1IQSA

Minimized average structure of mth1880 from methanobacterium thermoautotrophicum
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
88
structure length
88
Chain Sequence
LFIATLKGIFTLKDLPEEFRPFVDYKAGLEKKKLSDDDEIAIISIKGTQSNHVLFLSSYNSVDEIRKELEEAGAKINHTTLKILEGHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
source organism Methanothermobacter thermautotrophicus
publication title Solution structure of a novel calcium binding protein, MTH1880, from Methanobacterium thermoautotrophicum.
pubmed doi rcsb
molecule keywords MTH1880
total genus 13
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2001-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05370 DUF749 Domain of unknown function (DUF749)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.120 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Hypothetical protein MTH1880 1iqsA00
1IQSA 1IQOA
chains in the Genus database with same CATH superfamily
2EOYA 4JV5E 1A1FA 2VRDA 1T4LB 4AQYE 4BC9A 4R2SA 2EMHA 2EMFA 3C6KA 3HPZA 2EMYA 2V85A 2MDGA 4DR7E 3MSWA 2FTXB 2I9IA 1YYKA 2B3TB 4JI0E 5LLQA 1JK1A 1YSAC 2BBGA 2CPNA 1YZ9A 2H36X 2JOXA 2RTXA 2EM8A 1T4OA 5F3WA 2EOJA 1N32E 2YTGA 3T1YE 2M1SA 1YUJA 3F6GA 5A6AA 4KWYA 1YUIA 2EM6A 4LF5E 3ADLA 2VQEE 2EJ4A 4R03A 1WRJA 3QG5C 2V86A 3EPKA 4JI4E 2EPXA 4MLQA 4R2RA 3VYYA 4LF6E 3T1HE 1QU6A 2LO3A 2WBUA 2ELYA 2RQLA 2EE8A 2UUBE 2A25A 2EMKA 2EQ0A 2EPZA 3ADJA 1IMUA 2FV4B 2EMAA 4ZYHA 2JWOA 2EM5A 1PDAA 1G2FC 2EM3A 2K4VA 1N34E 2YTOA 3FIGA 2L3CA 4MLVA 4KHPE 2PRTA 2J7JA 4DV4E 2EOZA 4DV5E 2M4IA 4LFAE 1GZ6A 2LT7A 2YRKA 2ENHA 5IXMB 5IV8B 1UN6B 2EOIA 5KL3A 1KYQA 2CT1A 1AH5A 1MGTA 1SR9A 4R2DA 2HC5A 2UU9E 4X8WA 2KONA 3THNA 2YT4A 2EM7A 4X9JA 2JR1A 4LTYA 3BGHA 5KL4A 1BBOA 2K7IA 5LMUE 1O0WA 4Q28A 2RSMA 2EOSA 2R1FA 2YTEA 2EQ3A 2MC5A 4R8OA 2EMGA 1RC7A 1WHQA 2EQ1A 2RS6A 3HTXA 2NA2A 1L4SA 1IBKE 2EWLA 4F2JC 1LLMC 4Q35B 2EM9A 5AC5A 2WBSA 2EN2A 2EOEA 4DUYE 4WXCA 4M0VA 2EORA 4LF4E 2JXPA 3H09A 2B9DA 3MHHC 4JI1E 4J8ZA 4R2EA 1UILA 5A6KA 1XNRE 2YRHA 4ZYGA 2LUPB 3EPHA 2YSPA 2RS7A 5BR8E 4DV3E 2EOOA 3UK3C 