4HEIA

2a x-ray structure of hpf from vibrio cholerae
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
92
structure length
92
Chain Sequence
MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAEIHAHADDENMYAAIDSLVDKLVRQLNKHKEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RIBOSOME HIBERNATION PROTEIN YHBH
publication title Structure of Vibrio cholerae ribosome hibernation promoting factor.
pubmed doi rcsb
molecule tags Translation
total genus 28
structure length 92
sequence length 92
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 4heiA00
3TQMA 1N3GA 1L4SA 2YWQA 1IMUA 4HEIA 2RQLA
chains in the Genus database with same CATH superfamily
2ENHA 3QG5C 2EMCA 3ADJA 2KOUA 5LMNE 2EL4A 3HQ1A 3TQMA 2EOQA 2EPXA 2EE8A 2YTEA 2EPPA 1WHQA 1P47A 3MHHC 4X8WA 4O5GA 2EMKA 4NHRA 1YZ9A 4F9AB 2KHXA 2N3HA 1SR9A 2ZM6E 4Q35B 4DR3E 1UHZA 1X48A 1J26A 2R1FA 2JOBA 3M99B 1BBGA 4DV2E 1FKAE 4ZYDA 3VYYA 4I8OA 3JTZA 2N3GA 3AV0A 3EPKA 1YYWA 1JK2A 2EN1A 2RSIA 2M7QA 1X6EA 2YTJA 2LMZA 2YU8A 4DV1E 4M30A 4DV0E 1GZ6A 2R76A 2JOXA 4WXCA 1UILA 2LTRA 4O4KA 2FV4B 4GKJE 1TN9A 5T6JA 2EPOA 5AE1A 4DV4E 4AQYE 3J81C 3VYXA 4BS9A 4R2SA 4RH8A 2RTXA 2EM7A 2MKDA 2GLIA 2UUCE 4LF8E 1WRJA 2JWOA 2M9AA 5DNYA 2LTSA 2B7TA 3KZZA 5AE3A 3BF2A 2YTIA 3HXLA 2L2NA 1KYQA 4B3TE 3EPHA 2LRSA 4NXNE 2BB8A 4ZYEA 1HNWE 2EMHA 3IWDA 1N33E 2VRDA 2EWLA 4TUIA 2L92A 1A1GA 4B3SE 3JAMC 2EL6A 4R2QA 1STUA 5IT9C 2CTDA 1ZR9A 3J80C 2EM0A 4M2ZA 3THNA 3BIDA 2RS6A 1PKPA 2YRHA 4GKKE 2F8BA 2EPLX 1T39A 2I13A 2M1SA 2EM8A 2YPNA 2DGCA 3HPSA 4R8OA 2EMXA 2UXCE 2JR1A 4FK5C 1T4OA 2LJHA 2YTDA 2EM4A 2FGGA 2YRKA 2N8XA 2HC5A 4F6MA 4WXDA 3ADIA 2GPIA 4LF5E 1WJPA 2MKNA 2EPUA 4LF9E 1RQ0A 1TF6A 1T38A 2CT1A 2I9IA 2EORA 2EMWA 3HTXA 2MDGA 3OMLA 1MGTA 1GQEA 2EN4A 1YYOA 1T4NA 1ZBTA 2UUBE 4DV7E 4JI6E 4P7DA 4ZYGA 4DR2E 1O0WA 1XMQE 2G7HA 1LLMC 4L8NA 4X65E 4Q28A 1EH6A 2E72A 2B9DA 2EOEA 3VHTB 2NUEA 5A69A 4R2PA 2VF1A 3MHSC 5BR8E 4JI2E 1IQSA 2M4IA 1G2FC 5TSEA 4JI0E 2E5LE 2YTNA 5IV8B 4F9BB 2DB2A 1X3CA 2YTFA 4DUZE 3F6HA 2UU9E 2EQ3A 1DQ3A 2LE2A 