2BBGA

Ragweed pollen allergen from ambrosia trifida v, nmr, 30 structures
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
total genus 6
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 2bbgA00
3BBGA 2BBGA 1BBGA
chains in the Genus database with same CATH superfamily
5AC5A 2ADRA 2B9DA 2EMCA 2EMGA 2FTXB 4JI1E 4F9AB 3VYYA 3VYXA 2CPNA 4X62E 1N34E 2EM2A 2EM3A 4DR2E 2L2MA 4IJDA 4HEIA 4IS1C 3C6KA 2KHXA 1PKPA 2PRTA 3QG5C 3ADLA 2LTSA 4R2SA 2MDGA 3AUZA 1YPNA 2DLQA 2EL6A 5LMUE 1BBOA 3KZYA 1N33E 2LUQA 2CTDA 2YU5A 4P7DA 2EJ4A 2EE8A 1UILA 2EOXA 4LF6E 1KYQA 2M7QA 1SR9A 2EN4A 1A1KA 1GZ6A 5A2QC 2VF1A 2N3HA 4KZSA 4DV7E 2DMYA 2I13A 1BBGA 3J80C 2EOIA 2EWLA 5LLQA 1UHZA 1QNTA 2YRKA 2EMIA 4ZYDA 4BHBA 1XMOE 4DV1E 5IXMB 1DI2A 1A1FA 2EOFA 2YSOA 4N4RB 3ECRA 2GLIA 4LF4E 2L8TA 1AH5A 4BHCA 1DGCA 1XMQE 3F6GA 1WXRA 3THNA 5A69A 1YYWA 3L00A 5FLXC 2MDRA 2GPIA 2D9HA 2H36X 5IWAE 4F6NA 2EMFA 4X9JA 1X3CA 2LJUA 2LE2A 5T6JA 2RSMA 2EM8A 1KJKA 3HPZA 2VQEE 2EMLA 2CT1A 3RMPA 2LTRA 4LF7E 2M1SA 5KL3A 2EM5A 4M0VA 1YUJA 3FIGA 2EL5A 2EOMA 2NUFA 2YT4A 1YYOA 1IBKE 2BBGA 4F2JC 2YPNA 2JP9A 1HNWE 4WYQB 2EPRA 2B3TB 4L5NC 2EORA 3HTXA 2DIXA 4JYAE 2EMKA 5AE2A 1WHNA 3C6MA 2DLKA 2V8QB 1PDAA 5BR8E 2KONA 2ENHA 4NHRA 2V85A 1XNRE 2YTNA 1TF6A 4O43A 2NUGA 2EPCA 1T4NA 2EQ1A 3DF6A 4YHHE 4TUGA 2UUAE 2UXCE 1X47A 1FKAE 2N3GA 3MHHC 3BF2A 3VHTB 1PJTA 3ADGA 1RMDA 4ZYHA 1L4SA 4GKKE 2UXBE 2EM7A 2DGCA 2V87A 1YYKA 2YTGA 2WBUA 1T38A 4OOGC 5KL2A 1WJPA 1X5WA 5A6BD 1RC7A 2VE7C 2LBSB 2EPMX 2EM6A 2VQFE 4Q35B 3MHSC 5KL4A 2JOBA 1F2IG 2LRSA 4DKKA 2JOXA 2JY9A 2FV4B 2UUBE 3EPJA 1HR0E 2ELYA 3J7Yp 1LLMC 4LFBE 2WBSA 2LJHA 1RQ0A 2JVAA 4BS9A 3ADJA 2EPAA 2EPXA 4RHBB 4BBYA 3EPKA 4B3SE 4B3ME 4DMIA 4AQYE 2L33A 4DR7E 1G2FC 1FJGE 1UN6B 4LF8E 3OTOE 3M99B 4MLVA 4R03A 1A1JA 4BC7A 1HNXE 2EMAA 2NUEA 4R2DA 3THOB 2L3JA 4R2QA 1N36E 4DUZE 2YWQA 4DR1E 3ADIA 2HC5A 5A6JA 2V88A 5ADZA 2LCEA 1T4LB 4K0KE 3EQ1A 2EOOA 1IBME 3K6QA 1N32E 1J5EE 