The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
116
|
structure length |
116
|
Chain Sequence |
MDPELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution Structure and Dynamics of S. cerevisiae PDCD5-like Protein Ymr074cp Determined by Heteronuclear NMR Spectroscopy
rcsb |
| molecule keywords |
Uncharacterized protein YMR074C
|
| molecule tags |
Unknown function
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
25
|
| structure length |
116
|
| sequence length |
116
|
| ec nomenclature | |
| pdb deposition date | 2007-11-23 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | PDCD5-like |
#chains in the Genus database with same CATH superfamily 1EIJ A; 2CRU A; 2K6B A; 2FH0 A; 2JXN A; #chains in the Genus database with same CATH topology 4LZZ A; 2HHH M; 1OAO C; 2H5X A; 5IRE B; 4XBO A; 3GQ3 A; 4DR5 M; 4XK8 F; 3VLF B; 2D7E A; 4GRI A; 4GHA A; 3AOG A; 5KQD A; 4G4N A; 4AKH A; 2FS1 A; 1V92 A; 2JY6 B; 2WSF F; 3KS4 A; 2UU9 M; 1WGN A; 1GAB A; 1VEJ A; 5DYG A; 2VF8 A; 2DWM A; 4DR3 M; 1R2Z A; 2UXC M; 1J09 A; 1GKI A; 3SYL A; 4JI8 M; 5EJC A; 5E26 A; 3HHW A; 4IBD A; 1NY5 A; 1FNN A; 2J5Y A; 2XGN A; 3BOS A; 3KVW A; 3TL4 X; 4B7G A; 2CRU A; 1D0L A; 2D7G A; 4DV1 M; 4OU7 A; 2JY8 A; 4DV7 M; 3RGS A; 2L6O A; 1HT1 E; 3ILK A; 3GLF E; 2OPF A; 1IY2 A; 5EQT A; 2V1U A; 5JI2 E; 1AIP C; 1G41 A; 2JUJ A; 1C1K A; 2DKL A; 3HY5 A; 5JI3 E; 4DV6 M; 1XC8 A; 2VQE M; 2XFS A; 4I5S A; 3T1Y M; 1E9R A; 1Q39 A; 1I4W A; 2KEB A; 2LH0 A; 5KPR A; 3FE3 A; 3M7G A; 1D0K A; 3HJQ A; 3GPU A; 2G8L A; 4NC6 A; 2DHY A; 2XLJ A; 2MGW A; 2R0I A; 5FLX S; 3J2P B; 4M9Z A; 4NL4 H; 1VQ1 A; 1Q02 A; 1SXJ B; 4RNA A; 4B3T M; 2GQF A; 1VG5 A; 2QQ8 A; 3FRI A; 2LVP C; 3I4Y A; 4FW9 A; 1D2N A; 4AZF A; 4B7F A; 4DV3 M; 3HHZ A; 2F5N A; 1XNR M; 2KRK A; 3GPY A; 4QNR A; 2DWZ B; 3L2A A; 2N35 A; 3GLF B; 3U61 A; 3K9P A; 4NRW A; 2O25 A; 4X62 M; 3U6Q A; 1XXH E; 4LRS A; 1CUK A; 4GC5 A; 3TE6 A; 2LVQ D; 2JA2 A; 3KXE C; 3PNY A; 3JAM S; 3U5Z B; 1QAM A; 1UFZ A; 2L2D A; 1RU3 A; 2QP9 X; 4I81 A; 4DV0 M; 4BLC A; 2L7I A; 2W82 A; 2UUC M; 1XNQ M; 4NSO B; 3QYB A; 2L09 A; 4UN2 B; 1L1T A; 4QHS A; 4FCV A; 2R65 A; 5KPZ A; 1TDZ A; 1N33 M; 3HU1 A; 4OW0 A; 2EKF A; 3RFW A; 1HNW M; 3SAU A; 4FD2 A; 1ZAE A; 3HJS A; 3WHK A; 1OIZ A; 1TH3 A; 4DUY M; 3LCU A; 2Y0Q A; 3OTO