2MC6A 2V85A 4JI7E 5AASA 2V86A 2ODRD 1IMUA 4IJDA 1ZU1A 3H09A 3LLHA 2YRMA 2DIXA 4R2RA 4JI4E 2YSPA 1YYKA 1IBKE 3P1XA 2V83A 1AH5A 3EPLA 4RHBB 4F9CB 2B7VA 4LU9A 2ELZA 2ELYA 3C4TA 2EOFA 2WBTA 2CSHA 2YTPA 2EZ6A 4LFAE 2EOJA 1AAYA 2EMZA 1IQOA 3DF6A 2A25A 4HTGA 1B69A 3AUZA 2EPKX 1I94E 4KZSA 2YWQA 2MDRA 1RMDA 5LMUE 2K7IA 2KONA 2MC5A 3THOB 4X62E 3FIGA 5AC4A 1N32E 1PJSA 2LJUA 3IWBA 4F2JC 1X6FA 4R03A 4IS1C 4BBYA 3UK3C 2NABA 4HEIA 2NA2A 5CFFE 2HJJA 2EQ0A 2EPNA 2Q8UA 2YU5A 1QNTA 1NCSA 2EPAA 4R2EA 4LFBE 5KL5A 4DR5E 2UXDE 1A1JA 1KJKA 2LUQA 4BC7A 2EMBA 2EM5A 2L8TA 2FTXB 2EOZA 2DMIA 3OTOE 2PRTA 1XMOE 1X49A 2JVAA 1YUJA 4GEQB 5FLXC 1FJGE 1PDAA 4L5NC 3KZYA 2JXPA 1PJTA 2VQEE 4O43A 3HPZA 2EMYA 3LMLA 1Z1BA 2EM3A 1SFEA 2LBSB 2BBGA 2ENAA 2RS7A 2RPCA 3MSWA 4K0KE 2J7JA 4WSGA 1N34E 1MEYC 5KL6A 2EM9A 1IBLE 3RMPA 2IHR1 4X9JA 2CPNA 5KL3A 1TF3A 2LUPB 1BBOA 3ADGA 4ZYHA 1F2IG 5F3WA 5A2QC 4DR1E 1EKZA 4DKKA 2UXBE 3KWRA 2K4VA 5A6BA 4TUGA 2EPMX 4JI8E 2JY9A 3C6MA 2EN8A 2EOSA 3J7AG 1ZBQA 4YY3E 4R2CA 1GTKA 2WBSA 3F6GA 3EQ1A 2EQ1A 1XNQE 2ODRC 4KWYA 4YHHE 2EOXA 1YPNA 1HR0E 3C4BA 4LF7E 5AE2A 2D9HA 2EOHA 2YSOA 3T1YE 2EPZA 4DR4E 1HNXE 2EOIA 2EM6A 2YT4A 5A6AA 2V87A 4JV5E 4P78A 2EM2A 4JI1E 5KL2A 2VE7C 1QU6A 1N3GA 1NEIA 2L3CA 4NZVA 2EMGA 4X66E 2YTQA 4O24A 3J7Yp 1DI2A 4WYQB 2F4VE 2DRPA 2EPCA 1JK1A 2DLKA 4JI3E 4BC9A 2EOMA 1ZAAC 2EN3A 2ADRA 3C6KA 1EH7A 2V8QB 4LTYA 2L3JA 5IXMB 4DR7E 2EN7A 2JPAA 4LF6E 2HGHA 2EOOA 2EN6A 4WPYA 4R2AA 3ADLA 2EJ4A 1RC7A 2LV2A 3VK6A 2LT7A 4B3RE 3IWCA 4DV6E 2H36X 1PJQA 2UUAE 3T1HE 1A1FA 4WSPA 2YTOA 4J8ZA 2NUGA 4DUYE 1T4LB 2EOYA 1A1HA 1L4SA 4JYAE 3ZOQB 2JP9A 2EN2A 4OX9E 1EH8A 4F6NA 1A1KA 2HHHE 5A6BD 1J5EE 4BCAA 4F54A 2WCC3 2L2MA 2L2KB 1DGCA 1UBDC 4R2DA 2EMAA 2EP3A 5KL7A 1YFHA 1BB8A 5A6JA 4MLQA 2JYAA 1X47A 4WX9A 1YSAC 2WBUA 3ECRA 2DLQA 1WHNA 4KHPE 5ADZA 1IBME 4M9VC 1G2DC 3DJWA 3BBGA 4LFCE 1X6HA 4MLVA 5IWAE 2ENCA 1WXRA 4N4RB 2LO3A 4JI5E 4OOGC 4NXME 5LL6R 2B3TB 1A1IA 2RSMA 4X64E 3L00A 4BHBA 1UN6B 2LCEA 4BMJA 4DV5E 4WFTA 2LVHA 2VQFE 2WZOA 5A6KA 4DR6E 2L6MA 2EMLA 1X5WA 2V89A 3BGHA 2EL5A 2YTGA 1HNZE 2YZTA 2L33A 2EMFA 5AC5A 3EPJA 1YUIA 2DMYA 4BHCA 3JU0A 4DV3E 4LF4E 1N36E 2RQLA 3K6QA 1A1LA 2EPRA 4B3ME 2V88A 2EMIA 4M0VA 4DMIA 5LLQA 4GZNC 1XNRE 2GHFA 2NUFA 5KL4A 2DSYA 2E1MA
