4L1R | Genus

Total Genus 136

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	136
sequence length	622
structure length	608
Chain Sequence	DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNTIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 608 atoms

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608 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human herpesvirus 1
molecule keywords	Envelope glycoprotein B
total genus	136
structure length	608
sequence length	622
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-06-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00606	Glycoprotein_B	Herpesvirus Glycoprotein B ectodomain
A	PF17416	Glycoprot_B_PH1	Herpesvirus Glycoprotein B
A	PF17417	Glycoprot_B_PH2	Herpesvirus Glycoprotein B PH-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.29.100	Mainly Beta	Roll	PH-domain like	PH-domain like	4l1rA03
3.30.1450.20	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein; Chain:B, domain 1	Beta-lactamase Inhibitory Protein; Chain:B, domain 1	4l1rA01

4L1RA 4OSNA 4HSIA 3NWFA 3NWDA 3NW8A 2GUMA 3FVCA 3NWAA 4OT1A
chains in the Genus database with same CATH superfamily

2COAA 2RNRB 3X23A 4MT7A 2YT0A 1WVHA 5J3QA 1Y5OA 2N0YA 1LW3A 1LB1A 2Q13A 3KSYA 1WJ1A 5D3YA 3OHMB 1FOEA 2KUPA 2Z0PA 3QIJA 1FHXA 4HB0B 1EGXA 3NWFA 3NW8A 1U27A 3O96A 3TVVA 4CHJA 2LYDA 1MIXA 4HHVA 2RGNB 4L1RA 3PP2A 1AWEA 2I5FA 1MK9B 2Z0OA 5JHHA 1RRPB 2D9VA 3U7DA 1M7EA 3BINA 2B5RC 2DKQA 1P6SA 1E5WA 3D8FA 1OQNA 2P0HA 1DDWA 3HQCA 3ODXA 2LG1A 4YONA 4OT1A 1NTYA 3C4PB 4EMOA 3N4IB 1FB8A 1GC6A 2QKMA 1XR0B 1W1DA 3PVUA 2Y8FA 2LKOA 5D0OE 3WYFB 2GCLA 2K2UA 4KVGB 5DIFB 2HTHB 2LOZA 2Z4DA 2UVMA 4Y94A 2DKPA 3E2LC 3N7CA 4HDOA 2AEHA 2J59M 1WG7A 3M1IB 2UZRA 4KHOA 3KZ1A 3OANA 3C7UB 4ZRIA 3KRWA 2DX1A 3F0WA 2YRYA 3RCPA 2IFSA 5JP4A 2I1JA 4HSIA 5LONB 3G9WA 2MFQA 1EVHA 1WI1A 5J3YA 2IYBA 5DHAB 2NMBA 2G2UB 5L81A 3HSAA 1WJMA 5KCVA 1FHOA 4KHBA 2J0JA 3DXEA 2K8EA 2Y8GA 2VRWB 1I7AA 3F5RA 5HE3A 3ULCA 2VKIA 2D9WA 2KCJA 3PSCA 4NY0A 5J3TA 1Z87A 4F7HA 1U2BA 1SHCA 2DHJA 4KHBB 1PFJA 4GOUA 1ZM0A 3CIKA 3BJIA 4F7GA 4CHMA 4WJ7A 3CXBB 2H7DA 1IRSA 2K2JA 2D9ZA 2CRFA 1UPRA 1TJ6A 1BAKA 2KUQA 2Z13A 1U5GA 5DH9B 1FGZA 1Y19B 2MWNB 1MAIA 2D2QA 3TO1A 4PNKA 2CAYA 