M; 4FWD A; 5EXX A; 3NBX X; 2MRO B; 4WUR A; 5FTM A; 4F1I A; 1AUA A; 2LBC A; 1E9S A; 3AOE A; 3HU3 A; 4LF8 M; 1NJG A; 1Z5C A; 1NVM A; 1WR1 B; 4QOS A; 4RF1 A; 5FTL A; 5KPT A; 3GLI A; 2Z4S A; 4YHH M; 3GPP A; 3GLG A; 5EP1 A; 2UUB M; 2DEN A; 4A3V B; 2BWB A; 3MHV C; 2JNH A; 5ITQ A; 4M9S A; 1VEG A; 4M9X A; 4Y28 F; 4ITQ A; 4NXN M; 2FNA A; 1V33 A; 2DAE A; 4G3O A; 3TWL A; 3LVW A; 3AKZ A; 3B74 A; 2BWE A; 2C98 A; 2ZAM A; 1TF0 B; 3FTC A; 3ZH9 B; 1QAQ A; 2WSE F; 7CAT A; 3UJN A; 2Q2E B; 4Q7J A; 4LJ5 A; 4AKI A; 3FKE A; 4DV4 M; 1MJG M; 4GH9 A; 1IXS B; 2CHV A; 3HU2 A; 4MH0 E; 1IN8 A; 3SAW A; 4LF5 M; 4B3R M; 2EUC A; 4QNM A; 3NWL A; 3KOY E; 1LTM A; 3IEC A; 2RRU A; 3W67 A; 1PJI A; 1IN7 A; 1IM2 A; 2LHG A; 1XMO M; 3L29 A; 1EFU B; 3UK6 A; 2RGO A; 4MM3 B; 3D8L A; 1G3I A; 1IY0 A; 4PCZ A; 4AI6 A; 2CHQ A; 2Z7J A; 3F92 A; 4RF0 A; 5FSW A; 1HT2 E; 1NSF A; 1QUS A; 3J81 S; 3U60 A; 4IJE A; 1QAO A; 2XSZ D; 3GQ5 A; 3IHP A; 1N78 A; 1G8P A; 1KFV A; 2E5L M; 4IBG A; 2Z3X A; 4L15 A; 1WXQ A; 4CJ6 A; 1Z5B A; 1WGL A; 5FTN A; 1IN5 A; 1OJL A; 2VII A; 1IY1 A; 2Z8Y M; 3U6S A; 1NHG C; 2K6B A; 4OVZ B; 3L28 A; 4L4U A; 3UGJ A; 3FRH A; 2QNJ A; 3TWM A; 1OAI A; 2HAK A; 2KHH A; 3T15 A; 3DOA A; 1C7Y A; 2KW0 A; 3FTF A; 3SC3 A; 3A45 A; 3SMS A; 4DR4 M; 1N36 M; 4Z8X A; 5EP4 A; 3CGW A; 2F4V M; 1R7R A; 1TH2 A; 2R4J A; 2RGH A; 2BJW A; 4GEW A; 5ITU A; 1L2D A; 3FUV A; 3SBJ A; 2D7H A; 1ZQ9 A; 3GLH A; 2YR0 A; 3EIE A; 1SXJ E; 2DHR A; 5GKN A; 4M0W A; 4MGY E; 3MK6 A; 1JR3 E; 4PD2 A; 4IBJ A; 5ITX E; 3JR5 A; 2L4E A; 1KSF X; 2K47 A; 2ZAO A; 3U6L A; 2J7N A; 2HWJ A; 2ZTC A; 4PDG A; 3C9P A; 1LV7 A; 4G4R A; 3HHY A; 3HX3 A; 4DR2 M; 1TDH A; 4OX9 M; 1PGY A; 3W0L B; 4IBE A; 4AQY M; 2EO2 A; 4REZ A; 5LMU M; 2DNA A; 2YQZ A; 2R45 A; 2L4F A; 2CUZ A; 2R46 A; 2XFT A; 4JI0 M; 3KP1 E; 1K3W A; 2C99 A; 4EIW A; 3V76 A; 4IBC A; 3A46 A; 1Q3C A; 2WSC F; 3TWK A; 2BNK A; 1N34 M; 2B3T A; 3U6C A; 4P17 A; 3FYC A; 4AG5 A; 4L78 A; 3JR4 A; 4LF4 M; 3W0F A; 2R18 A; 2MH8 A; 1V34 A; 4HEO A; 1IXZ A; 2KA6 B; 4LY6 A; 1SG9 A; 3VK7 A; 4GKK M; 3ZQJ A; 1QQW A; 2EJS A; 4AW4 A; 1IBM M; 3FTD A; 1OTR A; 3DA1 A; 3KOW E; 2Y21 A; 3U6O A; 3BBZ A; 2JZ1 A; 1SXJ C; 4DR7 M; 3KFU G; 2Y20 A; 2QZ4 A; 1PJJ A; 3QYE A; 1NO1 A; 3AL0 C; 2VQF M; 1ZV1 A; 1BVS A; 2JY5 A; 3PVS A; 3E9S A; 2L7H A; 1VDD A; 3K9O A; 3C3D