A; 1SVL A; 2HSN B; 2HRK A; 4PGT A; 3F6D A; 4KSM A; 4PQI A; 4DEJ A; 2IMK A; 3VPT A; 4L5L A; 1BYE A; 1YJ6 A; 4ZXG A; 5LCZ A; 1FW1 A; 8GSS A; 4E8E A; 4F03 A; 4GF0 A; 4OMV A; 5ECS A; 3IK7 A; 1V2A A; 3M3M A; 3ERG A; 5ECR B; 1DUG A; 2VD0 A; 3F6F A; 3KMN A; 4EDZ A; 1Y1U A; 4MF7 A; 2OT3 A; 2O5V A; 2CZ2 A; 2HRA A; 1PL1 A; 3GUS A; 2C4J A; 1S4B P; 19GS A; 5A1N B; 7GSS A; 1PD2 1; 1VF1 A; 3BBY A; 4MZW A; 3VI7 A; 3RGB C; 3QR6 A; 4YH2 A; 5D73 A; 2WW2 A; 3Q19 A; 5FT3 A; 5EVO A; 1GTA A; 4PQH A; 4EC0 A; 3I6A A; 5ECH B; 1AXD A; 3PPU A; 5F8B A; 5GZZ B; 2YCD A; 5ECP B; 2GSQ A; 3LXT A; 3KM6 A; 3FR3 A; 4KF9 A; 2R5G A; 2WJU A; 4G9H A; 4TOP A; 5ECO B; 3M1G A; 4PX1 A; 3KXO A; 2IL3 A; 4Q5Q A; 4ZBD A; 3R2Q A; 1K0B A; 2YV9 A; 4ZBB A; 2WZS A; 4MP4 A; 3MDK A; 3Q74 A; 3LSZ A; 3CSH A; 1AQW A; 3FR9 A; 2VKZ G; 2EFC A; 4F0B A; 4HZ4 A; 5AIV A; 5ECN B; 1C72 A; 1G6Y A; 2EFD A; 4HOJ A; 3VK9 A; 2JL4 A; 3W8S A; 1GLQ A; 1PX6 A; 4ZB6 A; 1PL2 A; 2OAD A; 1OE8 A; 4PNF A; 4O7H A; 2C3N A; 3IC8 A; 4NAX A; 3N5O A; 2HRK B; 4KDY A; 2HNL A; 4G19 A; 4K0G A; 4EDY A; 1LBK A; 4MF5 A; 3FY7 A; 2C3Q A; 3PGT A; 4RI6 A; 3ZFL A; 20GS A; 2LJR A; 2GSR A; 3ZML A; 4ZBA A; 1YVL A; 2UZ8 A; 3G7J A; 13GS A; 3UAR A; 4IS0 A; 2WDU A; 5G5F A; 3CRU A; 3IK9 A; 18GS A; 2NTO A; 1GTI A; 6GSV A; 4YQM A; 4J2F A; 5DAL A; 1AQV A; 6GSS A; 2WW1 A; 2YV7 A; 4KE3 A; 5J5N A; 3LQ7 A; 1G7O A; 4YAP A; 2DSA A; 2WW0 A; 3EIN A; 5AIS A; 4IEL A; 3P8W A; 4W66 A; 3UAP A; 2O36 A; 4KGI A; 4Q5N A; 4AKI A; 1IYI A; 4PUA A; 3FR6 A; 3UBK A; 1TW9 A; 5JCU A; 3P90 A; 3N9J A; 4RI7 A; 2N5F A; 4KDX A; 1VF2 A; 1Z9H A; 1VF4 A; 6GSY A; 1EV4 A; 4ZB7 A; 3SWL A; 3M8N A; 1K0O A; 3DGQ A; 1YY7 A; 4KAE A; 2V6K A; 3Q18 A; 1PKZ A; 5DJL A; 4FQU A; 4G0K A; 3LG6 A; 3RBT A; 5EL8 A; 4K0N A; 1YKC A; 4E8H A; 2GLR A; 3WYW A; 5DDL A; 1K3O A; 2OAC A; 1GSD A; 1K0M A; 4IVF A; 1TXU A; 2HSM A; 4IQA A; 1GNW