4BS9A 3HQ1A 3DF6A 4NXME 1TF3A 4DR2E 1PJQA 4P78A 4WPYA 2F8BA 2YTFA 4JI6E 2DGCA 2E5LE 1EKZA 2ENAA 2EL5A 2V87A 1EH7A 2EOMA 2VQFE 5A69A 3VHTB 1MEYC 2EN7A 4X62E 2LE2A 4JI5E 2N3GA 3J80C 3AUZA 1T4NA 2LV2A 1YYWA 1X49A 2HGHA 2MC6A 5AE3A 2EN1A 3HPSA 2UUAE 2YWQA 3TQMA 5KL7A 2DLQA 5A2QC 2B7VA 5AE2A 2ADRA 2N8XA 3C6MA 4NXNE 1FJGE 2EN4A 2LBSB 4DV0E 2EPPA 4N4RB 2L3JA 3K6QA 2UUCE 4DMIA 4DV1E 2EPNA 1ZAAC 2L8TA 5KL6A 4IS1C 4WFTA 1J5EE 2MKNA 3LLHA 4WXDA 4LF8E 2WBTA 2E1MA 2L6MA 1HR0E 2L2NA 3EPLA 1IQOA 1A1LA 3JTZA 1RQ0A 3OTOE 3DJWA 3AV0A 1X6HA 4DR5E 4DV2E 2I13A 5FLXC 2UXDE 4O43A 2EOXA 3BIDA 4JI8E 2EMZA 4GEQB 4RH8A 1ZBQA 1RMDA 2LJUA 2YTQA 2YPNA 3VK6A 4GKKE 1WHNA 1J26A 4M9VC 1A1GA 4BBYA 2EPCA 1G2DC 4IJDA 1PJTA 4M2ZA 3ZOQB 2WZOA 1T38A 1A1IA 4LF9E 1QNTA 4YHHE 4BHCA 2LCEA 2DLKA 4F6NA 4R2AA 4F9BB 3J81C 1I94E 4YY3E 3KZZA 1PKPA 5CFFE 2GLIA 4DV6E 3MHSC 1KJKA 3JAMC 2FGGA 4R2QA 2IHR1 5AASA 2R76A 5A6BA 4JI3E 2Q8UA 3LMLA 3KWRA 5TSEA 1YFHA 2DSYA 2EL4A 2YRMA 1JK2A 2EM2A 3THOB 4O24A 2EMWA 2NABA 3VYXA 1X47A 2B7TA 2EMCA 4FK5C 3IWBA 2E72A 2EPUA 4F6MA 4GZNC 2EM0A 4JI7E 3JU0A 2M7QA 2EOQA 1HNZE 1A1HA 2DB2A 2M9AA 3HXLA 5IWAE 3IWCA 4ZYDA 2NUEA 2UXCE 3ADIA 3F6HA 3J7Yp 2EN8A 2UXBE 4DV7E 4DR3E 1FKAE 2YU8A 1X6EA 4NHRA 2L2KB 4BMJA 1BB8A 2DRPA 3KZYA 4RHBB 4DUZE 1WXRA 1SFEA 2MKDA 2GPIA 2NUGA 4WSGA 4X64E 1ZR9A 5A6JA 1TN9A 4DR6E 2KHXA 5AE1A 2EM4A 2NUFA 4B3RE 4R2PA 1ZBTA 2DMYA 2YSOA 1A1JA 3RMPA 3BBGA 2EPKX 1GTKA 4O4KA 4B3ME 1XMOE 1N36E 1N33E 2V88A 2JP9A 2HHHE 2CTDA 2EMBA 4ZYEA 4L8NA 4DR1E 1X6FA 5T6JA 3IWDA 2LJHA 1DGCA 2LUQA 1UHZA 3L00A 3M99B 2EMLA 2JVAA 1N3GA 2JPAA 2EPRA 2ZM6E 1DI2A 4DKKA 5LMNE 2L33A 4F9AB 3C4BA 4L5NC 2YZTA 4KZSA 2RPCA 4BHBA 1STUA 2D9HA 4LF7E 1NCSA 1YPNA 4LFCE 2YTNA 1DQ3A 4LU9A 1IBLE 2DMIA 4X66E 1P47A 1EH6A 1YYOA 4F9CB 2DIXA 2VE7C 2YTJA 1GQEA 2KOUA 4TUGA 2V89A 2YTIA 1A1KA 3P1XA 1XNQE 3ECRA 2EOFA 1XMQE 2GHFA 2LTSA 3ADGA 1AAYA 2RSIA 1UBDC 4GKJE 3BF2A 3J7AG 2EPOA 1X48A 4F54A 2LTRA 1X3CA 2VF1A 2F4VE 1Z1BA 4OOGC 2ENCA 4M30A 2EMXA 1WJPA 5DNYA 2V8QB 1NEIA 4I8OA 4K0KE 4JYAE 1BBGA 2YU5A 5ADZA 2BB8A 2EN3A 2LVHA 