1BBGA

Ragweed pollen allergen from ambrosia trifida v, nmr, minimized average structure
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
total genus 8
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 1bbgA00
1BBGA 2BBGA 3BBGA
chains in the Genus database with same CATH superfamily
1N3GA 4IJDA 4M2ZA 2FGGA 2L8TA 2V83A 3J80C 2EN7A 1N33E 1JK2A 2EN1A 2YTEA 2DLKA 2HJJA 1Z1BA 2UXBE 3ZOQB 5CFFE 1YZ9A 2EMXA 2B7TA 2R76A 2EOFA 2EMAA 2NUEA 2EM7A 2EMYA 4KWYA 1TF3A 1BB8A 2EPZA 2DLQA 1T38A 1PKPA 5A6BA 4YY3E 2PRTA 2EMBA 2GLIA 3VYXA 5LLQA 1EH6A 3MHHC 2EN8A 1A1LA 1MGTA 4Q28A 1BBGA 5AE2A 4FK5C 2EQ1A 2YRKA 2L3JA 2EOXA 4KZSA 4DR3E 2B7VA 1B69A 2YT4A 4Q35B 5KL3A 2EM6A 1GQEA 2EQ3A 2EQ0A 1IQOA 2LO3A 1YPNA 2V85A 2YTGA 2EOSA 2WBUA 2YPNA 2N3GA 2IHR1 4RHBB 5A6JA 2EMZA 3AUZA 2N8XA 3F6HA 4ZYEA 2UXCE 2EN3A 2L3CA 1X48A 5DNYA 4HEIA 4O5GA 2EM2A 2V89A 1T4LB 1RQ0A 5FLXC 3C6KA 4B3TE 1TF6A 2H36X 3P1XA 2EORA 4JI8E 4R2EA 4NHRA 3HQ1A 4F6MA 2YTNA 1YSAC 2ZM6E 2JXPA 5AE3A 2JOXA 4WX9A 2WBTA 1YUJA 2EPLX 4WFTA 2EM9A 5KL4A 5KL6A 3C6MA 4F54A 4DKKA 2ADRA 3UK3C 1YUIA 1WJPA 4IS1C 2LE2A 2F8BA 4JI4E 2K7IA 4K0KE 3OMLA 1A1FA 4DR6E 2CPNA 4GKJE 3ADIA 5KL5A 2M1SA 1A1IA 5A6KA 2EPOA 2RQLA 1I94E 4R2DA 3ADLA 4DUYE 2YTFA 2EM4A 1X49A 4F6NA 2L6MA 3DF6A 1ZR9A 4B3ME 1XNRE 4R2CA 2YZTA 1PDAA 4GEQB 1PJQA 2EPKX 4BHCA 1RMDA 4OOGC 2EOYA 2L2KB 2EPAA 4NXNE 5T6JA 3HPSA 2EMFA 3C4BA 1UN6B 2LV2A 2HC5A 2RS6A 2VQFE 4LF6E 5AE1A 3L00A 2EOOA 3HXLA 2EM5A 3J7Yp 2EOZA 2ODRC 2EOIA 3TQMA 3OTOE 1X6EA 1IBME 2EN6A 1DQ3A 2J7JA 1A1JA 4LF7E 2UUAE 2YU5A 2YSPA 2YWQA 2DMIA 1GTKA 3QG5C 4RH8A 3RMPA 1ZU1A 3IWBA 5A6BD 1XNQE 4P78A 2MKNA 2UUBE 2KHXA 2EE8A 2EPNA 2NABA 1G2FC 1EH8A 2D9HA 5IT9C 4WXCA 4L5NC 5IV8B 1WHQA 3VK6A 3J81C 4TUIA 5LMNE 2CT1A 2RS7A 2DIXA 4DR7E 2RPCA 4J8ZA 2NUFA 4BBYA 2Q8UA 4M9VC 4X62E 4O4KA 1F2IG 1FKAE 4WXDA 2DRPA 3H09A 2EM8A 1T4NA 1ZAAC 3HPZA 1A1KA 2VRDA 2L2NA 2V88A 4R2QA 1A1HA 4NXME 3IWCA 4LFBE 2WCC3 2YTDA 4LF9E 2EMLA 