1X1GA 1X05A 4HAXB 2KIGA 1ZC3B 2L2IA 1N3HA 4IFSA 4A6FB 5KQ4A 2W2XD 4D0NB 3HK0A 2YH9A 1WGUA 4F7UP 4K17A 1ZYIA 4HDQA 5D3XA 4Z2NA 3TFMA 1DDVA 2D10A 3WA0A 1K5DB 2YT2A 4A5KA 3FM8C 3QWMA 1QQGA 4HB2B 3ODWA 3P7ZA 1J19A 1BTKA 3D8EA 1BWNA 2R0DA 2DYQA 1XXMC 5C5BA 3V5WA 4EKUA 4H8SA 3VIAA 1XX0A 2ELBA 3PVLA 2ROVA 1U5EA 1AQCA 1V88A 2DHIA 1H10A 4HAZB 3KRXA 2EMTA 2YVCA 2KM7A 2EJ8A 2ADZA 1V5MA 3A8PA 1U5FA 1KZGA 2QKLA 2RRFA 1ZSQA 1DYNA 2D9XA 1OMWA 2DLWA 1V89A 1QC6A 2CODA 3TCAA 5C5BB 3C4OB 3T06A 3PG7A 3SUZA 3DXCA 3UZTA 4MK0A 3E2KC 4C0AA 4HAWB 1NTVA 3FEHA 2KR0A 3QBVB 1FAOA 5LOPB 2DFKA 4QJ3B 4IAPA 3AU4A 5M4YB 4CYEA 1UEFA 2YS1A 4BBKA 1DDMA 2OQBA 3TW1A 1MKEA 4HB3B 4P7IA 3AU5A 3SO6A 3A8QA 1H4RA 5DI9B 4DM5A 5HE0A 2LULA 3D4EA 1V5PA 2NBVA 1T77A 2M38A 5D3VA 2YT1A 2G35A 3MDBC 2H7EA 2RVBB 4HATB 4HAUB 2DX5A 3ML4A 5D0QE 1M7RA 5GOWB 4DX8A 1UNQA 2Z0QA 4PQ0A 2PZ1A 2J0KA 2K49A 4ZRJA 3A58A 5I2SA 2CY4A 1XD4A 4A6FA 4GXBA 5CLLB 2N23A 1TXDA 2RUKB 2ZPYA 2ZKMX 3B77A 1JTGB 1FHWA 4A6HA 1WGQA 1W1GA 2W2XC 2YF0A 2YS3A 3SV1A 2J0MA 4TKNA 1UNPA 1W1HA 5IRSA 5AYWE 1PLSA 1DROA 1ZC4B 2EC1A 1X86A 4GMXB 4OSNA 4CSQA 2L1CA 1XKEA 2COFA 2GJYA 1XCGA 3FSSA 3PEGA 2X18A 4EJNA 1MIZB 3ULBA 2LOXA 4TYZA 2YS5A 2P0DA 2DN6A 5D27A 1BTNA 1MI1A 2JP2A 2MKRA 4B6HA 4Z2MB 1EAZA 2FJLA 1UPQA 3SNHA 2RSGA 3DCXA 5HE1A 4ZRKA 4K2OA 3ZDTA 2DYNA 2DHKA 1U29A 3GMUB 3DXDA 4XWXA 2E2XA 1NI2A 1X11A 2CY5A 2W2WA 5JHGA 2GS0A 3HW2B 3ODOA 2M14A 3IVFA 4QJ4B 1V61A 3PVWA 5I2MA 2BCJA 1RJ2A 4QXAB 5EFXA 4QJ5B 2MDXA 3P6AA 4K81A 4D6WA 5HE2A 3GYOA 1X1FA 2I1KA 2KXXA 1XODA 2KIEA 2R09A 1SGHA 2GUMA 2ELAA 1MPHA 1U5DA 4GMVA 4WVFB 4DBBA 2GCJA 1I2HA 2PXGA 1K5GB 4L6EA 4DXAB 1S0WC 4NSWA 2P0FA 4GN1A 4KAXB 3PZDA 2I5CA 3SYXA 2AL6A 1J0WA 5FI1A 2P8VA 3VOQA 1GG3A 5D3WA 5LG4B 1Q67A 3ZVRA 4YL8A 5JLJB 2DA0A 2XQNM 2D4QA 2VSZA 1TQZA 4KHAA 2G2WB 5C6RA 3AJ4A 1EF1A 2ROZB 2K00A 5FI0A 1KI1B 2Z14A 1ISNA 3NWDA 3U12A 4GZUA 2HE7A 4IOYX 5EKQE 1FGYA 1P5TA 1UNRA 3U8ZA 1MK7B 1PMSA 3MPXA 4GNKB 4HB4B 3HIEA 3C7VB 4MY6A 2DTCA 2R2YA 4GPTB 4WSFA 5C79A 5C16A 2Y7BA 4A6KA 2OTXA 5CLQB 4HAYB 1ZVRA 1OY2A 3FVCA 3NWAA 1GC7A 2RLOA 4HAVB 2Z59A 3D8DA 2COCA 1B55A 2V76A 2YSZA 2NZ8B 3GYPA 1V5UA 1NU2A 1DBHA 1P3RA 3KY9A 3NSUA 2D9YA 1KZ7A 3A98B 2KGXB 4DX90 3LJUX 4DIXA 5KQ1A 2UZSA 2FJUB 5DHFB 2D11A 2EMSA 4K2PA
