2BBGA

Ragweed pollen allergen from ambrosia trifida v, nmr, 30 structures
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
total genus 6
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 2bbgA00
2BBGA 1BBGA 3BBGA
chains in the Genus database with same CATH superfamily
1JK1A 5KL6A 4LF6E 4R2EA 3HPSA 4L8NA 2LTSA 2VF1A 4OX9E 3HQ1A 2JXPA 5A2QC 2K4VA 4DV1E 2V85A 4DR2E 2YTQA 3C6KA 2LRSA 4NXME 2UXCE 5A6BA 1N33E 1WHQA 3IWDA 2EPZA 3TQMA 4B3RE 5CFFE 4HTGA 2I9IA 3KZYA 2UXDE 1PJSA 2UU9E 1L4SA 2LBSB 1X5WA 1KJKA 3ECRA 1ZBTA 2CT1A 2WCC3 2EOQA 2YZTA 3MHHC 3HPZA 2EOHA 4BHCA 2E1MA 3EPHA 2EM4A 2EMXA 2EMWA 4JI0E 3J7Yp 2BB8A 1F2IG 4GEQB 4BC9A 2UXBE 4KWYA 2EOMA 2NUGA 2E72A 4X62E 1A1KA 4M2ZA 2EM3A 2EQ3A 2PRTA 2KHXA 4GKKE 5A6AA 4JI2E 2N8XA 2ODRC 4RHBB 4LF5E 2HGHA 2HC5A 3DF6A 3EPLA 1DQ3A 2LMZA 2FV4B 2EPUA 5T6JA 2EN1A 5DNYA 2V8QB 1YYOA 2EP3A 4F54A 2VQEE 2EPOA 2DMIA 5FLXC 4R8OA 1I94E 5TSEA 4M30A 2EQ0A 3EPJA 4HEIA 4DMIA 2EMCA 3THNA 2EWLA 4DV6E 1BB8A 2GPIA 1YYWA 2EPKX 3BIDA 1A1LA 1PJTA 2LE2A 4LFAE 4R2QA 4JI3E 2EPNA 1P47A 4NHRA 2R76A 4F9AB 1GZ6A 2EL4A 3ADIA 2EJ4A 4KHPE 2YTGA 3VYYA 3LMLA 1N3GA 2B7TA 4R2AA 2L8TA 2LUPB 2M9AA 3AV0A 3OTOE 2MDRA 2WZOA 2EM5A 3ADJA 4JI8E 4LFBE 5KL5A 4DR7E 3KWRA 2YTEA 2MKNA 4F9BB 3JTZA 1A1IA 2ENCA 2EMZA 2G7HA 2EPCA 4DV7E 2EL5A 3UK3C 2LCEA 2LTRA 4TUIA 5IWAE 2YTFA 2YTPA 4M9VC 4B3SE 1QNTA 4LU9A 1G2DC 1IQOA 2UUBE 4IS1C 2ELYA 2V83A 3OMLA 2JWOA 4X66E 1WHNA 1TF3A 4M0VA 2B3TB 2FTXB 1MGTA 5KL4A 4TUGA 4JI4E 2RPCA 1XNQE 4DUZE 1X6FA 4DUYE 2DSYA 2EOFA 1HNZE 4JV5E 1FKAE 1DGCA 4IJDA 1A1FA 1YUIA 2EN3A 4LF8E 4DV4E 5KL3A 5BR8E 2EL6A 5AE3A 4LF7E 5LLQA 2DGCA 2YTOA 4ZYHA 3T1YE 1EH7A 1XMOE 4WX9A 4O43A 1N36E 1HR0E 4L5NC 4X9JA 3FIGA 2V88A 2V87A 4RH8A 4F2JC 1JK2A 1YUJA 2YT4A 4DR4E 4DR6E 4DR1E 2YTDA 2EOYA 2JOBA 3JAMC 2EM7A 3ADGA 4BC7A 2V89A 2YRMA 4DV5E 2EM8A 1SFEA 2JOXA 3HXLA 1A1JA 3HTXA 4DKKA 2JY9A 2LUQA 2YWQA 3M99B 2J7JA 1TF6A 4Q28A 5AASA 2NUFA 1PDAA 2VQFE 4P78A 