The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
45
|
sequence length |
122
|
structure length |
122
|
Chain Sequence |
NAMSQKLYNMKFAAVYLALIAKVERKGGKAESVHQVTSWLTGYEVSDVLACLDRDVTYGDFFRQAPYYVPERIAITGKICGVRIEEIDDPLMQEIRRLDKLVDWLAKGKTSQQVLEKYEKHK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of uncharacterized protein SP1917.
rcsb |
| molecule keywords |
Uncharacterized protein SP1917
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Streptococcus pneumoniae
|
| total genus |
45
|
| structure length |
122
|
| sequence length |
122
|
| ec nomenclature | |
| pdb deposition date | 2008-02-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09966 | DUF2200 | Uncharacterized protein conserved in bacteria (DUF2200) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | uncharacterized protein sp1917 domain |
#chains in the Genus database with same CATH superfamily 3C9P A; #chains in the Genus database with same CATH topology 2BJV A; 3GPX A; 2CV2 A; 1L1T A; 2QBY A; 4IBK A; 1G8P A; 3F92 A; 3MHV C; 4QHS A; 5ITU A; 1Z5C A; 4FCT A; 1SXJ A; 3NWL A; 4KO8 A; 2OPF A; 1C1K A; 1R4G A; 1Q39 A; 4HEO A; 1H6U A; 4QNR A; 4G4R A; 4AI6 A; 4JI1 M; 3QYE A; 1A5T A; 1MJG M; 4Q7J A; 3AJI B; 1V34 A; 1GJS A; 2E5L M; 2ZTC A; 3J2P B; 4OVZ B; 4LCB A; 2QCU A; 3ZQJ A; 3T38 A; 5KPT A; 3GO8 A; 2LVA A; 3GPP A; 4ANR A; 2MRO B; 4DV3 M; 2QHO B; 4IJF A; 1SXJ D; 2JA2 A; 2V1C A; 2VF8 A; 3SMS A; 3HHX A; 4G4O A; 1HJP A; 2LVN C; 2DAE A; 4DV0 M; 3AKZ A; 2HHH M; 4FCW A; 1ZMU A; 1SXJ E; 3U6O A; 3I01 M; 2UXD M; 2DI0 A; 1V33 A; 5IWA M; 1IXR C; 2O25 A; 2WSE F; 3B7Z A; 3B9P A; 5E6J A; 1QUS A; 3VLF B; 4REZ A; 3U61 A; 4LFC M; 3Q8G A; 2ZBK B; 3LW5 F; 4WUR A; 1OIP A; 3FTF A; 4OW0 A; 4K0K M; 4MB7 A; 4IJE A; 3L2A A; 4DR4 M; 2ZM6 M; 2R46 A; 3PNY A; 3UGJ A; 2Z4S A; 1IBL M; 2R6F A; 3PVS A; 3H4J A; 3R9X B; 3AL0 C; 4NOO B; 