4DR4E 4YY3E 3LMLA 4DR6E 2GHFA 3HQ1A 2EQ0A 1YUIA 1YFHA 2DMIA 1QU6A 2EMWA 2F8BA 5KL5A 2ZM6E 2UUCE 1YZ9A 4WSGA 2EPOA 4LF5E 2YSPA 1EH8A 2LMZA 3KWRA 2UU9E 1J26A 2YTIA 4R2AA 3JTZA 5A6BA 1WRJA 2VRDA 2YTFA 1A1LA 5AE1A 1EH6A 3JAMC 4M30A 4JI2E 2E72A 2M4IA 2F4VE 2EM4A 2EPNA 2EPPA 2RS6A 3UK3C 2K7IA 4LFCE 2YTQA 4WXCA 3VK6A 4NXME 2EL4A 5IT9C 2YRHA 4L8NA 5CFFE 4NXNE 2EM0A 2YTDA 3IWBA 2DSYA 2WZOA 4JI7E 4JI0E 4ZYGA 2R76A 1B69A 1STUA 2DB2A 2EOSA 2WCC3 4R2RA 2EN3A 5AE3A 3P1XA 4DUYE 1GQEA 2EQ3A 4M9VC 4LFAE 2FGGA 1X6HA 2EOYA 2G7HA 2JXPA 2DRPA 2EOEA 2NA2A 5KL7A 4GEQB 4X66E 4GZNC 1ZBTA 4JI6E 4TUIA 1O0WA 4DV6E 4DR3E 3DJWA 1N3GA 3JU0A 2LV2A 4WX9A 4F6MA 2MC6A 1UBDC 3LLHA 3H09A 5DNYA 3HXLA 3T1YE 2EZ6A 1IMUA 1A1HA 2V86A 4BCAA 4FK5C 2RS7A 2ENAA 2L92A 4RH8A 2YTJA 1ZR9A 3AV0A 2LUPB 1SFEA 2BB8A 1ZU1A 4WXDA 1WHQA 2JPAA 1JK2A 2HGHA 4B3RE 4R2PA 4KHPE 2A25A 1TF3A 5AASA 2RTXA 1EKZA 1NEIA 3BBGA 2YTPA 4KWYA 4GKJE 1ZBQA 2YRMA 2YU8A 1NCSA 1X6FA 1GTKA 2K4VA 2JR1A 1BB8A 3KZZA 4LTYA 4JV5E 4DR5E 4LF9E 1XNQE 1IQOA 2EN8A 2EMHA 4F9BB 2L2NA 4DV0E 2EMZA 2JWOA 5KL6A 2JYAA 2V83A 4F54A 2V89A 1Z1BA 4JI5E 4X65E 2B7VA 2HJJA 2YTEA 5AC4A 2EP3A 2EOJA 3F6HA 3T1HE 1T4OA 1IQSA 1EH7A 2EN7A 4JI3E 4Q28A 3BIDA 1I94E 2CSHA 5TSEA 4F9CB 3EPHA 4B3TE 4WPYA 2YTOA 2MKDA 4O24A 1HNZE 4BC9A 1PJSA 2EPLX 3OMLA 1G2DC 4O5GA 1MEYC 1PJQA 4BMJA 2L6MA 1X48A 2R1FA 5LL6R 2HHHE 2RSIA 2IHR1 5F3WA 2KOUA 4P78A 3IWCA 4X64E 4OX9E 4ZYEA 4DV3E 1AAYA 1IBLE 2EN1A 5IV8B 4LU9A 1A1GA 2UXDE 2B7TA 2WBTA 2E5LE 1A1IA 5A6AA 4R8OA 1X49A 2RPCA 2I9IA 3C4BA 1JK1A 2M9AA 4NZVA 2EN2A 3J7AG 4J8ZA 1TN9A 2EOHA 2YZTA 2RQLA 3J81C 3TQMA 4JI4E 4M2ZA 4HTGA 2E1MA 2EMYA 1X6EA 3ZOQB 2EMXA 2EPZA 3IWDA 2ELZA 2EOZA 3MSWA 1DQ3A 4DV2E 2ODRC 3BGHA 4R2CA 2LO3A 2EN6A 2ENCA 4R2EA 2L2KB 2ODRD 2NABA 4O4KA 4WSPA 4DV4E 2L3CA 2EOQA 2J7JA 2N8XA 4MLQA 2MKNA 4WFTA 5LMNE 4I8OA 4X8WA 2LT7A 1P47A 3HPSA 3C4TA 2Q8UA 1ZAAC 5A6KA 2EPKX 1MGTA 2LVHA 2EPUA 4DV5E 1T39A 3EPLA 2MC5A 2EMBA 4JI8E 2EM9A 1YSAC