chains in the Genus database with same CATH topology

4QJ3B 4D6WA 3GYOA 5M4YB 4QXAB 2KXXA 2KIEA 4KHBB 4GOUA 2GUMA 3OHMB 2GCJA 2PXGA 3NWFA 3NW8A 1S0WC 3TW1A 3TVVA 4DM5A 2KUQA 2Z13A 5LG4B 4L1RA 3D4EA 2NBVA 3TO1A 4KHAA 2G2WB 2KIGA 2B5RC 5D0QE 4IFSA 2Z14A 3NWDA 3U12A 4PQ0A 4IOYX 2YH9A 4OT1A 3C4PB 2K49A 5EKQE 3A58A 5I2SA 3N4IB 4Z2NA 1ZYIA 2ZKMX 1JTGB 5D0OE 4GNKB 2GCLA 2YT2A 3HIEA 3C7VB 2Z4DA 5IRSA 3E2LC 5AYWE 2R2YA 4OSNA 4CSQA 3FSSA 4KHOA 3C7UB 1XXMC 3FVCA 3NWAA 4HSIA 2Z59A 4Z2MB 2KM7A 3GYPA 2RRFA 2G2UB 3GMUB 3C4OB 4KHBA 2K8EA 4QJ4B 4DIXA 3E2KC 5I2MA 2KR0A 2FJUB 4QJ5B
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4L1R A;  4OSN A;  4HSI A;  3NWF A;  3NWD A;  3NW8 A;  2GUM A;  3FVC A;  3NWA A;  4OT1 A; 
#chains in the Genus database with same CATH topology
 2COA A;  2RNR B;  3X23 A;  4MT7 A;  2YT0 A;  1WVH A;  5J3Q A;  1Y5O A;  2N0Y A;  1LW3 A;  1LB1 A;  2Q13 A;  3KSY A;  1WJ1 A;  5D3Y A;  3OHM B;  1FOE A;  2KUP A;  2Z0P A;  3QIJ A;  1FHX A;  4HB0 B;  1EGX A;  3NWF A;  3NW8 A;  1U27 A;  3O96 A;  3TVV A;  4CHJ A;  2LYD A;  1MIX A;  4HHV A;  2RGN B;  4L1R A;  3PP2 A;  1AWE A;  2I5F A;  1MK9 B;  2Z0O A;  5JHH A;  1RRP B;  2D9V A;  3U7D A;  1M7E A;  3BIN A;  2B5R C;  2DKQ A;  1P6S A;  1E5W A;  3D8F A;  1OQN A;  2P0H A;  1DDW A;  3HQC A;  3ODX A;  2LG1 A;  4YON A;  4OT1 A;  1NTY A;  3C4P B;  4EMO A;  3N4I B;  1FB8 A;  1GC6 A;  2QKM A;  1XR0 B;  1W1D A;  3PVU A;  2Y8F A;  2LKO A;  5D0O E;  3WYF B;  2GCL A;  2K2U A;  4KVG B;  5DIF B;  2HTH B;  2LOZ A;  2Z4D A;  2UVM A;  4Y94 A;  2DKP A;  3E2L C;  3N7C A;  4HDO A;  2AEH A;  2J59 M;  1WG7 A;  3M1I B;  2UZR A;  4KHO A;  3KZ1 A;  3OAN A;  3C7U B;  4ZRI A;  3KRW A;  2DX1 A;  3F0W A;  2YRY A;  3RCP A;  2IFS A;  5JP4 A;  2I1J A;  4HSI A;  5LON B;  3G9W A;  2MFQ A;  1EVH A;  1WI1 A;  5J3Y A;  2IYB A;  5DHA B;  2NMB A;  2G2U B;  5L81 A;  3HSA A;  1WJM A;  5KCV A;  1FHO A;  4KHB A;  2J0J A;  3DXE A;  2K8E A;  2Y8G A;  2VRW B;  1I7A A;  3F5R A;  5HE3 A;  3ULC A;  2VKI A;  2D9W A;  2KCJ A;  3PSC A;  4NY0 A;  5J3T A;  1Z87 A;  4F7H A;  1U2B A;  1SHC A;  2DHJ A;  4KHB B;  1PFJ A;  4GOU A;  1ZM0 A;  3CIK A;  3BJI A;  4F7G A;  4CHM A;  4WJ7 A;  3CXB B;  2H7D A;  1IRS A;  2K2J A;  2D9Z A;  2CRF A;  