1BBGA

Ragweed pollen allergen from ambrosia trifida v, nmr, minimized average structure
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
40
structure length
40
Chain Sequence
b'DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
total genus 8
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 1bbgA00
1BBGA 3BBGA 2BBGA
chains in the Genus database with same CATH superfamily
1UN6B 1QU6A 2EMXA 4BCAA 2LTSA 2CPNA 1XMOE 4LF8E 2VRDA 4DR4E 4KHPE 2EMWA 4DV7E 5ADZA 2LJHA 2JY9A 2EOSA 4M30A 4JV5E 4GKKE 4WFTA 5IT9C 2LUQA 3OMLA 2LRSA 2FV4B 4R2SA 3ECRA 2YU5A 2EPZA 1WRJA 2JPAA 1YSAC 4WSPA 2EN7A 2BB8A 2EOOA 1YYKA 1P47A 4JYAE 3ADJA 2EQ1A 4DR1E 4FK5C 1A1IA 1TN9A 4P7DA 4R2EA 2A25A 5AE2A 3J7AG 4DR3E 2GLIA 2EPNA 4JI6E 4MLVA 3KZYA 4N4RB 2EOQA 2M1SA 1SFEA 4ZYHA 1F2IG 5T6JA 2ADRA 1WXRA 1SR9A 3J80C 2UXDE 4DR7E 2LTRA 1A1JA 4LF6E 1J26A 3AUZA 2YZTA 2DGCA 2EZ6A 3C4BA 3F6HA 5KL5A 1ZR9A 1HNXE 2EN8A 2ZM6E 1G2FC 4X66E 4BS9A 3BGHA 4LF4E 2RSMA 4F9CB 2LJUA 1WHQA 2ODRD 1B69A 4NXNE 2DIXA 4ZYDA 1JK2A 1YFHA 1T4LB 1XNRE 2YTFA 1O0WA 1DI2A 1ZBTA 1FJGE 1X47A 2ELZA 4DV2E 4X62E 2LO3A 3MHSC 3JTZA 3C4TA 2MDGA 3THOB 3IWCA 2MKNA 1KYQA 2EM5A 4GZNC 3HTXA 2JVAA 2EOEA 4JI2E 5A6AA 5LMNE 2LV2A 1MEYC 4M9VC 2CT1A 2JP9A 4DV5E 1Z1BA 2YTGA 2E72A 4X8WA 1X3CA 5KL3A 4F9BB 3BBGA 2EPLX 2YTOA 4R2AA 2LT7A 2EPPA 1RMDA 1YZ9A 2YPNA 2EPXA 1NEIA 4GEQB 3T1HE 2K4VA 2ENCA 2B7TA 1UHZA 1PJSA 2YRHA 4I8OA 1X49A 2UXCE 3M99B 2DB2A 2CSHA 2EMLA 4KZSA 1N34E 2WBSA 4J8ZA 3K6QA 3OTOE 4M2ZA 3KZZA 4BMJA 2G7HA 2YTNA 2L3JA 3LMLA 3KWRA 2LUPB 4M0VA 1YPNA 5BR8E 2V87A 2KONA 2LE2A 2RS6A 3ADLA 2DLQA 2KOUA 2EPAA 3L00A 1IBLE 1XMQE 1L4SA 2F4VE 2KHXA 4ZYEA 4R2CA 3HPZA 5A2QC 2EP3A 1IBME 4RH8A 3QG5C 4O5GA 2DSYA 5IV8B 2B7VA 2JR1A 2EQ3A 2EM6A 4K0KE 2YRMA 4B3SE 1YYWA 2HHHE 2YTIA 2YTQA 4IS1C 1N36E 2V85A 4HEIA 2UUBE 1A1GA 2DMIA 2YTDA 1UBDC 2WZOA 4YHHE 2LMZA 1T4OA 2EOZA 1IBKE 1EH8A 3H09A 2EMCA 1AAYA 2EN1A 1BBGA 1GQEA 2J7JA 2NUGA 2EOJA 3C6MA 4LU9A 2EN2A 2ELYA 