chains in the Genus database with same CATH topology
3BBGA 2BBGA 1BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBG A;  2BBG A;  1BBG A; 
#chains in the Genus database with same CATH topology
 5AC5 A;  2ADR A;  2B9D A;  2EMC A;  2EMG A;  2FTX B;  4JI1 E;  4F9A B;  3VYY A;  3VYX A;  2CPN A;  4X62 E;  1N34 E;  2EM2 A;  2EM3 A;  4DR2 E;  2L2M A;  4IJD A;  4HEI A;  4IS1 C;  3C6K A;  2KHX A;  1PKP A;  2PRT A;  3QG5 C;  3ADL A;  2LTS A;  4R2S A;  2MDG A;  3AUZ A;  1YPN A;  2DLQ A;  2EL6 A;  5LMU E;  1BBO A;  3KZY A;  1N33 E;  2LUQ A;  2CTD A;  2YU5 A;  4P7D A;  2EJ4 A;  2EE8 A;  1UIL A;  2EOX A;  4LF6 E;  1KYQ A;  2M7Q A;  1SR9 A;  2EN4 A;  1A1K A;  1GZ6 A;  5A2Q C;  2VF1 A;  2N3H A;  4KZS A;  4DV7 E;  2DMY A;  2I13 A;  1BBG A;  3J80 C;  2EOI A;  2EWL A;  5LLQ A;  1UHZ A;  1QNT A;  2YRK A;  2EMI A;  4ZYD A;  4BHB A;  1XMO E;  4DV1 E;  5IXM B;  1DI2 A;  1A1F A;  2EOF A;  2YSO A;  4N4R B;  3ECR A;  2GLI A;  4LF4 E;  2L8T A;  1AH5 A;  4BHC A;  1DGC A;  1XMQ E;  3F6G A;  1WXR A;  3THN A;  5A69 A;  1YYW A;  3L00 A;  5FLX C;  2MDR A;  2GPI A;  2D9H A;  2H36 X;  5IWA E;  4F6N A;  2EMF A;  4X9J A;  1X3C A;  2LJU A;  2LE2 A;  5T6J A;  2RSM A;  2EM8 A;  1KJK A;  3HPZ A;  2VQE E;  2EML A;  2CT1 A;  3RMP A;  2LTR A;  4LF7 E;  2M1S A;  5KL3 A;  2EM5 A;  4M0V A;  1YUJ A;  3FIG A;  2EL5 A;  2EOM A;  2NUF A;  2YT4 A;  1YYO A;  1IBK E;  2BBG A;  4F2J C;  2YPN A;  2JP9 A;  1HNW E;  4WYQ B;  2EPR A;  2B3T B;  4L5N C;  2EOR A;  3HTX A;  2DIX A;  4JYA E;  2EMK A;  5AE2 A;  1WHN A;  3C6M A;  2DLK A;  2V8Q B;  1PDA A;  5BR8 E;  2KON A;  2ENH A;  4NHR A;  2V85 A;  1XNR E;  2YTN A;  1TF6 A;  4O43 A;  2NUG A;  2EPC A;  1T4N A;  2EQ1 A;  3DF6 A;  4YHH E;  4TUG A;  2UUA E;  2UXC E;  1X47 A;  1FKA E;  2N3G A;  3MHH C;  3BF2 A;  3VHT B;  1PJT A;  3ADG A;  1RMD A;  4ZYH A;  1L4S A;  4GKK E;  2UXB E;  2EM7 A;  2DGC A;  2V87 A;  1YYK A;  2YTG A;  2WBU A;  