A; 3KJY A; 1EOG A; 2CZ3 A; 1NHY A; 4ECI A; 3QAW A; 4PI2 C; 16GS A; 3GH6 A; 3UBL A; 2ON5 A; 1TU8 A; 4HJ2 A; 5A5K A; 5F05 A; 1U87 A; 4N3Z A; 3CSJ A; 5A4U A; 5ELA A; 1B8X A; 2CA8 A; 1GLP A; 5KEJ A; 3UVH A; 6GSW A; 4ZB9 A; 1JLW A; 3ERF A; 1HQO A; 12GS A; 4BVY A; 5J41 A; 2A2R A; 3QAV A; 1F3B A; 1GUK A; 5F07 A; 4AKG A; 4OFM A; 1OYJ A; 1B48 A; 1U88 A; 4USS A; 3CHX C; 1XW6 A; 4LMW A; 4MPG A; 4IW9 A; 5IQY A; 5A4W A; 4FXY P; 3HKR A; 5AIX A; 3CBU A; 3VWX A; 5F0G A; 1GSU A; 4F0C A; 1F2E A; 2F3M A; 1EEM A; 5DAL B; 4GDF A; 1TDI A; 4IKH A; 2CAQ A; 3KTL A; 3ZFB A; 1GSS A; 3I69 A; 3O76 A; 1MD4 A; 2GST A; 4BVX A; 2AHE A; 4EXJ A; 2VCT A; 4WR4 A; 4ZB8 A; 2A2S A; 9GSS A; 2AAW A; 6GSU A; 1LJR A; 4MF6 A; 1GUM A; 1IYH A; 3LJR A; 3LYP A; 2OA7 A; 5A34 A; 5J4U A; 5D9T A; 1PMT A; 1EOH A; 1GSQ A; 3LFL A; 4BL7 A; 1EV9 A; 4G10 A; 2IMI A; 1Q4J A; 2DC5 A; 4PTS A; 4I97 A; 4KH7 A; 5AGY A; 4GSS A; 3H1N A; 3FYG A; 2WVX A; 3VLN A; 3TU3 B; 5A5H A; 4G0L A; 3TGZ A; 4WR5 A; 2WS2 A; 2FNO A; 4AI6 A; 4ID0 A; 1SVM A; 5FWG A; 1BX9 A; 1K3Y A; 4IJI A; 3GTU A; 4PNG A; 2HSM B; 3HJO A; 4IGJ A; 5ECK B; 4JBB A; 1VF3 A; 3CRT A; 1BF5 A; 10GS A; 1M9A A; 4AKX B; 1GTB A; 1PGT A; 1RK4 A; 4AGS A; 4KX4 A; 4E68 A; 2WVZ A; 2VCZ A; 5DCG A; 5J4V A; 4L8E A; 14GS A; 5GST A; 3DD3 A; 3GST A; 4ISD A; 5JCW A; 1N25 A; 1M99 A; 3O3T A; 1KBN A; 1PN9 A; 2VCW A; 3IBH A; 1V40 A; 2F8F A; 1K0A A; 1GSY A; 4BVY B; 5DJM A; 5J40 A; 4IQ1 A; 2C3T A; 2X64 A; 2EFE A; 3F63 A; 3LXZ A; 5FHI A; 4GTU A; 4Q5F A; 1OE7 A; 3GUR A; 5D9X A; 1ZL9 A; 2C8U A; 1TU7 A; 1K0D A; 4ACS A; 3IE3 A; 1SVO A; 1JZR A; 1BAY A; 3CSI A; 1BG1 A; 2CAI A; 1XWG A; 2ON7 A; 4LMV A; 3U6V A; 4G01 A; 1K0C A; 4AKH A; 4PUR A; 1M9B A; #chains in the Genus database with same CATH homology 3RFR C; 4PI2 C; 3CHX C; 4PI0 C; 4PHZ C; 3RGB C; 1YEW C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