4ZYDA 1AH5A 4HTGA 4JI2E 1WHNA 4BC7A 3EPKA 2GPIA 2LMZA 2V87A 1FJGE 2LBSB 1NCSA 2M4IA 4ZYHA 1LLMC 1TN9A 3VHTB 2YU8A 4DV6E 2V8QB 4JV5E 3C4TA 4BCAA 4DV0E 3ADGA 5LL6R 1HR0E 2ELYA 2EPPA 2JVAA 2CSHA 1P47A 2NUGA 4WSGA 3T1YE 4LF8E 2YTQA 2E72A 2HHHE 1JK1A 5TSEA 1WXRA 3MHSC 2UUCE 1N36E 4JI7E 4DR1E 2EL5A 4NZVA 4MLVA 2KONA 2EWLA 2EMKA 2EMHA 2WBSA 2G7HA 2ENCA 2EOHA 4R2AA 1YFHA 4YHHE 3FIGA 2BBGA 2LT7A 1O0WA 2GHFA 2JPAA 2JR1A 1EKZA 1ZBTA 2L33A 1T4OA 1DI2A 1J5EE 2EOEA 5AC5A 2DMYA 1HNWE 3IWDA 2RSMA 1ZBQA 2LVHA 4R2PA 2FTXB 4BHBA 2ENHA 4WYQB 4LF5E 5ADZA 1IBKE 1X6HA 2EOMA 2YTOA 1N34E 4F9AB 2EMGA 2EOJA 2DB2A 2E1MA 2RTXA 1HNZE 2EPRA 1YYOA 4BMJA 1YYWA 2EM3A 2JY9A 2JWOA 1PJTA 1PJSA 5AC4A 5BR8E 4DR5E 5F3WA 3M99B 3EPLA 3T1HE 2EPUA 2YTPA 3BF2A 2E5LE 1YYKA 4R03A 3F6GA 2DGCA 2LRSA 4LFAE 3EPJA 1IMUA 2EZ6A 2ODRD 2UU9E 1L4SA 1X47A 2ELZA 2VE7C 4TUGA 1KJKA 4X64E 2ENAA 4JI3E 2MKDA 2EPMX 2KOUA 2B9DA 4JI0E 2N3HA 5IXMB 4DV1E 5LMUE 3J7AG 4X66E 2EN4A 3LLHA 2VF1A 2V86A 3MSWA 5AASA 3EQ1A 1X3CA 4MLQA 1UBDC 4P7DA 2HGHA 4DR4E 2B3TB 4R8OA 1KYQA 2JYAA 1T39A 2LJUA 4L8NA 2YTJA 4DMIA 4X9JA 2I13A 1J26A 4I8OA 4GZNC 1UHZA 2L2MA 1DGCA 3BIDA 5A2QC 4WSPA 2EMWA 2LUQA 4GKKE 2F4VE 2NA2A 4OX9E 1SR9A 2RSIA 2WZOA 3AV0A 1HNXE 4JI1E 3ADJA 2EN2A 3KWRA 2LTSA 4F2JC 2LTRA 4R2SA 1XMQE 3ECRA 1MEYC 4M30A 2L92A 2YRHA 2EM0A 4O43A 2MDGA 4LU9A 4B3SE 4R2RA 4X65E 2BB8A 2YTIA 2K4VA 3JTZA 4KHPE 2M7QA 2VQEE 2LUPB 4LF4E 4X8WA 2JP9A 2LJHA 2CTDA 4BS9A 3VYYA 4DUZE 5KL2A 2YRMA 4ZYGA 1X6FA 2EL4A 4M0VA 3DJWA 1EH7A 4WPYA 2EL6A 4DV7E 4AQYE 1WRJA 2FV4B 4O24A 2EPCA 4JI6E 4N4RB 2EMIA 1NEIA 4DR2E 2MC6A 2UXDE 4F9BB 2EJ4A 1QU6A 2R1FA 2DSYA 4DV5E 4JYAE 4BC9A 4JI5E 2I9IA 1IBLE 2MC5A 1AAYA 3THOB 4B3RE 5IWAE 4DV3E 2EMCA 4DV4E 2LCEA 1RC7A 1UILA 1A1GA 1SFEA 3KZZA 3BGHA 3BBGA 4LFCE 2A25A 2M9AA 3LMLA 2EOQA 4LTYA 1BBOA 2YSOA 3K6QA 4DV2E 3EPHA 1N32E 3JAMC 1QNTA 4F9CB 1STUA 3KZYA 2MDRA 5A6AA 1G2DC 2EPXA 3JU0A 5KL7A 1X5WA 1GZ6A 1XMOE 3HTXA 5A69A 1IQSA 2EP3A 2JOBA 3THNA