1T38 A;  4OOG C;  5KL2 A;  1WJP A;  1X5W A;  5A6B D;  1RC7 A;  2VE7 C;  2LBS B;  2EPM X;  2EM6 A;  2VQF E;  4Q35 B;  3MHS C;  5KL4 A;  2JOB A;  1F2I G;  2LRS A;  4DKK A;  2JOX A;  2JY9 A;  2FV4 B;  2UUB E;  3EPJ A;  1HR0 E;  2ELY A;  3J7Y p;  1LLM C;  4LFB E;  2WBS A;  2LJH A;  1RQ0 A;  2JVA A;  4BS9 A;  3ADJ A;  2EPA A;  2EPX A;  4RHB B;  4BBY A;  3EPK A;  4B3S E;  4B3M E;  4DMI A;  4AQY E;  2L33 A;  4DR7 E;  1G2F C;  1FJG E;  1UN6 B;  4LF8 E;  3OTO E;  3M99 B;  4MLV A;  4R03 A;  1A1J A;  4BC7 A;  1HNX E;  2EMA A;  2NUE A;  4R2D A;  3THO B;  2L3J A;  4R2Q A;  1N36 E;  4DUZ E;  2YWQ A;  4DR1 E;  3ADI A;  2HC5 A;  5A6J A;  2V88 A;  5ADZ A;  2LCE A;  1T4L B;  4K0K E;  3EQ1 A;  2EOO A;  1IBM E;  3K6Q A;  1N32 E;  1J5E E;  4DR4 E;  4YY3 E;  3LML A;  4DR6 E;  2GHF A;  3HQ1 A;  2EQ0 A;  1YUI A;  1YFH A;  2DMI A;  1QU6 A;  2EMW A;  2F8B A;  5KL5 A;  2ZM6 E;  2UUC E;  1YZ9 A;  4WSG A;  2EPO A;  4LF5 E;  2YSP A;  1EH8 A;  2LMZ A;  3KWR A;  2UU9 E;  1J26 A;  2YTI A;  4R2A A;  3JTZ A;  5A6B A;  1WRJ A;  2VRD A;  2YTF A;  1A1L A;  5AE1 A;  1EH6 A;  3JAM C;  4M30 A;  4JI2 E;  2E72 A;  2M4I A;  2F4V E;  2EM4 A;  2EPN A;  2EPP A;  2RS6 A;  3UK3 C;  2K7I A;  4LFC E;  2YTQ A;  4WXC A;  3VK6 A;  4NXM E;  2EL4 A;  5IT9 C;  2YRH A;  4L8N A;  5CFF E;  4NXN E;  2EM0 A;  2YTD A;  3IWB A;  2DSY A;  2WZO A;  4JI7 E;  4JI0 E;  4ZYG A;  2R76 A;  1B69 A;  1STU A;  2DB2 A;  2EOS A;  2WCC 3;  4R2R A;  2EN3 A;  5AE3 A;  3P1X A;  4DUY E;  1GQE A;  2EQ3 A;  4M9V C;  4LFA E;  2FGG A;  1X6H A;  2EOY A;  2G7H A;  2JXP A;  2DRP A;  2EOE A;  2NA2 A;  5KL7 A;  4GEQ B;  4X66 E;  4GZN C;  1ZBT A;  4JI6 E;  4TUI A;  1O0W A;  4DV6 E;  4DR3 E;  3DJW A;  1N3G A;  3JU0 A;  2LV2 A;  4WX9 A;  4F6M A;  2MC6 A;  1UBD C;  3LLH A;  3H09 A;  5DNY A;  3HXL A;  3T1Y E;  2EZ6 A;  1IMU A;  1A1H A;  2V86 A;  4BCA A;  4FK5 C;  2RS7 A;  2ENA A;  2L92 A;  4RH8 A;  2YTJ A;  1ZR9 A;  3AV0 A;  2LUP B;  