A; 4DR6 M; 1Z59 A; 2ZAN A; 3LW5 F; 4KT0 F; 4LGY A; 2DI0 A; 3GRY A; 1GJS A; 4B7H A; 4DUZ M; 3SAS A; 4KHP M; 1NY6 A; 4WP2 A; 1TH4 A; 1DGB A; 4L8R C; 5EXP A; 1OIP A; 1QAN A; 5DNY A; 3I51 A; 3E21 A; 1DGH A; 3K2L A; 5C18 A; 2LTU A; 1H6U A; 1OFH A; 1OQY A; 2DAG A; 3M6A A; 4HL4 A; 3J7A S; 3RE8 A; 3ZCB B; 4KO8 A; 4JI3 M; 1JB0 F; 5BPV A; 1IBK M; 2JZ0 A; 1GJT A; 4IIW A; 4BB9 A; 1GL6 A; 1Q3B A; 3DFZ A; 2XZF A; 4DBG B; 2GNO A; 3AFH A; 2EKK A; 1F4I A; 1XXH A; 3FTE A; 2CFO A; 3FUX A; 3FD9 A; 2QPA A; 2DZO B; 1QUT A; 2DWL A; 2VF7 A; 4CIS A; 3CF6 E; 5KO3 A; 2F5P A; 3U6E A; 2NQ8 C; 2K9D A; 1IFY A; 3HKP A; 2DAI A; 2R4E A; 2CE7 A; 2DZL A; 3PXG A; 1QYR A; 2KZS A; 1WHC A; 1XHB A; 2AHM A; 3FYD A; 4I8O A; 4RKU F; 1QDR A; 3KW6 A; 3TQS A; 4B08 A; 4B3M M; 3HHX A; 4CHT B; 4LFA M; 2MJ5 B; 2QHO B; 1W5S A; 4F2L A; 1L2C A; 3I04 M; 1R2Y A; 3W68 A; 2LVO C; 2I7N A; 2X8A A; 3KSJ A; 5IZ7 D; 1KYI A; 2C9O A; 2KXE A; 1FJG M; 1N75 A; 3R9X B; 1IXR C; 2JXN A; 2KDL A; 2QCU A; 4FCT A; 1DO2 A; 3LQR A; 1D0M A; 4D82 A; 4MGK E; 1T43 A; 3R8F A; 4II7 A; 3HZJ A; 3KS8 A; 5KQ8 A; 3IG8 A; 3HGI A; 1MU5 A; 1P3Q Q; 3GLI B; 4MB7 A; 1R4G A; 1Y8G A; 3K1J A; 3C58 A; 3UZU A; 1TR8 A; 4X64 M; 1X37 A; 2KNZ A; 4LF9 M; 3AJI B; 2FFJ A; 3QWL A; 3EIH A; 2R6F A; 1E32 A; 2Y0T A; 3CF0 A; 3VK8 A; 2QBY B; 3KP0 E; 3E4R A; 2C9C A; 4R3D A; 2YFQ A; 1NHW C; 4QHT A; 1XB2 B; 2APL A; 1VEK A; 1L8Q A; 2LWX A; 2EA0 A; 3A42 A; 2UUA M; 2Z4R A; 2V1C A; 2ZTD A; 2LVA A; 3CF2 A; 1DO0 A; 2ZBK B; 2F5S A; 2M5Z A; 4JV5 M; 1J7K A; 4R71 A; 3QAU A; 1DGF A; 4XGI A; 1QVR A; 3THG A; 1ZMW A; 2FOI C; 4GIT A; 2X49 A; 4LGM A; 4LJ6 A; 4L16 A; 5DYI A; 3U6P A; 1E94 E; 5EP3 A; 4LFC M; 3L25 A; 2R44 A; 3VKG A; 4KLN A; 1A5T A; 5DFL A; 3RGP A; 2M60 A; 4LF7 M; 4LZJ A; 1PJQ A; 4JI2 M; 3D8B A; 2CWB A; 1JQJ C; 4LJ7 A; 3ZC7 B; 2VDB B; 3J27 B; 8CAT A; 1G59 A; 2CEA A; 4FVM A; 3TPZ A; 4GMQ A; 2J7O A; 2OOA A; 2LNH C; 2X4A A; 4LG2 A; 4M0D A; 4NXM M; 4P16 A; 1L2B A; 1TGU A; 1YE9 A; 1XMQ M; 2V6Z M; 4IBB A; 3GLH E; 2DAK A; 1GL7 A; 3U60 B; 3SAT A; 3MJ5 A; 4GKJ M; 4D81 A; 5IWA M; 5H37 D; 3GPX A; 4JXJ A; 3PFI A; 1W5T A; 2BJV A; 1HNX M; 4K0K M; 4NSR A; 1YUB A; 5EXT A; 5FTK A; 3T6P A; 4JN6 A; 3GRV A; 2JWS A; 4MGI E; 4HLQ A; 1DGG A; 2ZM6 M; 5ITY A; 5BR8 M; 4CIZ A; 2DAM A; 2HL7 A; 3BXW A; 3C3E A; 4NOO B; 