chains in the Genus database with same CATH topology
3TQMA 1N3GA 1L4SA 2YWQA 1IMUA 4HEIA 2RQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TQM A;  1N3G A;  1L4S A;  2YWQ A;  1IMU A;  4HEI A;  2RQL A; 
#chains in the Genus database with same CATH topology
 2ENH A;  3QG5 C;  2EMC A;  3ADJ A;  2KOU A;  5LMN E;  2EL4 A;  3HQ1 A;  3TQM A;  2EOQ A;  2EPX A;  2EE8 A;  2YTE A;  2EPP A;  1WHQ A;  1P47 A;  3MHH C;  4X8W A;  4O5G A;  2EMK A;  4NHR A;  1YZ9 A;  4F9A B;  2KHX A;  2N3H A;  1SR9 A;  2ZM6 E;  4Q35 B;  4DR3 E;  1UHZ A;  1X48 A;  1J26 A;  2R1F A;  2JOB A;  3M99 B;  1BBG A;  4DV2 E;  1FKA E;  4ZYD A;  3VYY A;  4I8O A;  3JTZ A;  2N3G A;  3AV0 A;  3EPK A;  1YYW A;  1JK2 A;  2EN1 A;  2RSI A;  2M7Q A;  1X6E A;  2YTJ A;  2LMZ A;  2YU8 A;  4DV1 E;  4M30 A;  4DV0 E;  1GZ6 A;  2R76 A;  2JOX A;  4WXC A;  1UIL A;  2LTR A;  4O4K A;  2FV4 B;  4GKJ E;  1TN9 A;  5T6J A;  2EPO A;  5AE1 A;  4DV4 E;  4AQY E;  3J81 C;  3VYX A;  4BS9 A;  4R2S A;  4RH8 A;  2RTX A;  2EM7 A;  2MKD A;  2GLI A;  2UUC E;  4LF8 E;  1WRJ A;  2JWO A;  2M9A A;  5DNY A;  2LTS A;  2B7T A;  3KZZ A;  5AE3 A;  3BF2 A;  2YTI A;  3HXL A;  2L2N A;  1KYQ A;  4B3T E;  3EPH A;  2LRS A;  4NXN E;  2BB8 A;  4ZYE A;  1HNW E;  2EMH A;  3IWD A;  1N33 E;  2VRD A;  2EWL A;  4TUI A;  2L92 A;  1A1G A;  4B3S E;  3JAM C;  2EL6 A;  4R2Q A;  1STU A;  5IT9 C;  2CTD A;  1ZR9 A;  3J80 C;  2EM0 A;  4M2Z A;  3THN A;  3BID A;  2RS6 A;  1PKP A;  2YRH A;  4GKK E;  2F8B A;  2EPL X;  1T39 A;  2I13 A;  2M1S A;  2EM8 A;  2YPN A;  2DGC A;  3HPS A;  4R8O A;  2EMX A;  2UXC E;  2JR1 A;  4FK5 C;  1T4O A;  2LJH A;  2YTD A;  2EM4 A;  2FGG A;  2YRK A;  2N8X A;  2HC5 A;  4F6M A;  4WXD A;  3ADI A;  2GPI A;  4LF5 E;  1WJP A;  2MKN A;  2EPU A;  4LF9 E;  1RQ0 A;  1TF6 A;  1T38 A;  2CT1 A;  2I9I A;  2EOR A;  2EMW A;  3HTX A;  