The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
49
|
sequence length |
141
|
structure length |
141
|
Chain Sequence |
DVAGLVPCKDSPAFQKRAAAAVNTTADPASGQKRFERYSQALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Three-dimensional Structure of Cyanobacterial Photosystem I at 2.5 A Resolution
pubmed doi rcsb |
| molecule keywords |
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1
|
| molecule tags |
Photosynthesis
|
| total genus |
49
|
| structure length |
141
|
| sequence length |
141
|
| ec nomenclature | |
| pdb deposition date | 2001-06-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| F | PF02507 | PSI_PsaF | Photosystem I reaction centre subunit III |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | Photosystem I PsaF, reaction centre subunit III |
#chains in the Genus database with same CATH superfamily 3LW5 F; 4XK8 F; 2WSC F; 1JB0 F; 2O01 F; 2WSE F; 4RKU F; 4KT0 F; 4Y28 F; 5L8R F; 2WSF F; 4L6V 6; #chains in the Genus database with same CATH topology 3KW6 A; 4WW0 A; 2EA0 A; 1MU5 A; 2ERC A; 3GPU A; 5EXP A; 2LVQ D; 4JI8 M; 1VDL A; 2Z8Y M; 1WGN A; 2R4J A; 4NOO B; 3GLF A; 2VF7 A; 2X4A A; 3E46 A; 5KQ8 A; 2UXC M; 5C1B A; 1K3W A; 2JZ1 A; 3MMP A; 2VDB B; 3KP1 E; 1DGG A; 3PVS A; 1N36 M; 1L2B A; 3LQQ A; 4IBG A; 1GL6 A; 2XZF A; 3K8Z A; 1G41 A; 3L25 A; 4OU7 A; 1W5T A; 2LVA A; 1R2Z A; 4B3R M; 1PJJ A; 1IM2 A; 3GO8 A; 4OX9 M; 4UN2 B; 4AI6 A; 1NJG A; 4BB9 A; 2DZN B; 3V76 A; 4L78 A; 2EJS A; 4HL4 A; 1QAN A; 4YY3 M; 1YLA A; 3NWL A; 5EQT A; 4LF6 M; 4DUY M; 3VK8 A; 1IN6 A; 2DWZ B; 5FTL A; 1HQC A; 1G3I A; 3U6M A; 3B7Q A; 1N34 M; 4ZPX A; 4IBI A; 2L6O A; 1TH2 A; 4G4N A; 1OIP A; 1PJI A; 1HNW M; 4HEO A; 4KHP M; 1TF0 B; 3VDU A; 4MGK E; 4CHT B; 2GNO A; 4LZJ A; 2N35 A; 3SAS A; 1FNN A; 2A5Y B; 5BPV A; 4M9Z A; 4G4Q A; 2C5R A; 3WHL A; 1T6O A; 3LCV B; 4X66 M; 2BJV A; 2P5T A; 3I4Y A; 1IQP A; 4GIP A; 