4WX9A 2EN6A 4X65E 4BC7A 2L92A 4LFBE 2JY9A 1PJSA 1X5WA 1B69A 2JYAA 4B3TE 4WSPA 2JOBA 4BCAA 2CSHA 2EMIA 2L2MA 5KL5A 4DR4E 2MDRA 2EOHA 5A6BD 4HTGA 2HJJA 1IQSA 2EL6A 2LRSA 2ODRD 3C4TA 4HEIA 1IBME 2EPAA 2ELZA 2N3HA 3EQ1A 2YTDA 2EP3A 4O5GA 4R2CA 5AC4A 2G7HA 3EPJA 4JI2E 4OX9E 1HNWE 2EZ6A 4WYQB 2WCC3 2EPLX 2V83A 4B3SE 5LL6R 1TF6A 2EPMX 2ODRC 4NZVA 2LMZA 4P7DA 5IT9C 4TUIA 1T39A 3OMLA 1F2IG 1ZU1A 5KL2A 1EH8A 1HNXE 2YTPA
chains in the Genus database with same CATH topology
1IQSA 1IQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IQS A;  1IQO A; 
#chains in the Genus database with same CATH topology
 2EOY A;  4JV5 E;  1A1F A;  2VRD A;  1T4L B;  4AQY E;  4BC9 A;  4R2S A;  2EMH A;  2EMF A;  3C6K A;  3HPZ A;  2EMY A;  2V85 A;  2MDG A;  4DR7 E;  3MSW A;  2FTX B;  2I9I A;  1YYK A;  2B3T B;  4JI0 E;  5LLQ A;  1JK1 A;  1YSA C;  2BBG A;  2CPN A;  1YZ9 A;  2H36 X;  2JOX A;  2RTX A;  2EM8 A;  1T4O A;  5F3W A;  2EOJ A;  1N32 E;  2YTG A;  3T1Y E;  2M1S A;  1YUJ A;  3F6G A;  5A6A A;  4KWY A;  1YUI A;  2EM6 A;  4LF5 E;  3ADL A;  2VQE E;  2EJ4 A;  4R03 A;  1WRJ A;  3QG5 C;  2V86 A;  3EPK A;  4JI4 E;  2EPX A;  4MLQ A;  4R2R A;  3VYY A;  4LF6 E;  3T1H E;  1QU6 A;  2LO3 A;  2WBU A;  2ELY A;  2RQL A;  2EE8 A;  2UUB E;  2A25 A;  2EMK A;  2EQ0 A;  2EPZ A;  3ADJ A;  1IMU A;  2FV4 B;  2EMA A;  4ZYH A;  2JWO A;  2EM5 A;  1PDA A;  1G2F C;  2EM3 A;  2K4V A;  1N34 E;  2YTO A;  3FIG A;  2L3C A;  4MLV A;  4KHP E;  2PRT A;  2J7J A;  4DV4 E;  2EOZ A;  4DV5 E;  2M4I A;  4LFA E;  1GZ6 A;  2LT7 A;  2YRK A;  2ENH A;  5IXM B;  5IV8 B;  1UN6 B;  2EOI A;  5KL3 A;  1KYQ A;  2CT1 A;  1AH5 A;  1MGT A;  1SR9 A;  4R2D A;  2HC5 A;  2UU9 E;  4X8W A;  2KON A;  3THN A;  2YT4 A;  2EM7 A;  4X9J A;  2JR1 A;  4LTY A;  3BGH A;  5KL4 A;  1BBO A;  2K7I A;  5LMU E;  1O0W A;  4Q28 A;  2RSM A;  2EOS A;  2R1F A;  2YTE A;  2EQ3 A;  2MC5 A;  4R8O A;  2EMG A;  1RC7 A;  1WHQ A;  2EQ1 A;  2RS6 A;  3HTX A;  2NA2 A;  1L4S A;  1IBK E;  2EWL A;  4F2J C;  1LLM C;  4Q35 B;  2EM9 A;  5AC5 A;  2WBS A;  2EN2 A;  2EOE A;  4DUY E;  4WXC A;  