2L33A 2LBSB 1PDAA 4LFBE 4Q35B 3UK3C 5AC4A 1WHNA 3P1XA 1N3GA 2UU9E 2ENAA 4KWYA 2EOFA 4B3ME 2EM4A 1IMUA 2YRKA 4WYQB 4NXME 2L2NA 1HNZE 1IQSA 2WBTA 2UUCE 2MC5A 4O4KA 1G2DC 4BBYA 4DV3E 2ODRC 4DUZE 1GZ6A 3EPJA 5AE1A 2D9HA 5F3WA 3BF2A 4DR5E 2RSIA 4TUIA 2MKDA 2YSOA 4WXDA 4LTYA 2VQEE 2EPUA 2JYAA 3F6GA 1RQ0A 1T38A 2YTJA 2L8TA 2GHFA 2EOYA 5DNYA 2L2MA 3AV0A 3C6KA 2ENHA 2HJJA 1HR0E 1IQOA 4X65E 1YYOA 2DLKA 3HQ1A 2RQLA 4B3TE 2EMFA 1DQ3A 2L2KB 2EM2A 4ZYGA 2M4IA 2EOXA 3JAMC 2LCEA 1JK1A 5A6JA 2YSPA 4DV1E 4LFCE 3VK6A 4R2RA 1NCSA 2L92A 2B3TB 2UUAE 2N3HA 4LFAE 1PJQA 2NUFA 3EPLA 2RPCA 1N33E 3TQMA 2NABA 3ZOQB 2H36X 2FTXB 2EN4A 2JOXA 3IWDA 2EM0A 2L6MA 4NHRA 2EWLA 3DF6A 2VE7C 4O24A 2EQ0A 4BHBA 4F6MA 4IJDA 2VQFE 1ZAAC 5A6BD 1KJKA 4R03A 1BBOA 2RS7A 2EJ4A 2EL5A 1X6FA 3ADIA 5AC5A 3EQ1A 2EM8A 4JI7E 1YUIA 1BB8A 3BIDA 2L3CA 4AQYE 2EMIA 2GPIA 2EMBA 5TSEA 4F2JC 4DV4E 2EORA 2HC5A 5KL2A 1EH6A 2I13A 2R1FA 2JOBA 4WX9A 4YY3E 2EE8A 4F54A 1FKAE 2EM7A 2V86A 2N3GA 4R8OA 1PKPA 2YU8A 5FLXC 4X9JA 1WJPA 4LF7E 3MSWA 4JI8E 2WCC3 2EN3A 2EPKX 3LLHA 4L8NA 4X64E 2IHR1 2WBUA 2EPOA 2HGHA 1STUA 5KL6A 2YTPA 3JU0A 1PJTA 2M9AA 1X6HA 1A1KA 2EM3A 4R2QA 4R2PA 4LF9E 2VF1A 4JI5E 4OX9E 2EOMA 2NA2A 2UXBE 4DMIA 2EMAA 3MHHC 2BBGA 4F9AB 2E1MA 4BC9A 1X6EA 2EOIA 2MC6A 1ZBQA 2EMGA 3THNA 5KL4A 2EPMX 1LLMC 1TF6A 4DR6E 4NZVA 2Q8UA 3VHTB 1I94E 1T39A 3DJWA 3VYYA 4O43A 3HPSA 2YT4A 1RC7A 1A1FA 1X5WA 4Q28A 4DUYE 2DRPA 5A69A 1MGTA 5CFFE 1UILA 2N8XA 2FGGA 4OOGC 4MLQA 1GTKA 4JI0E 5KL7A 2K7IA 5LL6R 1X48A 2EL6A 2V89A 5IWAE 4WXCA 2DMYA 1XNQE 5LLQA 4DKKA 4L5NC 5AASA 1N32E 3IWBA 2E5LE 2CTDA 2B9DA 2V83A 2EPCA 2PRTA 2EM9A 1YUJA 5IXMB 4WPYA 2EMHA 2R76A 2EN6A 4TUGA 2EMYA 3EPHA 1EKZA 3J81C 5LMUE 2EMKA 2F8BA 4LF5E 4WSGA 2EL4A 3RMPA 4BHCA 4JI4E 2JXPA 2JWOA 4DR2E 2EMZA 3J7Yp 2V8QB 4JI1E 4DV6E 4BC7A 2NUEA 4P78A 2M7QA 3EPKA 2MDRA 1A1HA 3T1YE 1AH5A 4R2DA 4RHBB 2YTEA 5A6BA 1DGCA 3FIGA 4F6NA 3HXLA 1T4NA 2I9IA 1ZU1A 1J5EE 3VYXA 2LVHA 1TF3A 5AE3A 1HNWE 2YWQA 2EOHA 4B3RE 1EH7A 1A1LA 4HTGA 4GKJE 2V88A 5A6KA 3ADGA 4JI3E 2EPRA 2RTXA 4DV0E 1QNTA