1UPR A;  1TJ6 A;  1BAK A;  2KUQ A;  2Z13 A;  1U5G A;  5DH9 B;  1FGZ A;  1Y19 B;  2MWN B;  1MAI A;  2D2Q A;  3TO1 A;  4PNK A;  2CAY A;  1X1G A;  1X05 A;  4HAX B;  2KIG A;  1ZC3 B;  2L2I A;  1N3H A;  4IFS A;  4A6F B;  5KQ4 A;  2W2X D;  4D0N B;  3HK0 A;  2YH9 A;  1WGU A;  4F7U P;  4K17 A;  1ZYI A;  4HDQ A;  5D3X A;  4Z2N A;  3TFM A;  1DDV A;  2D10 A;  3WA0 A;  1K5D B;  2YT2 A;  4A5K A;  3FM8 C;  3QWM A;  1QQG A;  4HB2 B;  3ODW A;  3P7Z A;  1J19 A;  1BTK A;  3D8E A;  1BWN A;  2R0D A;  2DYQ A;  1XXM C;  5C5B A;  3V5W A;  4EKU A;  4H8S A;  3VIA A;  1XX0 A;  2ELB A;  3PVL A;  2ROV A;  1U5E A;  1AQC A;  1V88 A;  2DHI A;  1H10 A;  4HAZ B;  3KRX A;  2EMT A;  2YVC A;  2KM7 A;  2EJ8 A;  2ADZ A;  1V5M A;  3A8P A;  1U5F A;  1KZG A;  2QKL A;  2RRF A;  1ZSQ A;  1DYN A;  2D9X A;  1OMW A;  2DLW A;  1V89 A;  1QC6 A;  2COD A;  3TCA A;  5C5B B;  3C4O B;  3T06 A;  3PG7 A;  3SUZ A;  3DXC A;  3UZT A;  4MK0 A;  3E2K C;  4C0A A;  4HAW B;  1NTV A;  3FEH A;  2KR0 A;  3QBV B;  1FAO A;  5LOP B;  2DFK A;  4QJ3 B;  4IAP A;  3AU4 A;  5M4Y B;  4CYE A;  1UEF A;  2YS1 A;  4BBK A;  1DDM A;  2OQB A;  3TW1 A;  1MKE A;  4HB3 B;  4P7I A;  3AU5 A;  3SO6 A;  3A8Q A;  1H4R A;  5DI9 B;  4DM5 A;  5HE0 A;  2LUL A;  3D4E A;  1V5P A;  2NBV A;  1T77 A;  2M38 A;  5D3V A;  2YT1 A;  2G35 A;  3MDB C;  2H7E A;  2RVB B;  4HAT B;  4HAU B;  2DX5 A;  3ML4 A;  5D0Q E;  1M7R A;  5GOW B;  4DX8 A;  1UNQ A;  2Z0Q A;  4PQ0 A;  2PZ1 A;  2J0K A;  2K49 A;  4ZRJ A;  3A58 A;  5I2S A;  2CY4 A;  1XD4 A;  4A6F A;  4GXB A;  5CLL B;  2N23 A;  1TXD A;  2RUK B;  2ZPY A;  2ZKM X;  3B77 A;  1JTG B;  1FHW A;  4A6H A;  1WGQ A;  1W1G A;  2W2X C;  2YF0 A;  2YS3 A;  3SV1 A;  2J0M A;  4TKN A;  1UNP A;  1W1H A;  5IRS A;  5AYW E;  1PLS A;  1DRO A;  1ZC4 B;  2EC1 A;  1X86 A;  4GMX B;  4OSN A;  4CSQ A;  2L1C A;  1XKE A;  2COF A;  2GJY A;  1XCG A;  3FSS A;  3PEG A;  2X18 A;  4EJN A;  1MIZ B;  3ULB A;  2LOX A;  4TYZ A;  2YS5 A;  2P0D A;  2DN6 A;  5D27 A;  1BTN A;  1MI1 A;  2JP2 A;  2MKR A;  4B6H A;  4Z2M B;  1EAZ A;  2FJL A;  1UPQ A;  3SNH A;  2RSG A;  3DCX A;  5HE1 A;  4ZRK A;  4K2O A;  3ZDT A;  2DYN A;  2DHK A;  1U29 A;  3GMU B;  3DXD A;  4XWX A;  2E2X A;  1NI2 A;  1X11 A;  2CY5 A;  2W2W A;  5JHG A;  2GS0 A;  3HW2 B;  3ODO A;  