4M0V A;  2EOR A;  4LF4 E;  2JXP A;  3H09 A;  2B9D A;  3MHH C;  4JI1 E;  4J8Z A;  4R2E A;  1UIL A;  5A6K A;  1XNR E;  2YRH A;  4ZYG A;  2LUP B;  3EPH A;  2YSP A;  2RS7 A;  5BR8 E;  4DV3 E;  2EOO A;  3UK3 C;  4BS9 A;  3HQ1 A;  3DF6 A;  4NXM E;  1TF3 A;  4DR2 E;  1PJQ A;  4P78 A;  4WPY A;  2F8B A;  2YTF A;  4JI6 E;  2DGC A;  2E5L E;  1EKZ A;  2ENA A;  2EL5 A;  2V87 A;  1EH7 A;  2EOM A;  2VQF E;  5A69 A;  3VHT B;  1MEY C;  2EN7 A;  4X62 E;  2LE2 A;  4JI5 E;  2N3G A;  3J80 C;  3AUZ A;  1T4N A;  2LV2 A;  1YYW A;  1X49 A;  2HGH A;  2MC6 A;  5AE3 A;  2EN1 A;  3HPS A;  2UUA E;  2YWQ A;  3TQM A;  5KL7 A;  2DLQ A;  5A2Q C;  2B7V A;  5AE2 A;  2ADR A;  2N8X A;  3C6M A;  4NXN E;  1FJG E;  2EN4 A;  2LBS B;  4DV0 E;  2EPP A;  4N4R B;  2L3J A;  3K6Q A;  2UUC E;  4DMI A;  4DV1 E;  2EPN A;  1ZAA C;  2L8T A;  5KL6 A;  4IS1 C;  4WFT A;  1J5E E;  2MKN A;  3LLH A;  4WXD A;  4LF8 E;  2WBT A;  2E1M A;  2L6M A;  1HR0 E;  2L2N A;  3EPL A;  1IQO A;  1A1L A;  3JTZ A;  1RQ0 A;  3OTO E;  3DJW A;  3AV0 A;  1X6H A;  4DR5 E;  4DV2 E;  2I13 A;  5FLX C;  2UXD E;  4O43 A;  2EOX A;  3BID A;  4JI8 E;  2EMZ A;  4GEQ B;  4RH8 A;  1ZBQ A;  1RMD A;  2LJU A;  2YTQ A;  2YPN A;  3VK6 A;  4GKK E;  1WHN A;  1J26 A;  4M9V C;  1A1G A;  4BBY A;  2EPC A;  1G2D C;  4IJD A;  1PJT A;  4M2Z A;  3ZOQ B;  2WZO A;  1T38 A;  1A1I A;  4LF9 E;  1QNT A;  4YHH E;  4BHC A;  2LCE A;  2DLK A;  4F6N A;  4R2A A;  4F9B B;  3J81 C;  1I94 E;  4YY3 E;  3KZZ A;  1PKP A;  5CFF E;  2GLI A;  4DV6 E;  3MHS C;  1KJK A;  3JAM C;  2FGG A;  4R2Q A;  2IHR 1;  5AAS A;  2R76 A;  5A6B A;  4JI3 E;  2Q8U A;  3LML A;  3KWR A;  5TSE A;  1YFH A;  2DSY A;  2EL4 A;  2YRM A;  1JK2 A;  2EM2 A;  3THO B;  4O24 A;  2EMW A;  2NAB A;  3VYX A;  1X47 A;  2B7T A;  2EMC A;  4FK5 C;  3IWB A;  2E72 A;  2EPU A;  4F6M A;  4GZN C;  2EM0 A;  4JI7 E;  3JU0 A;  2M7Q A;  2EOQ A;  1HNZ E;  1A1H A;  2DB2 A;  2M9A A;  3HXL A;  5IWA E;  3IWC A;  4ZYD A;  2NUE A;  2UXC E;  3ADI A;  3F6H A;  3J7Y p;  2EN8 A;  2UXB E;  4DV7 E;  4DR3 E;  1FKA E;  2YU8 A;  1X6E A;  4NHR A;  2L2K B;  