chains in the Genus database with same CATH topology
1BBGA 3BBGA 2BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BBG A;  3BBG A;  2BBG A; 
#chains in the Genus database with same CATH topology
 1UN6 B;  1QU6 A;  2EMX A;  4BCA A;  2LTS A;  2CPN A;  1XMO E;  4LF8 E;  2VRD A;  4DR4 E;  4KHP E;  2EMW A;  4DV7 E;  5ADZ A;  2LJH A;  2JY9 A;  2EOS A;  4M30 A;  4JV5 E;  4GKK E;  4WFT A;  5IT9 C;  2LUQ A;  3OML A;  2LRS A;  2FV4 B;  4R2S A;  3ECR A;  2YU5 A;  2EPZ A;  1WRJ A;  2JPA A;  1YSA C;  4WSP A;  2EN7 A;  2BB8 A;  2EOO A;  1YYK A;  1P47 A;  4JYA E;  3ADJ A;  2EQ1 A;  4DR1 E;  4FK5 C;  1A1I A;  1TN9 A;  4P7D A;  4R2E A;  2A25 A;  5AE2 A;  3J7A G;  4DR3 E;  2GLI A;  2EPN A;  4JI6 E;  4MLV A;  3KZY A;  4N4R B;  2EOQ A;  2M1S A;  1SFE A;  4ZYH A;  1F2I G;  5T6J A;  2ADR A;  1WXR A;  1SR9 A;  3J80 C;  2UXD E;  4DR7 E;  2LTR A;  1A1J A;  4LF6 E;  1J26 A;  3AUZ A;  2YZT A;  2DGC A;  2EZ6 A;  3C4B A;  3F6H A;  5KL5 A;  1ZR9 A;  1HNX E;  2EN8 A;  2ZM6 E;  1G2F C;  4X66 E;  4BS9 A;  3BGH A;  4LF4 E;  2RSM A;  4F9C B;  2LJU A;  1WHQ A;  2ODR D;  1B69 A;  4NXN E;  2DIX A;  4ZYD A;  1JK2 A;  1YFH A;  1T4L B;  1XNR E;  2YTF A;  1O0W A;  1DI2 A;  1ZBT A;  1FJG E;  1X47 A;  2ELZ A;  4DV2 E;  4X62 E;  2LO3 A;  3MHS C;  3JTZ A;  3C4T A;  2MDG A;  3THO B;  3IWC A;  2MKN A;  1KYQ A;  2EM5 A;  4GZN C;  3HTX A;  2JVA A;  2EOE A;  4JI2 E;  5A6A A;  5LMN E;  2LV2 A;  1MEY C;  4M9V C;  2CT1 A;  2JP9 A;  4DV5 E;  1Z1B A;  2YTG A;  2E72 A;  4X8W A;  1X3C A;  5KL3 A;  4F9B B;  3BBG A;  2EPL X;  2YTO A;  4R2A A;  2LT7 A;  2EPP A;  1RMD A;  1YZ9 A;  2YPN A;  2EPX A;  1NEI A;  4GEQ B;  3T1H E;  2K4V A;  2ENC A;  2B7T A;  1UHZ A;  1PJS A;  2YRH A;  4I8O A;  1X49 A;  2UXC E;  3M99 B;  2DB2 A;  2CSH A;  2EML A;  4KZS A;  1N34 E;  2WBS A;  4J8Z A;  3K6Q A;  3OTO E;  4M2Z A;  3KZZ A;  4BMJ A;  2G7H A;  2YTN A;  