3VK6A 5A6JA 4ZYGA 5AC4A 2EMKA 4JI5E 2EZ6A 4K0KE 2L3CA 4DV3E 4J8ZA 1UHZA 2ELZA 1GTKA 2EOXA 2DLKA 2UUAE 2H36X 1A1GA 2ZM6E 2EM0A 4WPYA 2VE7C 2L6MA 3C4BA 1IBME 2DB2A 4R03A 2EQ1A 2EN7A 2EPAA 2NA2A 3C4TA 2YTIA 2EPPA 2ADRA 2GLIA 4LFCE 5KL2A 1X3CA 3RMPA 2HHHE 1NCSA 2EN4A 2F4VE 2EMHA 5AE2A 4JI1E 2EMYA 2M1SA 2CSHA 4WFTA 4BS9A 4BHBA 4GKJE 2LJHA 4WSPA 2YRHA 3VHTB 1IBKE 2N3GA 2JP9A 5ADZA 3THOB 4WXCA 5KL7A 1T38A 5IXMB 1Z1BA 1YYKA 1WJPA 2ENAA 3IWCA 1QU6A 1T4OA 3BF2A 1X6EA 2B7VA 1A1HA 1TN9A 5IV8B 2YPNA 2JPAA 2WBTA 4B3ME 1KYQA 3T1HE 2E5LE 1IMUA 1X47A 2F8BA 2K7IA 4DV0E 4ZYDA 1J5EE 1GQEA 4BCAA 4NZVA 2EN6A 2M7QA 3DJWA 1RC7A 3J80C 1B69A 3QG5C 4YY3E 4WSGA 2L2MA 1YFHA 2EPXA 2LO3A 1EH6A 2RQLA 1N34E 3KZZA 5A6KA 5LL6R 1X48A 2DIXA 5A69A 2YU8A 2EN8A 2MC6A 2HJJA 4P7DA 4DR3E 4R2CA 4X8WA 4X64E 2YSPA 4F6MA 3J7AG 4JI7E 1LLMC 2YRKA 2MC5A 1T39A 3ZOQB 1X6HA 4R2SA 4NXNE 1ZBQA 1YPNA 2EOZA 3BBGA 1J26A 1RQ0A 2L3JA 2GHFA 2JVAA 4DV2E 3P1XA 2JYAA 1HNXE 4GZNC 1UN6B 1WRJA 1PKPA 2EOJA 4R2PA 2WBSA 3J81C 1XNRE 2LV2A 4JI6E 2EN2A 2WBUA 3MHSC 1NEIA 4ZYEA 2EMIA 1X49A 1FJGE 4FK5C 2EM6A 3L00A 1EKZA 1O0WA 4F9CB 2ENHA 4JYAE 2Q8UA 2RSMA 3H09A 1RMDA 2EMAA 4R2RA 2YU5A 2MDGA 2UUCE 4WYQB 2YTNA 4O24A 1UILA 1WXRA 1ZR9A 4YHHE 2KOUA 2ODRD 2EMLA 2EMGA 2DRPA 3BGHA 1IQSA 2RS6A 2V86A 4Q35B 4LTYA 3ADLA 2EMBA 4O4KA 2N3HA 2KONA 2EORA 5AE1A 2LVHA 3EQ1A 2EM9A 2D9HA 1BBGA 2EM2A 3F6HA 4F6NA 3AUZA 2L33A 1MEYC 4DR5E 2EMFA 2EOSA 1XMQE 2FGGA 1YZ9A 4KZSA 4BMJA 2LT7A 2CPNA 2VRDA 1T4NA 2EE8A 4B3TE 1PJQA 2L92A 2DMYA 1ZAAC 5IT9C 1UBDC 5F3WA 1IBLE 1DI2A 2NUEA 4BBYA 1STUA 5LMNE 1G2FC 1T4LB 2DLQA 4O5GA 2MKDA 2JR1A 2NABA 3LLHA 2EOEA 2YTJA 2EPRA 3IWBA 1N32E 3VYXA 4MLQA 5LMUE 3MSWA 2L2KB 2A25A 2RTXA 4LF4E 4OOGC 3EPKA 1ZU1A 3JU0A 1YSAC 3K6QA 2EOIA 2RSIA 2EPMX 4AQYE 2EPLX 2B9DA 2L2NA 2YSOA 2BBGA 4MLVA 4N4RB 5AC5A 2CTDA 4LF9E 1EH8A 3C6MA 2R1FA 4X65E 2I13A 4WXDA 4I8OA 2LJUA 1AH5A 2M4IA 1BBOA 1HNWE 2EOOA 1SR9A 2IHR1 5A6BD 3F6GA 1AAYA 4R2DA 2RS7A