4BMJ A;  1BB8 A;  2DRP A;  3KZY A;  4RHB B;  4DUZ E;  1WXR A;  1SFE A;  2MKD A;  2GPI A;  2NUG A;  4WSG A;  4X64 E;  1ZR9 A;  5A6J A;  1TN9 A;  4DR6 E;  2KHX A;  5AE1 A;  2EM4 A;  2NUF A;  4B3R E;  4R2P A;  1ZBT A;  2DMY A;  2YSO A;  1A1J A;  3RMP A;  3BBG A;  2EPK X;  1GTK A;  4O4K A;  4B3M E;  1XMO E;  1N36 E;  1N33 E;  2V88 A;  2JP9 A;  2HHH E;  2CTD A;  2EMB A;  4ZYE A;  4L8N A;  4DR1 E;  1X6F A;  5T6J A;  3IWD A;  2LJH A;  1DGC A;  2LUQ A;  1UHZ A;  3L00 A;  3M99 B;  2EML A;  2JVA A;  1N3G A;  2JPA A;  2EPR A;  2ZM6 E;  1DI2 A;  4DKK A;  5LMN E;  2L33 A;  4F9A B;  3C4B A;  4L5N C;  2YZT A;  4KZS A;  2RPC A;  4BHB A;  1STU A;  2D9H A;  4LF7 E;  1NCS A;  1YPN A;  4LFC E;  2YTN A;  1DQ3 A;  4LU9 A;  1IBL E;  2DMI A;  4X66 E;  1P47 A;  1EH6 A;  1YYO A;  4F9C B;  2DIX A;  2VE7 C;  2YTJ A;  1GQE A;  2KOU A;  4TUG A;  2V89 A;  2YTI A;  1A1K A;  3P1X A;  1XNQ E;  3ECR A;  2EOF A;  1XMQ E;  2GHF A;  2LTS A;  3ADG A;  1AAY A;  2RSI A;  1UBD C;  4GKJ E;  3BF2 A;  3J7A G;  2EPO A;  1X48 A;  4F54 A;  2LTR A;  1X3C A;  2VF1 A;  2F4V E;  1Z1B A;  4OOG C;  2ENC A;  4M30 A;  2EMX A;  1WJP A;  5DNY A;  2V8Q B;  1NEI A;  4I8O A;  4K0K E;  4JYA E;  1BBG A;  2YU5 A;  5ADZ A;  2BB8 A;  2EN3 A;  2LVH A;  4WX9 A;  2EN6 A;  4X65 E;  4BC7 A;  2L92 A;  4LFB E;  2JY9 A;  1PJS A;  1X5W A;  1B69 A;  2JYA A;  4B3T E;  4WSP A;  2JOB A;  4BCA A;  2CSH A;  2EMI A;  2L2M A;  5KL5 A;  4DR4 E;  2MDR A;  2EOH A;  5A6B D;  4HTG A;  2HJJ A;  1IQS A;  2EL6 A;  2LRS A;  2ODR D;  3C4T A;  4HEI A;  1IBM E;  2EPA A;  2ELZ A;  2N3H A;  3EQ1 A;  2YTD A;  2EP3 A;  4O5G A;  4R2C A;  5AC4 A;  2G7H A;  3EPJ A;  4JI2 E;  4OX9 E;  1HNW E;  2EZ6 A;  4WYQ B;  2WCC 3;  2EPL X;  2V83 A;  4B3S E;  5LL6 R;  1TF6 A;  2EPM X;  2ODR C;  4NZV A;  2LMZ A;  4P7D A;  5IT9 C;  4TUI A;  1T39 A;  3OML A;  1F2I G;  1ZU1 A;  5KL2 A;  1EH8 A;  1HNX E;  2YTP A; 
#chains in the Genus database with same CATH homology
 1IQS A;  1IQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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