2L3J A;  3LML A;  3KWR A;  2LUP B;  4M0V A;  1YPN A;  5BR8 E;  2V87 A;  2KON A;  2LE2 A;  2RS6 A;  3ADL A;  2DLQ A;  2KOU A;  2EPA A;  3L00 A;  1IBL E;  1XMQ E;  1L4S A;  2F4V E;  2KHX A;  4ZYE A;  4R2C A;  3HPZ A;  5A2Q C;  2EP3 A;  1IBM E;  4RH8 A;  3QG5 C;  4O5G A;  2DSY A;  5IV8 B;  2B7V A;  2JR1 A;  2EQ3 A;  2EM6 A;  4K0K E;  2YRM A;  4B3S E;  1YYW A;  2HHH E;  2YTI A;  2YTQ A;  4IS1 C;  1N36 E;  2V85 A;  4HEI A;  2UUB E;  1A1G A;  2DMI A;  2YTD A;  1UBD C;  2WZO A;  4YHH E;  2LMZ A;  1T4O A;  2EOZ A;  1IBK E;  1EH8 A;  3H09 A;  2EMC A;  1AAY A;  2EN1 A;  1BBG A;  1GQE A;  2J7J A;  2NUG A;  2EOJ A;  3C6M A;  4LU9 A;  2EN2 A;  2ELY A;  2L33 A;  2LBS B;  1PDA A;  4LFB E;  4Q35 B;  3UK3 C;  5AC4 A;  1WHN A;  3P1X A;  1N3G A;  2UU9 E;  2ENA A;  4KWY A;  2EOF A;  4B3M E;  2EM4 A;  1IMU A;  2YRK A;  4WYQ B;  4NXM E;  2L2N A;  1HNZ E;  1IQS A;  2WBT A;  2UUC E;  2MC5 A;  4O4K A;  1G2D C;  4BBY A;  4DV3 E;  2ODR C;  4DUZ E;  1GZ6 A;  3EPJ A;  5AE1 A;  2D9H A;  5F3W A;  3BF2 A;  4DR5 E;  2RSI A;  4TUI A;  2MKD A;  2YSO A;  4WXD A;  4LTY A;  2VQE E;  2EPU A;  2JYA A;  3F6G A;  1RQ0 A;  1T38 A;  2YTJ A;  2L8T A;  2GHF A;  2EOY A;  5DNY A;  2L2M A;  3AV0 A;  3C6K A;  2ENH A;  2HJJ A;  1HR0 E;  1IQO A;  4X65 E;  1YYO A;  2DLK A;  3HQ1 A;  2RQL A;  4B3T E;  2EMF A;  1DQ3 A;  2L2K B;  2EM2 A;  4ZYG A;  2M4I A;  2EOX A;  3JAM C;  2LCE A;  1JK1 A;  5A6J A;  2YSP A;  4DV1 E;  4LFC E;  3VK6 A;  4R2R A;  1NCS A;  2L92 A;  2B3T B;  2UUA E;  2N3H A;  4LFA E;  1PJQ A;  2NUF A;  3EPL A;  2RPC A;  1N33 E;  3TQM A;  2NAB A;  3ZOQ B;  2H36 X;  2FTX B;  2EN4 A;  2JOX A;  3IWD A;  2EM0 A;  2L6M A;  4NHR A;  2EWL A;  3DF6 A;  2VE7 C;  4O24 A;  2EQ0 A;  4BHB A;  4F6M A;  4IJD A;  2VQF E;  1ZAA C;  5A6B D;  1KJK A;  4R03 A;  1BBO A;  2RS7 A;  2EJ4 A;  2EL5 A;  1X6F A;  3ADI A;  5AC5 A;  3EQ1 A;  2EM8 A;  4JI7 E;  1YUI A;  1BB8 A;  3BID A;  2L3C A;  4AQY E;  2EMI A;  2GPI A;  2EMB A;  5TSE