2YNM D; 2CUZ A; 3L29 A; 1KYI A; 1NJF A; 3DOA A; 2K47 A; 2X49 A; 3AKZ A; 4MGZ E; 2QP9 X; 4IBB A; 2F5O A; 1NNU C; 3M0E A; 3FYD A; 5F3W A; 3EIE A; 4OVZ A; 4LJ7 A; 4DR4 M; 3J2P B; 1OFH A; 2KRK A; 3LW5 F; 3H4M A; 4REZ A; 2KNA A; 2F4V M; 2ZAO A; 3VDP A; 3UK6 A; 3GP1 A; 1XMO M; 3KOY E; 3SAU A; 3HKP A; 3ZQJ A; 4GHA A; 3HJS A; 3AV0 A; 4D80 A; 2AHM A; 1D2N A; 1Z5C A; 3FYC A; 4MGY E; 4NL4 H; 1N33 M; 2UUA M; 3F92 A; 4CJ6 A; 4JYA M; 3GQ5 A; 2KRU A; 2C9O A; 2L4E A; 3M6A A; 1GO5 A; 1VDD A; 2XFS A; 3QAU A; 1IY0 A; 3DZD A; 4B7H A; 3I04 M; 1G59 A; 3GLG B; 1YUB A; 2VQF M; 2APL A; 2O01 F; 3U61 A; 1ZMV A; 3TE6 A; 1I94 M; 4JI3 M; 3GRU A; 2UUC M; 3FTE A; 1J09 A; 4NSO B; 3I51 A; 4D82 A; 2LVN C; 2DNA A; 2D7H A; 2F5Q A; 1Q02 A; 3RFW A; 3LMM A; 4DR2 M; 2R18 A; 3J7A S; 3NBX X; 3LVV A; 4MGH A; 2XSZ A; 1GKI A; 1WHC A; 4YHH M; 1UFZ A; 3CTW B; 4CIS A; 4I4L A; 3I4V A; 2KEB A; 5ITY A; 1R5L A; 1Y8G A; 4P17 A; 3FTC A; 5IZ7 D; 1PRB A; 1ZQ9 A; 3HU2 A; 1QAM A; 4L15 A; 3R9X B; 4B3S M; 3K1J A; 4LJ6 A; 3UMM A; 3U6Q A; 3U60 A; 2KZS A; 3L2A A; 3GLG E; 1PJS A; 2M60 A; 1MN3 A; 1QYR A; 2EKK A; 2KA6 B; 2J7N A; 2HWJ A; 2XH9 A; 2Y20 A; 4W5W A; 5FTN A; 1IFY A; 1SXJ D; 4JN6 A; 1IY1 A; 3HY5 A; 4DV0 M; 2DKL A; 3SMS A; 2Z3X A; 4LG2 A; 1N78 A; 1WXQ A; 2L4F A; 1SXJ B; 4A3V B; 1L8Q A; 1TTE A; 2CHG A; 4OW0 A; 1E9R A; 2Z4S A; 3KS4 A; 4LJ9 A; 3W0L B; 2DWM A; 5DFL A; 2V1U A; 1XXH E; 1C7Y A; 4GKJ M; 4Z8X A; 4MB7 A; 3HU3 A; 1Z5A A; 2DAE A; 3GLI B; 1QZE A; 2H1R A; 3B7Z A; 3U6C A; 1QUS A; 4D81 A; 3U61 B; 4JI6 M; 3KFU G; 1SG9 A; 1KSF X; 2BNK A; 5EJC A; 1IXZ A; 4G3O A; 2ZTD A; 4AQY M; 2QEN A; 2MGW A; 2HL7 A; 4IIW A; 2LVO C; 4LRT A; 4NXN M; 1VEJ A; 4I5S A; 3U5Z A; 1I4W A; 4ANR A; 1D0M A; 2OOB A; 4NXM M; 1N32 M; 2OOA A; 1C1K A; 5KQD A; 1NY5 A; 1QAQ A; 2YR0 A; 3KOW E; 4KT0 F; 4BBA A; 5IWA M; 1IBL M; 1ZV1 A; 4LF5 M; 4GC5 A; 3PXG A; 1V33 A; 2DAM A; 2FOI C; 4DV6 M; 1N77 