The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
360
|
structure length |
214
|
Chain Sequence |
SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a
pubmed doi rcsb |
molecule tags |
Replication
|
source organism |
Homo sapiens
|
molecule keywords |
UV excision repair protein RAD23 homolog A
|
total genus |
51
|
structure length |
214
|
sequence length |
360
|
ec nomenclature | |
pdb deposition date | 2003-09-16 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00240 | ubiquitin | Ubiquitin family |
A | PF00627 | UBA | UBA/TS-N domain |
A | PF09280 | XPC-binding | XPC-binding domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | DNA helicase RuvA subunit, C-terminal domain | ||
Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | DNA helicase RuvA subunit, C-terminal domain | ||
Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | XPC-binding domain | ||
Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 |