5DYG A; 1AUA A; 1UM8 A; 1ZMV A; 2WZJ A; 2CEA A; 2Z8Y M; 2CHG A; 3QWL A; 1DGH A; 4FCV A; 5EXX A; 3K1J A; 3DFZ A; 5BPV A; 3VK8 A; 1NNJ A; 1TF0 B; 2BWB A; 2VDB B; 3DZD A; 1DO2 A; 3LQR A; 4WW0 A; 1NO1 A; 2UUB M; 4X64 M; 2FS1 A; 3CGW A; 2CUZ A; 2A5Y B; 2OO9 A; 1K3W A; 1PJT A; 1IY0 A; 2ERC A; 1NHW C; 1QUT A; 2KRU A; 4M0W A; 4QNM A; 4EIW A; 1PM5 A; 4CIS A; 4KT0 F; 1DGG A; 3L28 A; 4IBB A; 3TE6 A; 3B89 A; 1OAO C; 1NHG C; 1XNR M; 3GLH A; 1S3S A; 4YY3 M; 4GHA A; 2KDL A; 1Q3B A; 1TH3 A; 3VKH A; 2MR9 A; 2XZF A; 1LV7 A; 2ZAO A; 2XZU A; 1I94 M; 4G3O A; 2P5T A; 3T1H M; 3C9P A; 1GL6 A; 1XXH E; 2L7H A; 4PD2 A; 1ORY B; 3SAW A; 1L8Q A; 2ZTD A; 3RFW A; 3SAS A; 2KNV A; 3U6C A; 4DR3 M; 2EKK A; 1GJT A; 3U6D A; 2R4J A; 1YE9 A; 2I7P A; 4MGY E; 4MH0 E; 1KYI A; 1G4A E; 3C3D A; 3HJ8 A; 3SAR A; 4AKH A; 3T15 A; 4HLQ A; 1HT1 E; 3J81 S; 2VQE M; 2MJ5 B; 1JR3 A; 5FTJ A; 4R3D A; 1G41 A; 4LF4 M; 1QDR A; 1TDH A; 3BXW A; 3KXE C; 1IBK M; 4XBO A; 3LCU A; 2LWX A; 4NC6 A; 2LVQ D; 3H4M A; 1WIV A; 4GH9 A; 2KW0 A; 3WHL A; 3LMM A; 4RNA A; 3GLF B; 2R18 A; 2JXN A; 1WHC A; 5FTK A; 2QEN A; 1AIP C; 3TWL A; 3GLI E; 2N35 A; 1PJJ A; 3U6L A; 4LF9 M; 3GLG E; 1JR3 D; 1IY2 A; 4B7G A; 3U6Q A; 3U5Z A; 1IN6 A; 4II7 A; 1QAO A; 4MGK E; 3FTE A; 4NSO B; 1K3X A; 3M6A A; 2DAK A; 1NJG A; 1GAB A; 3GRU A; 2LVO C; 5L8R F; 3VK7 A; 3KSX A; 4I8O A; 1ZQ9 A; 4GIP A; 4JXJ A; 3D8L A; 3MJ5 A; 1QZM A; 2EO2 A; 3EIH A; 4CJ6 A; 2FFJ A; 4AG6 A; 2L7I A; 4LJ5 A; 1E32 A; 4G6Z A; 1SG9 A; 3FE3 A; 4D82 A; 5JI2 E; 2RRU A; 1PRB A; 2BWE A; 4G4Q A; 1TGU A; 1ZV1 A; 2CFO A; 3B7Q A; 3FTC A; 5ITR A; 1PJQ A; 3A42 A; 3VFD A; 3IHP A; 3U60 B; 2R4E A; 4IBG A; 3TPZ A; 1DO0 A; 1IXS B; 4LFB M; 3HGI A; 4B3M M; 1YUB A; 2FNA A; 4GKK M; 4JI4 M; 2DZL A; 4IBF A; 2LXE A; 3FTD A; 3AV0 A; 3RE8 A; 3TL4 X; 2L4F A; 4AW4 A; 5KQD A; 5DNY A; 3UJN A; 3SAV A; 1YLA A; 3BOS A; 2OOA A; 4M9Z A; 