3PNV A; 4LJ9 A; 1SXJ A; 1JR3 A; 3H4M A; 1SXJ D; 3HWS A; 5ITX A; 1JR3 D; 3U6M A; 1G71 A; 1YLA A; 1GO5 A; 3B7Q A; 3CTW B; 3VDP A; 3SAR A; 3GLF A; 1ZMU A; 3GRU A; 3KDS E; 4MGZ E; 5EXS A; 1ZMV A; 1IN4 A; 4D80 A; 3GLH B; 3H4J A; 2F5O A; 1QZM A; 4ZPX A; 1NV9 A; 2FH0 A; 3U5Z A; 2LHC A; 5EP2 A; 2UXB M; 2CHG A; 1VDL A; 2CV0 A; 4G6Z A; 2CP8 A; 1UM8 A; 2JP7 A; 3DZD A; 2HCB A; 4GIP A; 4X65 M; 1HNZ M; 4R7G A; 3Q8X A; 1NNJ A; 3L27 A; 5IT9 S; 2LXE A; 1PJT A; 1PJS A; 4LJ4 A; 1DV0 A; 1ORY B; 3UMM A; 2KNA A; 3NBI A; 3SFZ A; 1T6O A; 4DV5 M; 4YY3 M; 5F3W A; 3VDU A; 3K92 A; 2CV1 A; 2XH9 A; 1PM5 A; 4LF6 M; 4IJF A; 4AG6 A; 4JI7 M; 1OKS A; 4LJ8 A; 2DVW B; 4I4L A; 1WJ7 A; 1S3S A; 4LRT A; 1IN6 A; 3IG5 A; 3SHF A; 3VFD A; 2UXD M; 4FWH A; 4GC9 A; 1GLN A; 4CGY B; 1WIV A; 1EIJ A; 5A2Q S; 3FUT A; 1G4A E; 1GVN A; 4IBK A; 1Z6T A; 4GHL A; 4JI6 M; 3GLI E; 3U61 B; 5L8R F; 2WZJ A; 3GLG E; 4MGH A; 1TTE A; 5FTJ A; 4KOD A; 1QZE A; 1HQC A; 1NV8 A; 2G3Q A; 4NRV A; 3KOX E; 2P5T A; 1XWI A; 2FE8 A; 2KNV A; 3LMM A; 1IXS A; 2KZU A; 1HR0 M; 3I4V A; 3WHL A; 2OOB A; 4JI4 M; 1IBL M; 3SMP A; 3KOZ E; 1NJF A; 1EE8 A; 3B7Z A; 5ITR A; 1DGH B; 3J80 S; 1HQY E; 4G4Q A; 4IBI A; 3B9P A; 4X66 M; 4ANR A; 2CV2 A; 3SAV A; 1QDT A; 1K3X A; 3Q8G A; 2XF3 A; 4FWG A; 1T3T A; 5C1B A; 1XXH B; 2DZN B; 3I01 M; 3L26 A; 2F5Q A; 3LCV B; 4Z6Y A; 2QBY A; 2QSF X; 4AKG A; 1MN3 A; 2I7P A; 4DR1 M; 1Z5A A; 3FUW A; 3AOE C; 2XZU A; 3VKH A; 3FUU A; 2DXI A; 3GO8 A; 3GLG B; 4S12 A; 1IQP A; 4PT5 A; 3J7B A; 3MMP A; 4W5W A; 4QOZ C; 3K8Z A; 1N32 M; 3A98 B; 2K0B X; 4OVZ A; 3T38 A; 2C5R A; 1R6B X; 3AV0 A; 2OO9 A; 4LFB M; 3B89 A; 3KSX A; 1N77 A; 4B3S M; 1R5L A; 2A5Y B; 2QEN A; 4L6V 6; 3SHG B; 4TUW A; 2ERC A; 2XEP A; 3LVV A; 3GQ4 A; 3T1H M; 1J5E M; 4JI1 M; 1YSY A; 2HKJ A; 4G4O A; 1OFI A; 1MX0 A; 4LCB A; 3GP1 A; 2OQ4 A; 1I94 M; 2O5R A; 4JYA M; 4FCW A; 3E46 A; 2DWN A; 2MR9 A; 2RKO A; 3U6D A; 2R62 A; 2KRU A; 3B7N A; 3HJ8 A; 4DV2 M; 2H1R A; 1PRB A; 5LMN M; 5ITT A; 4WW0 A; 3SYK A; 5E6J A; 2C96 A; 4IBF A; 2XSZ A; 3GRR A; 2JY7 A; 1L1Z A; 1HJP A; 4PDI A; 1NNU C; 1K82 A; 2G5G X; 4BBA A; 2LVN C; 4LJA A; 3M0E A; 4JI5 M; 2O01 F; 3LQQ A; 2YNM D; #chains in the Genus database with same CATH homology 1EIJ A; 2CRU A; 2K6B A; 2FH0 A; 2JXN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