2MDG A;  3OML A;  1MGT A;  1GQE A;  2EN4 A;  1YYO A;  1T4N A;  1ZBT A;  2UUB E;  4DV7 E;  4JI6 E;  4P7D A;  4ZYG A;  4DR2 E;  1O0W A;  1XMQ E;  2G7H A;  1LLM C;  4L8N A;  4X65 E;  4Q28 A;  1EH6 A;  2E72 A;  2B9D A;  2EOE A;  3VHT B;  2NUE A;  5A69 A;  4R2P A;  2VF1 A;  3MHS C;  5BR8 E;  4JI2 E;  1IQS A;  2M4I A;  1G2F C;  5TSE A;  4JI0 E;  2E5L E;  2YTN A;  5IV8 B;  4F9B B;  2DB2 A;  1X3C A;  2YTF A;  4DUZ E;  3F6H A;  2UU9 E;  2EQ3 A;  1DQ3 A;  2LE2 A;  2MC6 A;  2V85 A;  4JI7 E;  5AAS A;  2V86 A;  2ODR D;  1IMU A;  4IJD A;  1ZU1 A;  3H09 A;  3LLH A;  2YRM A;  2DIX A;  4R2R A;  4JI4 E;  2YSP A;  1YYK A;  1IBK E;  3P1X A;  2V83 A;  1AH5 A;  3EPL A;  4RHB B;  4F9C B;  2B7V A;  4LU9 A;  2ELZ A;  2ELY A;  3C4T A;  2EOF A;  2WBT A;  2CSH A;  2YTP A;  2EZ6 A;  4LFA E;  2EOJ A;  1AAY A;  2EMZ A;  1IQO A;  3DF6 A;  2A25 A;  4HTG A;  1B69 A;  3AUZ A;  2EPK X;  1I94 E;  4KZS A;  2YWQ A;  2MDR A;  1RMD A;  5LMU E;  2K7I A;  2KON A;  2MC5 A;  3THO B;  4X62 E;  3FIG A;  5AC4 A;  1N32 E;  1PJS A;  2LJU A;  3IWB A;  4F2J C;  1X6F A;  4R03 A;  4IS1 C;  4BBY A;  3UK3 C;  2NAB A;  4HEI A;  2NA2 A;  5CFF E;  2HJJ A;  2EQ0 A;  2EPN A;  2Q8U A;  2YU5 A;  1QNT A;  1NCS A;  2EPA A;  4R2E A;  4LFB E;  5KL5 A;  4DR5 E;  2UXD E;  1A1J A;  1KJK A;  2LUQ A;  4BC7 A;  2EMB A;  2EM5 A;  2L8T A;  2FTX B;  2EOZ A;  2DMI A;  3OTO E;  2PRT A;  1XMO E;  1X49 A;  2JVA A;  1YUJ A;  4GEQ B;  5FLX C;  1FJG E;  1PDA A;  4L5N C;  3KZY A;  2JXP A;  1PJT A;  2VQE E;  4O43 A;  3HPZ A;  2EMY A;  3LML A;  1Z1B A;  2EM3 A;  1SFE A;  2LBS B;  2BBG A;  2ENA A;  2RS7 A;  2RPC A;  3MSW A;  4K0K E;  2J7J A;  4WSG A;  1N34 E;  1MEY C;  5KL6 A;  2EM9 A;  1IBL E;  3RMP A;  2IHR 1;  4X9J A;  2CPN A;  5KL3 A;  1TF3 A;  2LUP B;  1BBO A;  3ADG A;  4ZYH A;  1F2I G;  5F3W A;  5A2Q C;  4DR1 E;  1EKZ A;  4DKK A;  2UXB E;  3KWR A;  2K4V A;  5A6B A;  4TUG A;  2EPM X;  4JI8 E;  2JY9 A;  3C6M A;  2EN8 A;  2EOS A;  3J7A G;  1ZBQ A;  4YY3 E;  4R2C A;  1GTK A;  2WBS A;  3F6G A;  3EQ1 A;  2EQ1 A;  1XNQ E;  2ODR C;  4KWY A;  4YHH E;  2EOX A;  1YPN A;  1HR0 E;  3C4B A;  4LF7 E;  5AE2 A;  2D9H A;  2EOH A;  2YSO A;  3T1Y E;  2EPZ A;  4DR4 E;  1HNX E;  2EOI A;  2EM6 A;  2YT4 A;  5A6A A;  2V87 A;  4JV5 E;  4P78 A;  2EM2 A;  4JI1 E;  5KL2 A;  2VE7 C;  1QU6 A;  1N3G A;  1NEI A;  2L3C A;  4NZV A;  2EMG A;  4X66 E;  2YTQ A;  4O24 A;  3J7Y p;  1DI2 A;  4WYQ B;  2F4V E;  2DRP A;  2EPC A;  1JK1 A;  2DLK A;  4JI3 E;  4BC9 A;  2EOM A;  1ZAA C;  2EN3 A;  2ADR A;  3C6K A;  1EH7 A;  2V8Q B;  4LTY A;  2L3J A;  5IXM B;  4DR7 E;  2EN7 A;  2JPA A;  4LF6 E;  2HGH A;  2EOO A;  2EN6 A;  4WPY A;  4R2A A;  3ADL A;  2EJ4 A;  1RC7 A;  2LV2 A;  3VK6 A;  2LT7 A;  4B3R E;  3IWC A;  4DV6 E;  2H36 X;  1PJQ A;  2UUA E;  3T1H E;  1A1F A;  4WSP A;  2YTO A;  4J8Z A;  2NUG A;  4DUY E;  1T4L B;  2EOY A;  1A1H A;  1L4S A;  4JYA E;  3ZOQ B;  2JP9 A;  2EN2 A;  4OX9 E;  1EH8 A;  4F6N A;  1A1K A;  2HHH E;  5A6B D;  1J5E E;  4BCA A;  4F54 A;  2WCC 3;  2L2M A;  2L2K B;  1DGC A;  1UBD C;  4R2D A;  2EMA A;  2EP3 A;  5KL7 A;  1YFH A;  1BB8 A;  5A6J A;  4MLQ A;  2JYA A;  1X47 A;  4WX9 A;  1YSA C;  2WBU A;  3ECR A;  2DLQ A;  1WHN A;  4KHP E;  5ADZ A;  1IBM E;  4M9V C;  1G2D C;  3DJW A;  3BBG A;  4LFC E;  1X6H A;  4MLV A;  5IWA E;  2ENC A;  1WXR A;  4N4R B;  2LO3 A;  4JI5 E;  4OOG C;  4NXM E;  5LL6 R;  2B3T B;  1A1I A;  2RSM A;  4X64 E;  3L00 A;  4BHB A;  1UN6 B;  2LCE A;  4BMJ A;  4DV5 E;  4WFT A;  2LVH A;  2VQF E;  2WZO A;  5A6K A;  4DR6 E;  2L6M A;  2EML A;  1X5W A;  2V89 A;  3BGH A;  2EL5 A;  2YTG A;  1HNZ E;  2YZT A;  2L33 A;  2EMF A;  5AC5 A;  3EPJ A;  1YUI A;  2DMY A;  4BHC A;  3JU0 A;  4DV3 E;  4LF4 E;  1N36 E;  2RQL A;  3K6Q A;  1A1L A;  2EPR A;  4B3M E;  2V88 A;  2EMI A;  4M0V A;  4DMI A;  5LLQ A;  4GZN C;  1XNR E;  2GHF A;  2NUF A;  5KL4 A;  2DSY A;  2E1M A; 
#chains in the Genus database with same CATH homology
 3TQM A;  1N3G A;  1L4S A;  2YWQ A;  1IMU A;  4HEI A;  2RQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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