3GRV A; 4FVM A; 1R2Z A; 2NQ8 C; 4ZPX A; 3T1Y M; 4S12 A; 2H1R A; 2XF3 A; 2KXE A; 3AOE A; 3MK6 A; 4DR1 M; 1OIZ A; 2JUJ A; 2XSZ D; 2DVW B; 4MGZ E; 5FLX S; 2ZAM A; 1VDL A; 4LZZ A; 1TH4 A; 3K9O A; 2KZU A; 4AQY M; 1ZMW A; 3FUV A; 2DAI A; 1N77 A; 4TUW A; 4IBD A; 4LFA M; 1IM2 A; 3Q8X A; 4DV4 M; 2JWS A; 4GC9 A; 1L1Z A; 3VDU A; 3KS4 A; 2OQ4 A; 1Q02 A; 5ITQ A; 2DWZ B; 2JY7 A; 2DWN A; 3C3E A; 1Z5B A; 3A46 A; 3GP1 A; 1DV0 A; 2X8A A; 4W5W A; 3C58 A; 2C98 A; 4B7F A; 2D7E A; 4I81 A; 2L09 A; 3VKG A; 2QNJ A; 2X4A A; 4JN6 A; 2M5Z A; 2MGW A; 4AG5 A; 7CAT A; 3HU2 A; 5KPZ A; 2VF7 A; 2JY6 B; 1OFH A; 2DHY A; 2CP8 A; 2LHG A; 2XFS A; 4Z8X A; 2UXB M; 3SHF A; 1GO5 A; 5FTL A; 4NXM M; 2WSC F; 1Y8G A; 4F2L A; 1XNQ M; 2DAM A; 1TH2 A; 1HQC A; 1QAM A; 3U6E A; 2V1U A; 4LF7 M; 1XXH A; 1IN7 A; 1MU5 A; 3FRH A; 4IBI A; 2DHR A; 4MGI E; 4Y28 F; 4LRS A; 3K2L A; 3JAM S; 1N32 M; 5F3W A; 2DNA A; 5C18 A; 1XHB A; 3ZH9 B; 2HCB A; 4G4N A; 3PFI A; 1K82 A; 3SFZ A; 5BR8 M; 4AKI A; 2DEN A; 3HX3 A; 4JI5 M; 2R62 A; 1QQW A; 3CF0 A; 5FTN A; 1PJI A; 2EJS A; 1NV9 A; 1NY6 A; 3D8B A; 3E21 A; 1XMQ M; 1J5E M; 3CF2 A; 3J80 S; 1DGF A; 3GQ4 A; 3ZCB B; 2DKL A; 4LF5 M; 4A3V B; 4DBG B; 3KP1 E; 2QBY B; 3IG8 A; 4QOZ C; 1IN8 A; 1Z59 A; 1TTE A; 2C99 A; 2FOI C; 3GPY A; 4DR7 M; 3GLF E; 3GLI A; 3SHG B; 2K9D A; 3U60 A; 4FWH A; 3HU1 A; 4UN2 B; 4B3S M; 1WGL A; 4KHP M; 3W68 A; 3GLG A; 1FJG M; 3J7B A; 4GRI A; 2VQF M; 4NXN M; 4DR5 M; 3SYL A; 1VQ1 A; 2LVP C; 3HHY A; 4QOS A; 3HJQ A; 3UMM A; 4KOD A; 4XGI A; 1T43 A; 1MX0 A; 2LNH C; 1WJ7 A; 2R65 A; 4LY6 A; 1L2B A; 4JI0 M; 1VEK A; 3QAU A; 4LF6 M; 4DV6 M; 2Q2E B; 4JI2 M; 5IZ7 D; 1W5S A; 5ITX E; 2FE8 A; 2H5X A; 3HU3 A; 3B7N A; 1R5L A; 3JR5 A; 2L2D A; 3L27 A; 4OVZ A; 2LHC A; 1NSF A; 2JZ0 A; 4BLC A; 4GIT A; 2RKO A; 4LF8 M; 1N75 A; 1Z6T A; 5EJC A; 4HL4 A; 1V92 A; 4OU7 A; 2L4E A; 1VG5 A; 2J7O A; 4FD2 A; 2DWL A; 