1SFE A;  2BB8 A;  1ZU1 A;  4WXD A;  1WHQ A;  2JPA A;  1JK2 A;  2HGH A;  4B3R E;  4R2P A;  4KHP E;  2A25 A;  1TF3 A;  5AAS A;  2RTX A;  1EKZ A;  1NEI A;  3BBG A;  2YTP A;  4KWY A;  4GKJ E;  1ZBQ A;  2YRM A;  2YU8 A;  1NCS A;  1X6F A;  1GTK A;  2K4V A;  2JR1 A;  1BB8 A;  3KZZ A;  4LTY A;  4JV5 E;  4DR5 E;  4LF9 E;  1XNQ E;  1IQO A;  2EN8 A;  2EMH A;  4F9B B;  2L2N A;  4DV0 E;  2EMZ A;  2JWO A;  5KL6 A;  2JYA A;  2V83 A;  4F54 A;  2V89 A;  1Z1B A;  4JI5 E;  4X65 E;  2B7V A;  2HJJ A;  2YTE A;  5AC4 A;  2EP3 A;  2EOJ A;  3F6H A;  3T1H E;  1T4O A;  1IQS A;  1EH7 A;  2EN7 A;  4JI3 E;  4Q28 A;  3BID A;  1I94 E;  2CSH A;  5TSE A;  4F9C B;  3EPH A;  4B3T E;  4WPY A;  2YTO A;  2MKD A;  4O24 A;  1HNZ E;  4BC9 A;  1PJS A;  2EPL X;  3OML A;  1G2D C;  4O5G A;  1MEY C;  1PJQ A;  4BMJ A;  2L6M A;  1X48 A;  2R1F A;  5LL6 R;  2HHH E;  2RSI A;  2IHR 1;  5F3W A;  2KOU A;  4P78 A;  3IWC A;  4X64 E;  4OX9 E;  4ZYE A;  4DV3 E;  1AAY A;  1IBL E;  2EN1 A;  5IV8 B;  4LU9 A;  1A1G A;  2UXD E;  2B7T A;  2WBT A;  2E5L E;  1A1I A;  5A6A A;  4R8O A;  1X49 A;  2RPC A;  2I9I A;  3C4B A;  1JK1 A;  2M9A A;  4NZV A;  2EN2 A;  3J7A G;  4J8Z A;  1TN9 A;  2EOH A;  2YZT A;  2RQL A;  3J81 C;  3TQM A;  4JI4 E;  4M2Z A;  4HTG A;  2E1M A;  2EMY A;  1X6E A;  3ZOQ B;  2EMX A;  2EPZ A;  3IWD A;  2ELZ A;  2EOZ A;  3MSW A;  1DQ3 A;  4DV2 E;  2ODR C;  3BGH A;  4R2C A;  2LO3 A;  2EN6 A;  2ENC A;  4R2E A;  2L2K B;  2ODR D;  2NAB A;  4O4K A;  4WSP A;  4DV4 E;  2L3C A;  2EOQ A;  2J7J A;  2N8X A;  4MLQ A;  2MKN A;  4WFT A;  5LMN E;  4I8O A;  4X8W A;  2LT7 A;  1P47 A;  3HPS A;  3C4T A;  2Q8U A;  1ZAA C;  5A6K A;  2EPK X;  1MGT A;  2LVH A;  2EPU A;  4DV5 E;  1T39 A;  3EPL A;  2MC5 A;  2EMB A;  4JI8 E;  2EM9 A;  1YSA C; 
#chains in the Genus database with same CATH homology
 3BBG A;  2BBG A;  1BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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