chains in the Genus database with same CATH topology
2BBGA 1BBGA 3BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BBG A;  1BBG A;  3BBG A; 
#chains in the Genus database with same CATH topology
 1JK1 A;  5KL6 A;  4LF6 E;  4R2E A;  3HPS A;  4L8N A;  2LTS A;  2VF1 A;  4OX9 E;  3HQ1 A;  2JXP A;  5A2Q C;  2K4V A;  4DV1 E;  2V85 A;  4DR2 E;  2YTQ A;  3C6K A;  2LRS A;  4NXM E;  2UXC E;  5A6B A;  1N33 E;  1WHQ A;  3IWD A;  2EPZ A;  3TQM A;  4B3R E;  5CFF E;  4HTG A;  2I9I A;  3KZY A;  2UXD E;  1PJS A;  2UU9 E;  1L4S A;  2LBS B;  1X5W A;  1KJK A;  3ECR A;  1ZBT A;  2CT1 A;  2WCC 3;  2EOQ A;  2YZT A;  3MHH C;  3HPZ A;  2EOH A;  4BHC A;  2E1M A;  3EPH A;  2EM4 A;  2EMX A;  2EMW A;  4JI0 E;  3J7Y p;  2BB8 A;  1F2I G;  4GEQ B;  4BC9 A;  2UXB E;  4KWY A;  2EOM A;  2NUG A;  2E72 A;  4X62 E;  1A1K A;  4M2Z A;  2EM3 A;  2EQ3 A;  2PRT A;  2KHX A;  4GKK E;  5A6A A;  4JI2 E;  2N8X A;  2ODR C;  4RHB B;  4LF5 E;  2HGH A;  2HC5 A;  3DF6 A;  3EPL A;  1DQ3 A;  2LMZ A;  2FV4 B;  2EPU A;  5T6J A;  2EN1 A;  5DNY A;  2V8Q B;  1YYO A;  2EP3 A;  4F54 A;  2VQE E;  2EPO A;  2DMI A;  5FLX C;  4R8O A;  1I94 E;  5TSE A;  4M30 A;  2EQ0 A;  3EPJ A;  4HEI A;  4DMI A;  2EMC A;  3THN A;  2EWL A;  4DV6 E;  1BB8 A;  2GPI A;  1YYW A;  2EPK X;  3BID A;  1A1L A;  1PJT A;  2LE2 A;  4LFA E;  4R2Q A;  4JI3 E;  2EPN A;  1P47 A;  4NHR A;  2R76 A;  4F9A B;  1GZ6 A;  2EL4 A;  3ADI A;  2EJ4 A;  4KHP E;  2YTG A;  3VYY A;  3LML A;  1N3G A;  2B7T A;  4R2A A;  2L8T A;  2LUP B;  2M9A A;  3AV0 A;  3OTO E;  2MDR A;  2WZO A;  2EM5 A;  3ADJ A;  4JI8 E;  4LFB E;  5KL5 A;  4DR7 E;  3KWR A;  2YTE A;  2MKN A;  4F9B B;  3JTZ A;  1A1I A;  2ENC A;  2EMZ A;  2G7H A;  2EPC A;  4DV7 E;  2EL5 A;  3UK3 C;  2LCE A;  2LTR A;  4TUI A;  5IWA E;  2YTF A;  2YTP A;  4M9V C;  4B3S E;  1QNT A;  4LU9 A;  1G2D C;  1IQO A;  2UUB E;  4IS1 C;  2ELY A;  2V83 A;  3OML A;  2JWO A;  4X66 E;  1WHN A;  1TF3 A;  