A; 2KXE A; 4G4O A; 1IXS A; 1WR1 B; 3NBI A; 4PDI A; 3SHG B; 4G4R A; 4WP2 A; 1AIP C; 3ZC7 B; 3LCU A; 1HNZ M; 1Z59 A; 5E6J A; 3CF0 A; 2K0B X; 4M0D A; 1D0K A; 4DV5 M; 2XEP A; 5ITX E; 3C3D A; 3SYL A; 4RF1 A; 2FH0 A; 2KDL A; 4FCW A; 2G8L A; 2KHH A; 5FTM A; 1Z6T A; 2C99 A; 1N75 A; 2FE8 A; 2WSE F; 4PT5 A; 2OQ4 A; 3HGI A; 1RU3 A; 2XZU A; 2DWN A; 3L28 A; 3GPY A; 1E94 E; 4PCZ A; 1SXJ C; 4DV7 M; 4R71 A; 1JB0 F; 2L09 A; 1S3S A; 4I81 A; 2G3Q A; 2WZJ A; 1X37 A; 4I8O A; 1IN8 A; 3WHK A; 3GLF B; 5EXT A; 2LXE A; 3PFI A; 2K9D A; 3GPP A; 2QBY A; 4DR1 M; 1NVM A; 2QZ4 A; 4FCT A; 4IBF A; 4FWD A; 4IJF A; 3TQS A; 1ZMW A; 2L2D A; 4MM3 B; 3HHZ A; 1JQJ C; 5L8R F; 3U6S A; 3A98 B; 4DV2 M; 3GLH A; 3FRI A; 4DBG B; 4GEW A; 3KVW A; 4B3T M; 3HJQ A; 4II7 A; 1DV0 A; 1XHB A; 5DYI A; 2MH8 A; 1R2Y A; 4GKK M; 2LHG A; 1QZM A; 4L6V 6; 3ZH9 B; 1OFI A; 4XBO A; 3L27 A; 2ZM6 M; 3FTF A; 2LWX A; 2QPA A; 1IN5 A; 1MJG M; 1VQ1 A; 4DR7 M; 5EP1 A; 1V34 A; 4ITQ A; 4DV4 M; 3ZCB B; 3GQ3 A; 1H6U A; 1JR3 A; 5EP4 A; 1HT2 E; 2VII A; 1NHG C; 3TWL A; 1J7K A; 2CWB A; 3C58 A; 1XWI A; 4L8R C; 3JR4 A; 4WUR A; 1KFV A; 4M9S A; 3RE8 A; 1EE8 A; 4IBD A; 1DGH A; 2DEN A; 4AG6 A; 1XXH A; 2QQ8 A; 5FTK A; 4FWG A; 5DNY A; 3U6D A; 1QDT A; 4GIT A; 4LCB A; 3J81 S; 3U6O A; 3W0F A; 3W67 A; 4LFA M; 4LJA A; 2MRO B; 4RKU F; 5JI3 E; 3FKE A; 3FUT A; 2WSF F; 1OJL A; 3GRV A; 4MGI E; 4RF0 A; 5FSW A; 5KPZ A; 1HNX M; 4JI1 M; 4JV5 M; 4X62 M; 1MX0 A; 1DO2 A; 4M9X A; 2CV1 A; 2CHQ A; 2JY6 B; 1HQY E; 3M7G A; 4OVZ B; 1Q3B A; 4X64 M; 2CHV A; 3SMP A; 1GVN A; 2O25 A; 1IXR C; 1L2C A; 3CGW A; 3FD9 A; 3L26 A; 2DHR A; 1T3T A; 2ZBK B; 2RKO A; 1NY6 A; 2LBC A; 3GRR A; 3THG A; 3U6E A; 4XK8 F; 3U6P A; 2BWB A; 2R4E A; 5JI2 E; 1IBM M; 1ORY B; 3AOE A; 3FUX A; 1VG5 A; 3KP0 E; 2VQE M; 2C96 A; 1QVR A; 5EXX A; 3VLF B; 2RRU A; 2HHH M; 4RNA A; 1GAB A; 1TR8 A; 2FNA A; 1A5T A; 3CF2 A; 2DHY A; 2J5Y A; 4L4U A; 4R7G A; 