2M14 A;  3IVF A;  4QJ4 B;  1V61 A;  3PVW A;  5I2M A;  2BCJ A;  1RJ2 A;  4QXA B;  5EFX A;  4QJ5 B;  2MDX A;  3P6A A;  4K81 A;  4D6W A;  5HE2 A;  3GYO A;  1X1F A;  2I1K A;  2KXX A;  1XOD A;  2KIE A;  2R09 A;  1SGH A;  2GUM A;  2ELA A;  1MPH A;  1U5D A;  4GMV A;  4WVF B;  4DBB A;  2GCJ A;  1I2H A;  2PXG A;  1K5G B;  4L6E A;  4DXA B;  1S0W C;  4NSW A;  2P0F A;  4GN1 A;  4KAX B;  3PZD A;  2I5C A;  3SYX A;  2AL6 A;  1J0W A;  5FI1 A;  2P8V A;  3VOQ A;  1GG3 A;  5D3W A;  5LG4 B;  1Q67 A;  3ZVR A;  4YL8 A;  5JLJ B;  2DA0 A;  2XQN M;  2D4Q A;  2VSZ A;  1TQZ A;  4KHA A;  2G2W B;  5C6R A;  3AJ4 A;  1EF1 A;  2ROZ B;  2K00 A;  5FI0 A;  1KI1 B;  2Z14 A;  1ISN A;  3NWD A;  3U12 A;  4GZU A;  2HE7 A;  4IOY X;  5EKQ E;  1FGY A;  1P5T A;  1UNR A;  3U8Z A;  1MK7 B;  1PMS A;  3MPX A;  4GNK B;  4HB4 B;  3HIE A;  3C7V B;  4MY6 A;  2DTC A;  2R2Y A;  4GPT B;  4WSF A;  5C79 A;  5C16 A;  2Y7B A;  4A6K A;  2OTX A;  5CLQ B;  4HAY B;  1ZVR A;  1OY2 A;  3FVC A;  3NWA A;  1GC7 A;  2RLO A;  4HAV B;  2Z59 A;  3D8D A;  2COC A;  1B55 A;  2V76 A;  2YSZ A;  2NZ8 B;  3GYP A;  1V5U A;  1NU2 A;  1DBH A;  1P3R A;  3KY9 A;  3NSU A;  2D9Y A;  1KZ7 A;  3A98 B;  2KGX B;  4DX9 0;  3LJU X;  4DIX A;  5KQ1 A;  2UZS A;  2FJU B;  5DHF B;  2D11 A;  2EMS A;  4K2P A; 
#chains in the Genus database with same CATH homology
 4QJ3 B;  4D6W A;  3GYO A;  5M4Y B;  4QXA B;  2KXX A;  2KIE A;  4KHB B;  4GOU A;  2GUM A;  3OHM B;  2GCJ A;  2PXG A;  3NWF A;  3NW8 A;  1S0W C;  3TW1 A;  3TVV A;  4DM5 A;  2KUQ A;  2Z13 A;  5LG4 B;  4L1R A;  3D4E A;  2NBV A;  3TO1 A;  4KHA A;  2G2W B;  2KIG A;  2B5R C;  5D0Q E;  4IFS A;  2Z14 A;  3NWD A;  3U12 A;  4PQ0 A;  4IOY X;  2YH9 A;  4OT1 A;  3C4P B;  2K49 A;  5EKQ E;  3A58 A;  5I2S A;  3N4I B;  4Z2N A;  1ZYI A;  2ZKM X;  1JTG B;  5D0O E;  4GNK B;  2GCL A;  2YT2 A;  3HIE A;  3C7V B;  2Z4D A;  5IRS A;  3E2L C;  5AYW E;  2R2Y A;  4OSN A;  4CSQ A;  3FSS A;  4KHO A;  3C7U B;  1XXM C;  3FVC A;  3NWA A;  4HSI A;  2Z59 A;  4Z2M B;  2KM7 A;  3GYP A;  2RRF A;  2G2U B;  3GMU B;  3C4O B;  4KHB A;  2K8E A;  4QJ4 B;  4DIX A;  3E2K C;  5I2M A;  2KR0 A;  2FJU B;  4QJ5 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4L1RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations