2LJUA

Solution structure of putative oxidoreductase from ehrlichia chaffeensis, seattle structural genomics center for infectious disease (ssgcid)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
104
structure length
104
Chain Sequence
MQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVCLSFTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNFTKPRDM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of putative oxidoreductase from Ehrlichia chaffeensis
rcsb
molecule tags Oxidoreductase
source organism Ehrlichia chaffeensis
molecule keywords Putative oxidoreductase
total genus 9
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2011-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04800 ETC_C1_NDUFA4 ETC complex I subunit conserved region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.190 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain atu1810 like domain 2ljuA01
2LJUA 2JYAA
chains in the Genus database with same CATH superfamily
2EOXA 4X9JA 1L4SA 2YZTA 4BBYA 4OX9E 2L3JA 2EOIA 1KYQA 4LF5E 2LV2A 1PKPA 4R2PA 1A1FA 3KZZA 2EM7A 2MDGA 2NUGA 2N3HA 1F2IG 3ADGA 4BHBA 1X47A 3ADLA 2VQFE 2LBSB 1YUIA 2GPIA 3MSWA 1XNRE 5TSEA 1TN9A 4LF6E 4O5GA 2EOSA 4JI7E 4BC9A 2JVAA 2LTRA 4GKJE 2EZ6A 1A1HA 4WSPA 3K6QA 3T1YE 5IXMB 3P1XA 4JI3E 1AH5A 2GHFA 2L8TA 4DKKA 2JR1A 2JP9A 3OTOE 2L6MA 2EPRA 4M0VA 2CPNA 3THOB 4JYAE 4IJDA 1HNWE 2F4VE 2MDRA 1BBOA 2N8XA 3QG5C 2JOBA 2EM3A 2YPNA 1IBLE 2EQ3A 2V85A 5FLXC 3DF6A 4GKKE 3IWCA 4BC7A 3J7AG 1RQ0A 1X49A 4R2RA 2LE2A 3BF2A 2NUEA 3C6KA 2YU8A 2ELZA 3J7Yp 2EL5A 4BHCA 2F8BA 2E72A 4O43A 2V8QB 1X48A 4R8OA 5A6KA 1IBKE 5A69A 2B7VA 4WYQB 4F9CB 4F6MA 3M99B 1N36E 3EQ1A 2ODRD 1DI2A 2YRKA 2G7HA 2UXDE 2JY9A 2EMCA 2LUPB 2ADRA 2EN6A 1ZBQA 1AAYA 1I94E 5ADZA 2LVHA 4WSGA 5KL6A 2DLKA 4HEIA 1EKZA 2ODRC 2EPPA 1X3CA 3BBGA 1EH7A 4R2QA 2J7JA 2I9IA 2LMZA 4DV0E 1WRJA 1MGTA 3IWDA 2YTEA 2DMIA 2ELYA 2B3TB 1PJQA 4BMJA 2FGGA 3VHTB 2ENCA 4R2AA 2DLQA 2LCEA 2L3CA 4DR7E 1RMDA 4DR6E 2M7QA 1YPNA 2RPCA 3UK3C 4DR2E 4NHRA 2UUBE 4LFCE 2YRHA 2UUAE 2EPMX 5AASA 2LTSA 1UBDC 1YYKA 2LUQA 4LF7E 1JK1A 2ENHA 3VYXA 2EPLX 2V83A 2LO3A 1YSAC 2FV4B 1A1JA 1EH8A 1EH6A 2EMFA 4TUGA 2EN3A 2K7IA 2EM6A 1FJGE 4MLQA 3LMLA 1SR9A 2R1FA 4LTYA 5AC5A 1XMQE 2EMWA 2YWQA 3C6MA 1T38A 3HQ1A 5KL7A 2EPUA 1WHNA 1ZU1A 2RSMA 2EN2A 4R2CA 1WHQA 1ZBTA 1J5EE 4RHBB 4B3ME 4N4RB 2EL4A 2KOUA 4Q35B 1YZ9A 3L00A 2V87A 4BCAA 2EPCA 2YTJA 2NABA 1IMUA 5LLQA 4ZYDA 2EPNA 1O0WA 2L2KB 2WZOA 4WXDA 4B3TE 4WXCA 3TQMA 3KZYA 2YTQA 5LL6R 2MKNA 2DGCA 4LF4E 1NEIA 1NCSA 2DMYA 4DUZE 4JI8E 4DV5E 2EM8A 3VYYA 3C4BA 5LMNE 1N32E 4YHHE 5A2QC 4ZYHA 2WCC3 1A1GA 2BBGA 2YTGA 3AV0A 2EMBA 2ZM6E 1A1LA 3ZOQB 2CTDA 4RH8A 4F9BB 3OMLA 4DUYE 2E1MA 5AE1A 5A6BD 1J26A 1N3GA 3H09A 4FK5C 4LFAE 2RS7A 2MC5A 2WBSA 2VE7C 4JI5E 5IV8B 1FKAE 4F54A 4NXME 3DJWA 2VRDA 2E5LE 4DV2E 2EL6A 2B7TA 1DQ3A 1WXRA 2M1SA 4ZYEA 2MC6A 2DIXA 2EOEA 4L8NA 1WJPA 4ZYGA 3J80C 4DV3E 1T4NA 2IHR1 4OOGC 5KL5A 1T39A 4X66E 2DSYA 4JI1E 2UXBE 4DV7E 2EOFA 1UHZA 4F6NA 2KHXA 4LF9E 3HXLA 1A1IA 1QU6A 3T1HE 2GLIA 4M30A 2EN1A 2EM9A 2EOZA 2EMIA 1XNQE 5AE3A 2EOOA 3BIDA 4JI4E 1LLMC 2V86A 3MHHC 2KONA 5BR8E 3F6GA 3HTXA 2A25A 3HPZA 1BB8A 1HR0E 3AUZA 2L33A 1B69A 4X62E 4MLVA 3EPHA 2EPZA 5KL2A 2RQLA 2M9AA 4F2JC 2RS6A 4M2ZA 3VK6A 2VQEE 2YTIA 4B3SE 2EM4A 2PRTA 4NZVA 4GZNC 5DNYA 3ADIA 2EJ4A 2EPKX 2MKDA 2EMAA 2EM0A 2V88A 1YFHA 2RTXA 3FIGA 1PJSA 1BBGA 4DR5E 1IQSA 2NA2A 2EOJA 3ECRA 1SFEA 2M4IA 4JI2E 2YTOA 2YSOA 4GEQB 4K0KE 2YRMA 2L2NA 2EN7A 4HTGA 4DV4E 1TF6A 2L92A 5A6JA 4JV5E 3LLHA 4BS9A 1G2DC 1HNXE 3C4TA 2EN4A 5A6AA 2EPOA 2EOQA 2YSPA 3MHSC 3ADJA 4LF8E 2I13A 2EMGA 4Q28A 2NUFA 4DR4E 4O4KA 2HGHA 2B9DA 2EMHA 5IT9C 1MEYC 5F3WA 2HHHE 2UXCE 2BB8A 2N3GA 4L5NC 2HC5A 2LJHA 3EPJA 2EMLA 5AC4A 1PJTA 4J8ZA 1ZR9A 1PDAA 2H36X 2LT7A 4R03A 1T4LB 4B3RE 4DV6E 3THNA 2JOXA 2EORA 2EMZA 3EPLA 1A1KA 4DMIA 2YTPA 1IQOA 2EOMA 2EWLA 1T4OA 1QNTA 2JPAA 5A6BA 2EM2A 2EN8A 5IWAE 3F6HA 4KWYA 2K4VA 1UN6B 3JAMC 3RMPA 2JYAA 5KL3A 1GTKA 4DR3E 2YTFA 3JTZA 1G2FC 5AE2A 2EE8A 1IBME 4R2EA 2Q8UA 2YTDA 4LU9A 2JWOA 4YY3E 3JU0A 4WPYA 4F9AB 4X65E 4O24A 4LFBE 4TUIA 2EOHA 4R2DA 1X6FA 1X6EA 1YYOA 1Z1BA 3KWRA 3IWBA 2EQ1A 4M9VC 2YTNA 1GZ6A 4I8OA 1YUJA 2VF1A 2EP3A 1KJKA 2L2MA 2YU5A 1TF3A 4DR1E 3BGHA 1STUA 2EPXA 2R76A 1X5WA 4KZSA 1GQEA 1X6HA 4R2SA 1P47A 2EMYA 4NXNE 2EQ0A 4P7DA 2EMKA 1N33E 2FTXB 1XMOE 1N34E 1DGCA 4X64E 4KHPE 2RSIA 2HJJA 4AQYE 2EOYA 2CSHA 1HNZE 2JXPA 3J81C 1ZAAC 5LMUE 2V89A 1RC7A 4P78A 2EPAA 5T6JA 2EMXA 2D9HA 2ENAA 3HPSA 4IS1C 2EM5A 2YT4A 5KL4A 5CFFE 2DRPA 2UU9E 2CT1A 2WBTA 4DV1E 2WBUA 3EPKA 2DB2A 4WX9A 1YYWA 2LRSA 4X8WA 2UUCE 4JI6E 4WFTA 2LJUA 4JI0E 1JK2A 1UILA
chains in the Genus database with same CATH topology
2LJUA 2JYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LJU A;  2JYA A; 
#chains in the Genus database with same CATH topology
 2EOX A;  4X9J A;  1L4S A;  2YZT A;  4BBY A;  4OX9 E;  2L3J A;  2EOI A;  1KYQ A;  4LF5 E;  2LV2 A;  1PKP A;  4R2P A;  1A1F A;  3KZZ A;  2EM7 A;  2MDG A;  2NUG A;  2N3H A;  1F2I G;  3ADG A;  4BHB A;  1X47 A;  3ADL A;  2VQF E;  2LBS B;  1YUI A;  2GPI A;  3MSW A;  1XNR E;  5TSE A;  1TN9 A;  4LF6 E;  4O5G A;  2EOS A;  4JI7 E;  4BC9 A;  2JVA A;  2LTR A;  4GKJ E;  2EZ6 A;  1A1H A;  4WSP A;  3K6Q A;  3T1Y E;  5IXM B;  3P1X A;  4JI3 E;  1AH5 A;  2GHF A;  2L8T A;  4DKK A;  2JR1 A;  2JP9 A;  3OTO E;  2L6M A;  2EPR A;  4M0V A;  2CPN A;  3THO B;  4JYA E;  4IJD A;  1HNW E;  2F4V E;  2MDR A;  1BBO A;  2N8X A;  3QG5 C;  2JOB A;  2EM3 A;  2YPN A;  1IBL E;  2EQ3 A;  2V85 A;  5FLX C;  3DF6 A;  4GKK E;  3IWC A;  4BC7 A;  3J7A G;  1RQ0 A;  1X49 A;  4R2R A;  2LE2 A;  3BF2 A;  2NUE A;  3C6K A;  2YU8 A;  2ELZ A;  3J7Y p;  2EL5 A;  4BHC A;  2F8B A;  2E72 A;  4O43 A;  2V8Q B;  1X48 A;  4R8O A;  5A6K A;  1IBK E;  5A69 A;  2B7V A;  4WYQ B;  4F9C B;  4F6M A;  3M99 B;  1N36 E;  3EQ1 A;  2ODR D;  1DI2 A;  2YRK A;  2G7H A;  2UXD E;  2JY9 A;  2EMC A;  2LUP B;  2ADR A;  2EN6 A;  1ZBQ A;  1AAY A;  1I94 E;  5ADZ A;  2LVH A;  4WSG A;  5KL6 A;  2DLK A;  4HEI A;  1EKZ A;  2ODR C;  2EPP A;  1X3C A;  3BBG A;  1EH7 A;  4R2Q A;  2J7J A;  2I9I A;  2LMZ A;  4DV0 E;  1WRJ A;  1MGT A;  3IWD A;  2YTE A;  2DMI A;  2ELY A;  2B3T B;  1PJQ A;  4BMJ A;  2FGG A;  3VHT B;  2ENC A;  4R2A A;  2DLQ A;  2LCE A;  2L3C A;  4DR7 E;  1RMD A;  4DR6 E;  2M7Q A;  1YPN A;  2RPC A;  3UK3 C;  4DR2 E;  4NHR A;  2UUB E;  4LFC E;  2YRH A;  2UUA E;  2EPM X;  5AAS A;  2LTS A;  1UBD C;  1YYK A;  2LUQ A;  4LF7 E;  1JK1 A;  2ENH A;  3VYX A;  2EPL X;  2V83 A;  2LO3 A;  1YSA C;  2FV4 B;  1A1J A;  1EH8 A;  1EH6 A;  2EMF A;  4TUG A;  2EN3 A;  2K7I A;  2EM6 A;  1FJG E;  4MLQ A;  3LML A;  1SR9 A;  2R1F A;  4LTY A;  5AC5 A;  1XMQ E;  2EMW A;  2YWQ A;  3C6M A;  1T38 A;  3HQ1 A;  5KL7 A;  2EPU A;  1WHN A;  1ZU1 A;  2RSM A;  2EN2 A;  4R2C A;  1WHQ A;  1ZBT A;  1J5E E;  4RHB B;  4B3M E;  4N4R B;  2EL4 A;  2KOU A;  4Q35 B;  1YZ9 A;  3L00 A;  2V87 A;  4BCA A;  2EPC A;  2YTJ A;  2NAB A;  1IMU A;  5LLQ A;  4ZYD A;  2EPN A;  1O0W A;  2L2K B;  2WZO A;  4WXD A;  4B3T E;  4WXC A;  3TQM A;  3KZY A;  2YTQ A;  5LL6 R;  2MKN A;  2DGC A;  4LF4 E;  1NEI A;  1NCS A;  2DMY A;  4DUZ E;  4JI8 E;  4DV5 E;  2EM8 A;  3VYY A;  3C4B A;  5LMN E;  1N32 E;  4YHH E;  5A2Q C;  4ZYH A;  2WCC 3;  1A1G A;  2BBG A;  2YTG A;  3AV0 A;  2EMB A;  2ZM6 E;  1A1L A;  3ZOQ B;  2CTD A;  4RH8 A;  4F9B B;  3OML A;  4DUY E;  2E1M A;  5AE1 A;  5A6B D;  1J26 A;  1N3G A;  3H09 A;  4FK5 C;  4LFA E;  2RS7 A;  2MC5 A;  2WBS A;  2VE7 C;  4JI5 E;  5IV8 B;  1FKA E;  4F54 A;  4NXM E;  3DJW A;  2VRD A;  2E5L E;  4DV2 E;  2EL6 A;  2B7T A;  1DQ3 A;  1WXR A;  2M1S A;  4ZYE A;  2MC6 A;  2DIX A;  2EOE A;  4L8N A;  1WJP A;  4ZYG A;  3J80 C;  4DV3 E;  1T4N A;  2IHR 1;  4OOG C;  5KL5 A;  1T39 A;  4X66 E;  2DSY A;  4JI1 E;  2UXB E;  4DV7 E;  2EOF A;  1UHZ A;  4F6N A;  2KHX A;  4LF9 E;  3HXL A;  1A1I A;  1QU6 A;  3T1H E;  2GLI A;  4M30 A;  2EN1 A;  2EM9 A;  2EOZ A;  2EMI A;  1XNQ E;  5AE3 A;  2EOO A;  3BID A;  4JI4 E;  1LLM C;  2V86 A;  3MHH C;  2KON A;  5BR8 E;  3F6G A;  3HTX A;  2A25 A;  3HPZ A;  1BB8 A;  1HR0 E;  3AUZ A;  2L33 A;  1B69 A;  4X62 E;  4MLV A;  3EPH A;  2EPZ A;  5KL2 A;  2RQL A;  2M9A A;  4F2J C;  2RS6 A;  4M2Z A;  3VK6 A;  2VQE E;  2YTI A;  4B3S E;  2EM4 A;  2PRT A;  4NZV A;  4GZN C;  5DNY A;  3ADI A;  2EJ4 A;  2EPK X;  2MKD A;  2EMA A;  2EM0 A;  2V88 A;  1YFH A;  2RTX A;  3FIG A;  1PJS A;  1BBG A;  4DR5 E;  1IQS A;  2NA2 A;  2EOJ A;  3ECR A;  1SFE A;  2M4I A;  4JI2 E;  2YTO A;  2YSO A;  4GEQ B;  4K0K E;  2YRM A;  2L2N A;  2EN7 A;  4HTG A;  4DV4 E;  1TF6 A;  2L92 A;  5A6J A;  4JV5 E;  3LLH A;  4BS9 A;  1G2D C;  1HNX E;  3C4T A;  2EN4 A;  5A6A A;  2EPO A;  2EOQ A;  2YSP A;  3MHS C;  3ADJ A;  4LF8 E;  2I13 A;  2EMG A;  4Q28 A;  2NUF A;  4DR4 E;  4O4K A;  2HGH A;  2B9D A;  2EMH A;  5IT9 C;  1MEY C;  5F3W A;  2HHH E;  2UXC E;  2BB8 A;  2N3G A;  4L5N C;  2HC5 A;  2LJH A;  3EPJ A;  2EML A;  5AC4 A;  1PJT A;  4J8Z A;  1ZR9 A;  1PDA A;  2H36 X;  2LT7 A;  4R03 A;  1T4L B;  4B3R E;  4DV6 E;  3THN A;  2JOX A;  2EOR A;  2EMZ A;  3EPL A;  1A1K A;  4DMI A;  2YTP A;  1IQO A;  2EOM A;  2EWL A;  1T4O A;  1QNT A;  2JPA A;  5A6B A;  2EM2 A;  2EN8 A;  5IWA E;  3F6H A;  4KWY A;  2K4V A;  1UN6 B;  3JAM C;  3RMP A;  2JYA A;  5KL3 A;  1GTK A;  4DR3 E;  2YTF A;  3JTZ A;  1G2F C;  5AE2 A;  2EE8 A;  1IBM E;  4R2E A;  2Q8U A;  2YTD A;  4LU9 A;  2JWO A;  4YY3 E;  3JU0 A;  4WPY A;  4F9A B;  4X65 E;  4O24 A;  4LFB E;  4TUI A;  2EOH A;  4R2D A;  1X6F A;  1X6E A;  1YYO A;  1Z1B A;  3KWR A;  3IWB A;  2EQ1 A;  4M9V C;  2YTN A;  1GZ6 A;  4I8O A;  1YUJ A;  2VF1 A;  2EP3 A;  1KJK A;  2L2M A;  2YU5 A;  1TF3 A;  4DR1 E;  3BGH A;  1STU A;  2EPX A;  2R76 A;  1X5W A;  4KZS A;  1GQE A;  1X6H A;  4R2S A;  1P47 A;  2EMY A;  4NXN E;  2EQ0 A;  4P7D A;  2EMK A;  1N33 E;  2FTX B;  1XMO E;  1N34 E;  1DGC A;  4X64 E;  4KHP E;  2RSI A;  2HJJ A;  4AQY E;  2EOY A;  2CSH A;  1HNZ E;  2JXP A;  3J81 C;  1ZAA C;  5LMU E;  2V89 A;  1RC7 A;  4P78 A;  2EPA A;  5T6J A;  2EMX A;  2D9H A;  2ENA A;  3HPS A;  4IS1 C;  2EM5 A;  2YT4 A;  5KL4 A;  5CFF E;  2DRP A;  2UU9 E;  2CT1 A;  2WBT A;  4DV1 E;  2WBU A;  3EPK A;  2DB2 A;  4WX9 A;  1YYW A;  2LRS A;  4X8W A;  2UUC E;  4JI6 E;  4WFT A;  2LJU A;  4JI0 E;  1JK2 A;  1UIL A; 
#chains in the Genus database with same CATH homology
 2LJU A;  2JYA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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