1XC8 A; 1IBK M; 2Z4R A; 2LH0 A; 3HU1 A; 3TWM A; 4KO8 A; 2BWE A; 5KPT A; 1QDR A; 2EO2 A; 3D8B A; 4AW4 A; 1Q39 A; 3KOX E; 1L2D A; 1R7R A; 2XLJ A; 2UXB M; 3DFZ A; 1GLN A; 5FTJ A; 3BOS A; 1BVS A; 1K3X A; 3SAV A; 1QUT A; 2XSZ D; 4LJ5 A; 4K0K M; 2V1C A; 4QOZ C; 2I7P A; 4F1I A; 5ITU A; 2CV0 A; 3FE3 A; 3TWK A; 1Z5B A; 4LF4 M; 4DUZ M; 3HHY A; 4AG5 A; 1W5S A; 1OKS A; 1WJ7 A; 4B08 A; 3A45 A; 2R6F A; 3HX3 A; 3E21 A; 3E4R A; 3B89 A; 3KSX A; 4IBE A; 3K9O A; 4DR3 M; 3UGJ A; 3T6P A; 1NV9 A; 3H4J A; 1E32 A; 4DV1 M; 3U60 B; 1G71 A; 1OIZ A; 1YSY A; 3QYE A; 2JY7 A; 3LVW A; 4LJ4 A; 3SAR A; 2KW0 A; 4LF8 M; 3FUU A; 3I01 M; 2DXI A; 3FRH A; 5H37 D; 1SXJ E; 1OQY A; 1IN4 A; 1V92 A; 3FUW A; 3HWS A; 5E26 A; 1L1Z A; 1CUK A; 1NV8 A; 2DZO B; 3IEC A; 1IY2 A; 2ZAM A; 4BLC A; 2QNJ A; 7CAT A; 3EIH A; 1J5E M; 8CAT A; 2QCU A; 3UJN A; 3GLI E; 3VFD A; 5BR8 M; 3HJ8 A; 3J80 S; 5ITQ A; 1ZMU A; 1TDH A; 4LZZ A; 2JY5 A; 3TL4 X; 2XF3 A; 1XMQ M; 3SC3 A; 1FJG M; 4AKI A; 1GJS A; 4LGY A; 3GPX A; 2OO9 A; 3HZJ A; 4M0W A; 2DZL A; 3JR5 A; 5FLX S; 2DVW B; 4FD2 A; 1PGY A; 2CRU A; 3RGS A; 4DV3 M; 4LFC M; 4IBC A; 3U5Z B; 1D0L A; 3PNV A; 4NC6 A; 2DAI A; 4G6Z A; 1XB2 B; 4QOS A; 5LMU M; 2HAK A; 3D8L A; 5IT9 S; 4IBK A; 3ILK A; 5C18 A; 2VF8 A; 3HHW A; 1WIV A; 5ITT A; 1VEK A; 4TUW A; 1NO1 A; 2CV2 A; 1IXS B; 2J7O A; 2UUB M; 2LNH C; 2FS1 A; 3K92 A; 2UU9 M; 5IRE B; 2QHO B; 3CF6 E; 4Q7J A; 2L7I A; 3C9P A; 3GLG A; 2KNV A; 2R65 A; 3BBZ A; 3QYB A; 4FWH A; 4CIZ A; 2JY8 A; 4LF7 M; 2DAK A; 3IG5 A; 3DA1 A; 3QWL A; 4F2L A; 1DGF A; 4PD2 A; 1AUA A; 2R46 A; 2R45 A; 1P3Q Q; 2YFQ A; 3A46 A; 3C3E A; 3IG8 A; 3AOE C; 2L7H A; 5DYG A; 2MR9 A; 4JI0 M; 2ZTC A; 3SBJ A; 2C98 A; 2DWL A; 1HR0 M; 3KSJ A; 4JXJ A; 4LJ8 A; 4JI7 M; 1GJT A; 3Q8G A; 4B7G A; 1TH4 A; 3GRY A; 4LFB M; 1ZAE A; 3SHF A; 3HHX A; 4Y28 F; 2JP7 A; 1YE9 A; 4HLQ A; 1Q3C A; 3W68 A; 2LVP C; 3Q8X A; 3GLF E; 2F5P A; 2I7N A; 1G4A