4M0V A;  2B3T B;  2FTX B;  1MGT A;  5KL4 A;  4TUG A;  4JI4 E;  2RPC A;  1XNQ E;  4DUZ E;  1X6F A;  4DUY E;  2DSY A;  2EOF A;  1HNZ E;  4JV5 E;  1FKA E;  1DGC A;  4IJD A;  1A1F A;  1YUI A;  2EN3 A;  4LF8 E;  4DV4 E;  5KL3 A;  5BR8 E;  2EL6 A;  5AE3 A;  4LF7 E;  5LLQ A;  2DGC A;  2YTO A;  4ZYH A;  3T1Y E;  1EH7 A;  1XMO E;  4WX9 A;  4O43 A;  1N36 E;  1HR0 E;  4L5N C;  4X9J A;  3FIG A;  2V88 A;  2V87 A;  4RH8 A;  4F2J C;  1JK2 A;  1YUJ A;  2YT4 A;  4DR4 E;  4DR6 E;  4DR1 E;  2YTD A;  2EOY A;  2JOB A;  3JAM C;  2EM7 A;  3ADG A;  4BC7 A;  2V89 A;  2YRM A;  4DV5 E;  2EM8 A;  1SFE A;  2JOX A;  3HXL A;  1A1J A;  3HTX A;  4DKK A;  2JY9 A;  2LUQ A;  2YWQ A;  3M99 B;  2J7J A;  1TF6 A;  4Q28 A;  5AAS A;  2NUF A;  1PDA A;  2VQF E;  4P78 A;  3VK6 A;  5A6J A;  4ZYG A;  5AC4 A;  2EMK A;  4JI5 E;  2EZ6 A;  4K0K E;  2L3C A;  4DV3 E;  4J8Z A;  1UHZ A;  2ELZ A;  1GTK A;  2EOX A;  2DLK A;  2UUA E;  2H36 X;  1A1G A;  2ZM6 E;  2EM0 A;  4WPY A;  2VE7 C;  2L6M A;  3C4B A;  1IBM E;  2DB2 A;  4R03 A;  2EQ1 A;  2EN7 A;  2EPA A;  2NA2 A;  3C4T A;  2YTI A;  2EPP A;  2ADR A;  2GLI A;  4LFC E;  5KL2 A;  1X3C A;  3RMP A;  2HHH E;  1NCS A;  2EN4 A;  2F4V E;  2EMH A;  5AE2 A;  4JI1 E;  2EMY A;  2M1S A;  2CSH A;  4WFT A;  4BS9 A;  4BHB A;  4GKJ E;  2LJH A;  4WSP A;  2YRH A;  3VHT B;  1IBK E;  2N3G A;  2JP9 A;  5ADZ A;  3THO B;  4WXC A;  5KL7 A;  1T38 A;  5IXM B;  1Z1B A;  1YYK A;  1WJP A;  2ENA A;  3IWC A;  1QU6 A;  1T4O A;  3BF2 A;  1X6E A;  2B7V A;  1A1H A;  1TN9 A;  5IV8 B;  2YPN A;  2JPA A;  2WBT A;  4B3M E;  1KYQ A;  3T1H E;  2E5L E;  1IMU A;  1X47 A;  2F8B A;  2K7I A;  4DV0 E;  4ZYD A;  1J5E E;  1GQE A;  4BCA A;  4NZV A;  2EN6 A;  2M7Q A;  3DJW A;  1RC7 A;  3J80 C;  1B69 A;  3QG5 C;  4YY3 E;  4WSG A;  2L2M A;  1YFH A;  2EPX A;  2LO3 A;  1EH6 A;  2RQL A;  1N34 E;  3KZZ A;  5A6K A;  5LL6 R;  1X48 A;  2DIX A;  5A69 A;  2YU8 A;  2EN8 A;  2MC6 A;  2HJJ A;  4P7D A;  4DR3 E;  