1YSY A; 2DZN B; 3E46 A; 2JY5 A; 3FYC A; 2RGH A; 3NBI A; 1HT2 E; 3DA1 A; 4FW9 A; 5EXT A; 1IFY A; 4GMQ A; 4JI3 M; 3R8F A; 1IBM M; 3KSJ A; 3CTW B; 5ITY A; 1QYR A; 2Y21 A; 4JYA M; 3TWK A; 3A45 A; 1XMO M; 2C5R A; 3J27 B; 2EA0 A; 4LJ7 A; 1QVR A; 4DUY M; 2JNH A; 2F5Q A; 3A98 B; 2HL7 A; 1L2C A; 2CV1 A; 1OQY A; 2OOB A; 4I4L A; 4X66 M; 4GEW A; 1G71 A; 2XSZ A; 4GC5 A; 2B3T A; 2Z7J A; 2F5P A; 4B3T M; 2MH8 A; 2XH9 A; 3KOZ E; 1SXJ C; 3HWS A; 3W67 A; 5LMU M; 1PGY A; 2XEP A; 3K8Z A; 3GLH B; 4LJ6 A; 1DGB A; 4GKJ M; 2RGO A; 3ILK A; 2DAG A; 1N33 M; 2DXI A; 1T6O A; 4BBA A; 4PDG A; 4DR6 M; 2LBC A; 3LVV A; 2F5S A; 3AOE C; 2Y0Q A; 1GLN A; 1G59 A; 1NY5 A; 4L8R C; 1HQY E; 3FKE A; 2XFT A; 2CE7 A; 4R7G A; 3MMP A; 4DV2 M; 3VDP A; 1NV8 A; 1IN5 A; 2K47 A; 2AHM A; 2QQ8 A; 3KVW A; 4L16 A; 2GQF A; 2V6Z M; 4PDI A; 1LTM A; 2QSF X; 5JI3 E; 1HNX M; 4AZF A; 4IIW A; 1RU3 A; 4NRW A; 3KP0 E; 3I4V A; 4RF1 A; 1IN4 A; 3E4R A; 2DWM A; 3DOA A; 4PT5 A; 3E9S A; 1CUK A; 1OTR A; 4B08 A; 4R71 A; 5ITT A; 3GRY A; 4DV1 M; 4CHT B; 1PJS A; 1IXZ A; 4ITQ A; 2Z3X A; 1GL7 A; 1NJF A; 2KNZ A; 3TWM A; 1WXQ A; 2Z4R A; 2JZ1 A; 3FUU A; 5KO3 A; 1IY1 A; 3M7G A; 2J5Y A; 2LH0 A; 2R0I A; 5E26 A; 2UXC M; 4RKU F; 1XB2 B; 3JR4 A; 1KSF X; 5KPR A; 5IRE B; 3THG A; 3U5Z B; 3FUW A; 5EP4 A; 5EP2 A; 3WHK A; 1QDT A; 1VEG A; 3LCV B; 1EIJ A; 3PNV A; 4LZJ A; 3GLF A; 3KS8 A; 2APL A; 4CGY B; 2KNA A; 2CHQ A; 3I4Y A; 4FWD A; 5EP1 A; 3HY5 A; 4AKG A; 3AFH A; 4F1I A; 3HKP A; 3I04 M; 4X65 M; 3KFU G; 2VII A; 3L25 A; 1HNZ M; 4KLN A; 1OJL A; 2JY8 A; 4L6V 6; 5DYI A; 4M0D A; 3KOX E; 1QAQ A; 2KZS A; 3EIE A; 1E9S A; 4NSR A; 3GQ5 A; 1VDD A; 2UUC M; 4JI8 M; 4MM3 B; 5A2Q S; 1XC8 A; 5FSW A; 2F4V M; 3V76 A; 1EE8 A; 4LGY A; 4L15 A; 3L26 A; 1D0K A; 2LTU A; 2O01 F; 4B7H A; 5ITX A; 1EFU B; 1R6B X; 2KHH A; 4GHL A; 2QPA A; 1SXJ B; 1JQJ C; 1ZAE A; 2HAK A; 2W82 A; 3J7A S; 5KQ8 A; 2Y0T A; 4Z6Y A; 4DUZ M; 2L6O A; 3TQS A; 1D2N A; 1R7R A; 2GNO A; 3RGP A; 4P17 A; 1G3I A; 3KOW E; 5GKN A; 3FRI A; 8CAT A; 1WR1 B; 2I7N A; 4JI7 M; 1IXS A; 2HWJ A; 2QZ4 A; 3UK6 A; 1OKS A; 3U6S A; 3AOG A; 2EKF A; 4B3R M; 2DZO B; 4YHH M; 4QHT A; 4JI6 M; 4LJ9 A; 4LJ4 A; 1HR0 M; 4IBE A; 1NVM A; 1OAI A; 2UU9 M; 4LG2 A; 1F4I A; 1R2Y A; 2KEB A; 2CHV A; 3BBZ A; 3L29 A; 2D7H A; 4MGH A; 2ZAN A; 2YFQ A; 2F5N A; 2G3Q A; 2K6B A; 2BNK A; 1D0M A; 1TR8 A; 2YQZ A; 1X37 A; 2EUC A; 3LVW A; 3FUT A; 2FH0 A; 4IBJ A; 1Q3C A; 3IG5 A; 4NRV A; 3ZC7 B; 2XGN A; 3SBJ A; 2D7G A; 2Y20 A; 5IT9 S; 1I4W A; 4M9S A; 4OX9 M; 4LJ8 A; 5EP3 A; 3GPU A; 2X49 A; 4I5S A; 3U61 B; 1N34 M; 1D0L A; 2F5O A; 2YR0 A; 4L78 A; 3NBX X; 1E9R A; 3FD9 A; 3U6M A; 3W0L B; 4RF0 A; 1KFV A; 2JP7 A; 3FUX A; 3PXG A; 1WGN A; 3KOY E; 1W5T A; 3GLH E; 1BVS A; 3I51 A; 4DV5 M; 3QYB A; 4FWG A; 4D81 A; 3LQQ A; 3KW6 A; 3SC3 A; 2CV0 A; 2R44 A; 1XWI A; 1L2D A; 1GKI A; 3HHW A; 1IQP A; 2G8L A; 1XXH B; 3T6P A; 3FYD A; 2K0B X; 1DGH B; 2C9C A; 4PCZ A; 3K9P A; 4LJA A; 5H37 D; 4LRT A; 5LMN M; 2UUA M; 3KDS E; 4DV7 M; 5EXS A; 1FNN A; 2C9O A; 3UZU A; 2J7N A; 1GVN A; 3HHZ A; 1QAN A; 2CWB A; 2YNM D; 4XK8 F; 1OFI A; 1MN3 A; 1TDZ A; 2C96 A; 4IBC A; 4JV5 M; 3CF6 E; 1N78 A; 5C1B A; 3SAT A; 4M9X A; 1VEJ A; 4X62 M; 2XLJ A; 1JR3 E; 2O5R A; 1QZE A; 3IEC A; 5DFL A; 3B74 A; 2QP9 X; 2KRK A; 3K92 A; 3M0E A; 3U6P A; 4WP2 A; 1Z5A A; 3RGS A; 1HNW M; 1N36 M; 2BJW A; 2R45 A; 1JB0 F; 3W0F A; 3OTO M; 1T3T A; 2G5G X; 4CIZ A; 1NNU C; 1P3Q Q; 3HZJ A; 3GLI B; 3SAU A; 4P16 A; 3SMP A; 1J09 A; 4D80 A; 1UFZ A; 4LGM A; 1E94 E; 1C7Y A; 5FTM A; 2CRU A; 3SYK A; 2HKJ A; 2KA6 B; 3GLG B; 4DR2 M; 2M60 A; 2WSF F; 4L4U A; 5EXP A; 3HJS A; 5EQT A; 3GQ3 A; 4BB9 A; 1J7K A; 3GRR A; 4NL4 H; #chains in the Genus database with same CATH homology 3C9P A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