A;  4F2J C;  4DV4 E;  2EOR A;  2HC5 A;  5KL2 A;  1EH6 A;  2I13 A;  2R1F A;  2JOB A;  4WX9 A;  4YY3 E;  2EE8 A;  4F54 A;  1FKA E;  2EM7 A;  2V86 A;  2N3G A;  4R8O A;  1PKP A;  2YU8 A;  5FLX C;  4X9J A;  1WJP A;  4LF7 E;  3MSW A;  4JI8 E;  2WCC 3;  2EN3 A;  2EPK X;  3LLH A;  4L8N A;  4X64 E;  2IHR 1;  2WBU A;  2EPO A;  2HGH A;  1STU A;  5KL6 A;  2YTP A;  3JU0 A;  1PJT A;  2M9A A;  1X6H A;  1A1K A;  2EM3 A;  4R2Q A;  4R2P A;  4LF9 E;  2VF1 A;  4JI5 E;  4OX9 E;  2EOM A;  2NA2 A;  2UXB E;  4DMI A;  2EMA A;  3MHH C;  2BBG A;  4F9A B;  2E1M A;  4BC9 A;  1X6E A;  2EOI A;  2MC6 A;  1ZBQ A;  2EMG A;  3THN A;  5KL4 A;  2EPM X;  1LLM C;  1TF6 A;  4DR6 E;  4NZV A;  2Q8U A;  3VHT B;  1I94 E;  1T39 A;  3DJW A;  3VYY A;  4O43 A;  3HPS A;  2YT4 A;  1RC7 A;  1A1F A;  1X5W A;  4Q28 A;  4DUY E;  2DRP A;  5A69 A;  1MGT A;  5CFF E;  1UIL A;  2N8X A;  2FGG A;  4OOG C;  4MLQ A;  1GTK A;  4JI0 E;  5KL7 A;  2K7I A;  5LL6 R;  1X48 A;  2EL6 A;  2V89 A;  5IWA E;  4WXC A;  2DMY A;  1XNQ E;  5LLQ A;  4DKK A;  4L5N C;  5AAS A;  1N32 E;  3IWB A;  2E5L E;  2CTD A;  2B9D A;  2V83 A;  2EPC A;  2PRT A;  2EM9 A;  1YUJ A;  5IXM B;  4WPY A;  2EMH A;  2R76 A;  2EN6 A;  4TUG A;  2EMY A;  3EPH A;  1EKZ A;  3J81 C;  5LMU E;  2EMK A;  2F8B A;  4LF5 E;  4WSG A;  2EL4 A;  3RMP A;  4BHC A;  4JI4 E;  2JXP A;  2JWO A;  4DR2 E;  2EMZ A;  3J7Y p;  2V8Q B;  4JI1 E;  4DV6 E;  4BC7 A;  2NUE A;  4P78 A;  2M7Q A;  3EPK A;  2MDR A;  1A1H A;  3T1Y E;  1AH5 A;  4R2D A;  4RHB B;  2YTE A;  5A6B A;  1DGC A;  3FIG A;  4F6N A;  3HXL A;  1T4N A;  2I9I A;  1ZU1 A;  1J5E E;  3VYX A;  2LVH A;  1TF3 A;  5AE3 A;  1HNW E;  2YWQ A;  2EOH A;  4B3R E;  1EH7 A;  1A1L A;  4HTG A;  4GKJ E;  2V88 A;  5A6K A;  3ADG A;  4JI3 E;  2EPR A;  2RTX A;  4DV0 E;  1QNT A; 
#chains in the Genus database with same CATH homology
 1BBG A;  3BBG A;  2BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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