4R2C A;  4X8W A;  4X64 E;  2YSP A;  4F6M A;  3J7A G;  4JI7 E;  1LLM C;  2YRK A;  2MC5 A;  1T39 A;  3ZOQ B;  1X6H A;  4R2S A;  4NXN E;  1ZBQ A;  1YPN A;  2EOZ A;  3BBG A;  1J26 A;  1RQ0 A;  2L3J A;  2GHF A;  2JVA A;  4DV2 E;  3P1X A;  2JYA A;  1HNX E;  4GZN C;  1UN6 B;  1WRJ A;  1PKP A;  2EOJ A;  4R2P A;  2WBS A;  3J81 C;  1XNR E;  2LV2 A;  4JI6 E;  2EN2 A;  2WBU A;  3MHS C;  1NEI A;  4ZYE A;  2EMI A;  1X49 A;  1FJG E;  4FK5 C;  2EM6 A;  3L00 A;  1EKZ A;  1O0W A;  4F9C B;  2ENH A;  4JYA E;  2Q8U A;  2RSM A;  3H09 A;  1RMD A;  2EMA A;  4R2R A;  2YU5 A;  2MDG A;  2UUC E;  4WYQ B;  2YTN A;  4O24 A;  1UIL A;  1WXR A;  1ZR9 A;  4YHH E;  2KOU A;  2ODR D;  2EML A;  2EMG A;  2DRP A;  3BGH A;  1IQS A;  2RS6 A;  2V86 A;  4Q35 B;  4LTY A;  3ADL A;  2EMB A;  4O4K A;  2N3H A;  2KON A;  2EOR A;  5AE1 A;  2LVH A;  3EQ1 A;  2EM9 A;  2D9H A;  1BBG A;  2EM2 A;  3F6H A;  4F6N A;  3AUZ A;  2L33 A;  1MEY C;  4DR5 E;  2EMF A;  2EOS A;  1XMQ E;  2FGG A;  1YZ9 A;  4KZS A;  4BMJ A;  2LT7 A;  2CPN A;  2VRD A;  1T4N A;  2EE8 A;  4B3T E;  1PJQ A;  2L92 A;  2DMY A;  1ZAA C;  5IT9 C;  1UBD C;  5F3W A;  1IBL E;  1DI2 A;  2NUE A;  4BBY A;  1STU A;  5LMN E;  1G2F C;  1T4L B;  2DLQ A;  4O5G A;  2MKD A;  2JR1 A;  2NAB A;  3LLH A;  2EOE A;  2YTJ A;  2EPR A;  3IWB A;  1N32 E;  3VYX A;  4MLQ A;  5LMU E;  3MSW A;  2L2K B;  2A25 A;  2RTX A;  4LF4 E;  4OOG C;  3EPK A;  1ZU1 A;  3JU0 A;  1YSA C;  3K6Q A;  2EOI A;  2RSI A;  2EPM X;  4AQY E;  2EPL X;  2B9D A;  2L2N A;  2YSO A;  2BBG A;  4MLV A;  4N4R B;  5AC5 A;  2CTD A;  4LF9 E;  1EH8 A;  3C6M A;  2R1F A;  4X65 E;  2I13 A;  4WXD A;  4I8O A;  2LJU A;  1AH5 A;  2M4I A;  1BBO A;  1HNW E;  2EOO A;  1SR9 A;  2IHR 1;  5A6B D;  3F6G A;  1AAY A;  4R2D A;  2RS7 A; 
#chains in the Genus database with same CATH homology
 2BBG A;  1BBG A;  3BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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