E; 4FW9 A; 1NHW C; 1R4G A; 2D7E A; 4JI2 M; 2R62 A; 2MJ5 B; 3UZU A; 2RGO A; 2QBY B; 2R0I A; 4QHS A; 2DAG A; 2XFT A; 2YQZ A; 1NSF A; 4QHT A; 2F5S A; 2EUC A; 3A42 A; 3J7B A; 3MK6 A; 3AJI B; 3GLH B; 4GC9 A; 3RGP A; 3T1Y M; 2X8A A; 1HT1 E; 3VK7 A; 3T38 A; 2XGN A; 3AFH A; 1VEG A; 4CGY B; 3K9P A; 2BJW A; 4NRV A; 2JWS A; 4MH0 E; 3SYK A; 5KO3 A; 2W82 A; 2R44 A; 2CE7 A; 3K2L A; 3SFZ A; 3U6L A; 1JR3 D; 1SXJ A; 2V6Z M; 4LRS A; 3AL0 C; 4XGI A; 4JI4 M; 3FTD A; 1K82 A; 2Y0T A; 2E5L M; 1TDZ A; 3B7N A; 4LGM A; 2EKF A; 4QNM A; 1OAI A; 4PDG A; 2NQ8 C; 4R3D A; 1F4I A; 2Y21 A; 4S12 A; 3VKH A; 3GLI A; 3B74 A; 2CP8 A; 3B9P A; 3FUV A; 3PNY A; 2F5N A; 1XNQ M; 1DGB A; 1DGH B; 4KLN A; 5ITX A; 1XXH B; 3SAW A; 4AZF A; 1PJQ A; 1QAO A; 2DI0 A; 2ZAN A; 1R6B X; 1DO0 A; 4B7F A; 4GH9 A; 2HKJ A; 5EP2 A; 1XNR M; 4JI5 M; 2KZU A; 1G8P A; 3T1H M; 5GKN A; 3KXE C; 1PM5 A; 2O5R A; 2D7G A; 3TPZ A; 3BXW A; 3T15 A; 2JNH A; 3KS8 A; 3GLH E; 2LHC A; 1NNJ A; 2FFJ A; 4DR6 M; 1WGL A; 1E9S A; 4NSR A; 2B3T A; 3KOZ E; 2Y0Q A; 1TGU A; 3MJ5 A; 2GQF A; 4L16 A; 3IHP A; 5A2Q S; 4LF9 M; 4GHL A; 2CFO A; 1LTM A; 4AKG A; 2JXN A; 4GMQ A; 4IBJ A; 4KOD A; 4DR5 M; 3MHV C; 2JZ0 A; 2JA2 A; 4IJE A; 3OTO M; 1PJT A; 3KDS E; 1OAO C; 2HCB A; 4QNR A; 1OTR A; 2LTU A; 5ITR A; 2CEA A; 1JR3 E; 2WSC F; 3JAM S; 1UM8 A; 4P16 A; 1QQW A; 3E9S A; 3VKG A; 2C9C A; 1HJP A; 2H5X A; 1GL7 A; 2QSF X; 5EP3 A; 4Z6Y A; 1L1T A; 2Z7J A; 4GRI A; 5EXS A; 5KPR A; 1LV7 A; 4LY6 A; 1EFU B; 4FCV A; 4B3M M; 4NRW A; 1EIJ A; 2KNZ A; 4FVM A; 1TH3 A; 2JUJ A; 3AOG A; 2Q2E B; 3GQ4 A; 3R8F A; 4AKH A; 3SAT A; 4X65 M; 2OPF A; 2UXD M; 3J27 B; 2M5Z A; 4EIW A; 5LMN M; 2RGH A; 1IN7 A; 2G5G X; 3LQR A; 1T43 A; 2K6B A; #chains in the Genus database with same CATH homology 3LW5 F; 4XK8 F; 2WSC F; 1JB0 F; 2O01 F; 2WSE F; 4RKU F; 4KT0 F; 4Y28 F; 5L8R F; 2WSF F; 4L6V 6;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