chains in the Genus database with same CATH topology
1BBGA 2BBGA 3BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BBG A;  2BBG A;  3BBG A; 
#chains in the Genus database with same CATH topology
 1N3G A;  4IJD A;  4M2Z A;  2FGG A;  2L8T A;  2V83 A;  3J80 C;  2EN7 A;  1N33 E;  1JK2 A;  2EN1 A;  2YTE A;  2DLK A;  2HJJ A;  1Z1B A;  2UXB E;  3ZOQ B;  5CFF E;  1YZ9 A;  2EMX A;  2B7T A;  2R76 A;  2EOF A;  2EMA A;  2NUE A;  2EM7 A;  2EMY A;  4KWY A;  1TF3 A;  1BB8 A;  2EPZ A;  2DLQ A;  1T38 A;  1PKP A;  5A6B A;  4YY3 E;  2PRT A;  2EMB A;  2GLI A;  3VYX A;  5LLQ A;  1EH6 A;  3MHH C;  2EN8 A;  1A1L A;  1MGT A;  4Q28 A;  1BBG A;  5AE2 A;  4FK5 C;  2EQ1 A;  2YRK A;  2L3J A;  2EOX A;  4KZS A;  4DR3 E;  2B7V A;  1B69 A;  2YT4 A;  4Q35 B;  5KL3 A;  2EM6 A;  1GQE A;  2EQ3 A;  2EQ0 A;  1IQO A;  2LO3 A;  1YPN A;  2V85 A;  2YTG A;  2EOS A;  2WBU A;  2YPN A;  2N3G A;  2IHR 1;  4RHB B;  5A6J A;  2EMZ A;  3AUZ A;  2N8X A;  3F6H A;  4ZYE A;  2UXC E;  2EN3 A;  2L3C A;  1X48 A;  5DNY A;  4HEI A;  4O5G A;  2EM2 A;  2V89 A;  1T4L B;  1RQ0 A;  5FLX C;  3C6K A;  4B3T E;  1TF6 A;  2H36 X;  3P1X A;  2EOR A;  4JI8 E;  4R2E A;  4NHR A;  3HQ1 A;  4F6M A;  2YTN A;  1YSA C;  2ZM6 E;  2JXP A;  5AE3 A;  2JOX A;  4WX9 A;  2WBT A;  1YUJ A;  2EPL X;  4WFT A;  2EM9 A;  5KL4 A;  5KL6 A;  3C6M A;  4F54 A;  4DKK A;  2ADR A;  3UK3 C;  1YUI A;  1WJP A;  4IS1 C;  2LE2 A;  2F8B A;  4JI4 E;  2K7I A;  4K0K E;  3OML A;  1A1F A;  4DR6 E;  2CPN A;  4GKJ E;  3ADI A;  5KL5 A;  2M1S A;  1A1I A;  5A6K A;  2EPO A;  2RQL A;  1I94 E;  4R2D A;  3ADL A;  4DUY E;  2YTF A;  2EM4 A;  1X49 A;  4F6N A;  2L6M A;  3DF6 A;  1ZR9 A;  4B3M E;  1XNR E;  4R2C A;  2YZT A;  1PDA A;  4GEQ B;  1PJQ A;  2EPK X;  4BHC A;  1RMD A;  4OOG C;  2EOY A;  2L2K B;  2EPA A;  4NXN E;  5T6J A;  3HPS A;  2EMF A;  3C4B A;  1UN6 B;  2LV2 A;  2HC5 A;  2RS6 A;  2VQF E;  4LF6 E;  5AE1 A;  3L00 A;  2EOO A;  3HXL A;  2EM5 A;  3J7Y p;  2EOZ A;  2ODR C;  2EOI A;  3TQM A;  3OTO E;  1X6E A;  1IBM E;  2EN6 A;  1DQ3 A;  2J7J A;  1A1J A;  4LF7 E;  2UUA E;  2YU5 A;  2YSP A;  2YWQ A;  2DMI A;  1GTK A;  3QG5 C;  4RH8 A;  3RMP A;  1ZU1 A;  3IWB A;  5A6B D;  1XNQ E;  4P78 A;  2MKN A;  2UUB E;  2KHX A;  2EE8 A;  2EPN A;  2NAB A;  1G2F C;  1EH8 A;  2D9H A;  5IT9 C;  4WXC A;  4L5N C;  5IV8 B;  1WHQ A;  3VK6 A;  3J81 C;  4TUI A;  5LMN E;  2CT1 A;  2RS7 A;  2DIX A;  4DR7 E;  2RPC A;  4J8Z A;  2NUF A;  4BBY A;  2Q8U A;  4M9V C;  4X62 E;  4O4K A;  1F2I G;  1FKA E;  4WXD A;  2DRP A;  3H09 A;  2EM8 A;  1T4N A;  1ZAA C;  3HPZ A;  1A1K A;  2VRD A;  2L2N A;  2V88 A;  4R2Q A;  1A1H A;  4NXM E;  3IWC A;  4LFB E;  2WCC 3;  2YTD A;  4LF9 E;  2EML A;  4ZYD A;  1AH5 A;  4HTG A;  4JI2 E;  1WHN A;  4BC7 A;  3EPK A;  2GPI A;  2LMZ A;  2V87 A;  1FJG E;  2LBS B;  1NCS A;  2M4I A;  4ZYH A;  1LLM C;  1TN9 A;  3VHT B;  2YU8 A;  4DV6 E;  2V8Q B;  4JV5 E;  3C4T A;  4BCA A;  4DV0 E;  3ADG A;  5LL6 R;  1HR0 E;  2ELY A;  2EPP A;  2JVA A;  2CSH A;  1P47 A;  2NUG A;  4WSG A;  3T1Y E;  4LF8 E;  2YTQ A;  2E72 A;  2HHH E;  1JK1 A;  5TSE A;  1WXR A;  3MHS C;  2UUC E;  1N36 E;  4JI7 E;  4DR1 E;  2EL5 A;  4NZV A;  4MLV A;  2KON A;  2EWL A;  2EMK A;  2EMH A;  2WBS A;  2G7H A;  2ENC A;  2EOH A;  4R2A A;  1YFH A;  4YHH E;  3FIG A;  2BBG A;  2LT7 A;  1O0W A;  2GHF A;  2JPA A;  2JR1 A;  1EKZ A;  1ZBT A;  2L33 A;  1T4O A;  1DI2 A;  1J5E E;  2EOE A;  5AC5 A;  2DMY A;  1HNW E;  3IWD A;  2RSM A;  1ZBQ A;  2LVH A;  4R2P A;  2FTX B;  4BHB A;  2ENH A;  4WYQ B;  4LF5 E;  5ADZ A;  1IBK E;  1X6H A;  2EOM A;  2YTO A;  1N34 E;  4F9A B;  2EMG A;  2EOJ A;  2DB2 A;  2E1M A;  2RTX A;  1HNZ E;  2EPR A;  1YYO A;  4BMJ A;  1YYW A;  2EM3 A;  2JY9 A;  2JWO A;  1PJT A;  1PJS A;  5AC4 A;  5BR8 E;  4DR5 E;  5F3W A;  3M99 B;  3EPL A;  3T1H E;  2EPU A;  2YTP A;  3BF2 A;  2E5L E;  1YYK A;  4R03 A;  3F6G A;  2DGC A;  2LRS A;  4LFA E;  3EPJ A;  1IMU A;  2EZ6 A;  2ODR D;  2UU9 E;  1L4S A;  1X47 A;  2ELZ A;  2VE7 C;  4TUG A;  1KJK A;  4X64 E;  2ENA A;  4JI3 E;  2MKD A;  2EPM X;  2KOU A;  2B9D A;  4JI0 E;  2N3H A;  5IXM B;  4DV1 E;  5LMU E;  3J7A G;  4X66 E;  2EN4 A;  3LLH A;  2VF1 A;  2V86 A;  3MSW A;  5AAS A;  3EQ1 A;  1X3C A;  4MLQ A;  1UBD C;  4P7D A;  2HGH A;  4DR4 E;  2B3T B;  4R8O A;  1KYQ A;  2JYA A;  1T39 A;  2LJU A;  4L8N A;  2YTJ A;  4DMI A;  4X9J A;  2I13 A;  1J26 A;  4I8O A;  4GZN C;  1UHZ A;  2L2M A;  1DGC A;  3BID A;  5A2Q C;  4WSP A;  2EMW A;  2LUQ A;  4GKK E;  2F4V E;  2NA2 A;  4OX9 E;  1SR9 A;  2RSI A;  2WZO A;  3AV0 A;  1HNX E;  4JI1 E;  3ADJ A;  2EN2 A;  3KWR A;  2LTS A;  4F2J C;  2LTR A;  4R2S A;  1XMQ E;  3ECR A;  1MEY C;  4M30 A;  2L92 A;  2YRH A;  2EM0 A;  4O43 A;  2MDG A;  4LU9 A;  4B3S E;  4R2R A;  4X65 E;  2BB8 A;  2YTI A;  2K4V A;  3JTZ A;  4KHP E;  2M7Q A;  2VQE E;  2LUP B;  4LF4 E;  4X8W A;  2JP9 A;  2LJH A;  2CTD A;  4BS9 A;  3VYY A;  4DUZ E;  5KL2 A;  2YRM A;  4ZYG A;  1X6F A;  2EL4 A;  4M0V A;  3DJW A;  1EH7 A;  4WPY A;  2EL6 A;  4DV7 E;  4AQY E;  1WRJ A;  2FV4 B;  4O24 A;  2EPC A;  4JI6 E;  4N4R B;  2EMI A;  1NEI A;  4DR2 E;  2MC6 A;  2UXD E;  4F9B B;  2EJ4 A;  1QU6 A;  2R1F A;  2DSY A;  4DV5 E;  4JYA E;  4BC9 A;  4JI5 E;  2I9I A;  1IBL E;  2MC5 A;  1AAY A;  3THO B;  4B3R E;  5IWA E;  4DV3 E;  2EMC A;  4DV4 E;  2LCE A;  1RC7 A;  1UIL A;  1A1G A;  1SFE A;  3KZZ A;  3BGH A;  3BBG A;  4LFC E;  2A25 A;  2M9A A;  3LML A;  2EOQ A;  4LTY A;  1BBO A;  2YSO A;  3K6Q A;  4DV2 E;  3EPH A;  1N32 E;  3JAM C;  1QNT A;  4F9C B;  1STU A;  3KZY A;  2MDR A;  5A6A A;  1G2D C;  2EPX A;  3JU0 A;  5KL7 A;  1X5W A;  1GZ6 A;  1XMO E;  3HTX A;  5A69 A;  1IQS A;  2EP3 A;  2JOB A;  3THN A; 
#chains in the Genus database with same CATH homology
 1BBG A;  2BBG A;  3BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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