1NEIA

Solution nmr structure of protein yoag from escherichia coli. ontario centre for structural proteomics target ec0264_1_60; northeast structural genomics consortium target et94.
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein yoaG
publication title Solution structure of hypothetical protein dimer encoded by the Yoag gene from Escherichia coli
rcsb
source organism Escherichia coli
total genus 9
structure length 60
sequence length 60
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08956 DUF1869 Domain of unknown function (DUF1869)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.220 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain YoaG 1neiA00
1NEIA
chains in the Genus database with same CATH superfamily
3TQMA 1PJTA 3AV0A 1WXRA 2EMCA 2ODRD 2BB8A 4F9AB 5DNYA 1NEIA 1P47A 4DV3E 1Z1BA 4WX9A 5KL3A 4LF4E 1X6EA 3FIGA 4DV5E 2DB2A 3ADIA 1FJGE 1X6HA 2PRTA 1IBKE 2I9IA 4LF8E 4O24A 2N3HA 2MKNA 4NHRA 2BBGA 5A6AA 1STUA 1A1FA 1ZAAC 2EN2A 2ENHA 2YTPA 2EMFA 2YTDA 3K6QA 2EM8A 2B3TB 2EQ0A 2HJJA 5A69A 2EOQA 4WPYA 1JK1A 4R03A 2EM2A 2EPCA 3VYXA 2FGGA 2LJHA 1PJSA 4R8OA 2EMHA 1UBDC 2EOEA 2UUAE 2YTOA 4ZYDA 4DKKA 2KOUA 2EMIA 2M9AA 5LMNE 2EMYA 2JVAA 3OMLA 1O0WA 2EMGA 1MEYC 3C4TA 1BB8A 2ENAA 1YYOA 3ECRA 2YTIA 2MC5A 2YTGA 2L33A 1X6FA 2F4VE 2M4IA 2EOMA 4BHCA 4KWYA 3F6HA 5AC4A 1G2FC 1FKAE 2EOOA 4BCAA 4JI8E 4KZSA 2YU5A 2EOYA 2LTSA 4JI0E 4LF7E 1GQEA 4X64E 2EM6A 4DV0E 2YTNA 1SR9A 2YSOA 3F6GA 1A1GA 3VK6A 3JAMC 4HTGA 4ZYGA 2DLKA 4N4RB 2LUQA 2WZOA 2FTXB 1X3CA 1BBOA 1IQOA 2LRSA 2VRDA 2RSMA 1IBME 2EQ3A 2YPNA 1NCSA 2JOXA 4YY3E 1X47A 1A1JA 2M1SA 3T1HE 2L2KB 2LVHA 3HXLA 2B9DA 2J7JA 2YTEA 1LLMC 5KL2A 3L00A 2V8QB 1ZBTA 4DV2E 2RPCA 2GHFA 4B3ME 2N8XA 4RH8A 5KL5A 1YYKA 3ADJA 1KJKA 5KL7A 4LF5E 4F9CB 4BMJA 1WJPA 2EN1A 3QG5C 1B69A 4B3TE 2YTQA 4B3RE 1IQSA 3BIDA 2EOIA 4L8NA 2RTXA 2L92A 4DR6E 2EN7A 1N32E 4O4KA 4DR7E 2HGHA 2LJUA 1SFEA 2UUBE 1GZ6A 1ZR9A 4BC7A 1X5WA 2EN6A 4IS1C 3MSWA 1WRJA 2Q8UA 2CT1A 4F9BB 5IT9C 4DUZE 4L5NC 2JYAA 1RC7A 2EMAA 5A6BD 1PJQA 3M99B 1GTKA 3KZYA 1WHNA 4R2SA 1DI2A 4DUYE 2GLIA 1YYWA 2EL4A 1AH5A 4P7DA 1TN9A 4IJDA 2V83A 1QU6A 2LT7A 2UUCE 1XNRE 1PDAA 2EM3A 2NUGA 2EPKX 2EP3A 2DGCA 2UXBE 2CSHA 2JY9A 3AUZA 1YSAC 4JYAE 3LLHA 4JI2E 4DR4E 2H36X 2DLQA 2RS7A 4R2CA 5AASA 4O43A 1UHZA 1PKPA 5A6KA 2EOJA 2L6MA 5A6BA 4F6NA 1N36E 1QNTA 3HPZA 4M0VA 2L2NA 1EH8A 2YU8A 4ZYEA 2EMBA 4F54A 1TF3A 5LMUE 2EPAA 1YFHA 4DV4E 1T4LB 2NA2A 4YHHE 1ZU1A 1A1KA 4WSPA 4R2RA 2V88A 2JR1A 4GEQB 2EOXA 2B7TA 2MKDA 2A25A 4WFTA 4TUGA 4R2PA 3H09A 2EOFA 2YWQA 1EH6A 4M2ZA 3HQ1A 2DMIA 4BC9A 4JI6E 4X62E 1YUJA 4JI7E 2EOSA 1IBLE 3THOB 2ENCA 4BS9A 2EPMX 4LF9E 3EPJA 2DIXA 4M9VC 4NXNE 1BBGA 3BGHA 2YRKA 3VYYA 2YT4A 4BBYA 5LLQA 4LF6E 2EMWA 2YZTA 1HNZE 2IHR1 4OX9E 3KWRA 1XMOE 1UILA 3LMLA 1F2IG 2K4VA 3ADGA 1RQ0A 5AC5A 4R2AA 2G7HA 1HNXE 2EL6A 4FK5C 2DSYA 2LE2A 3DF6A 2CTDA 2UXCE 2JOBA 1YZ9A 1J26A 4OOGC 2EMZA 4LFCE 4X8WA 4Q35B 2EMXA 2YSPA 4J8ZA 5IV8B 3J7Yp 4DR2E 4AQYE 4BHBA 2N3GA 5F3WA 4LU9A 1RMDA 2EPRA 5FLXC 1XMQE 2ODRC 4DMIA 2ELZA 4X9JA 4RHBB 1L4SA 3J7AG 4JV5E 3OTOE 2R76A 2RS6A 2YRMA 1TF6A 4MLVA 2NUEA 2EL5A 2EN4A 2GPIA 2YTJA 4B3SE 2DRPA 5KL4A 4JI4E 2L2MA 4GZNC 3J81C 4HEIA 2EWLA 4X66E 2LUPB 4LFAE 3HTXA 3THNA 2M7QA 1N33E 5AE2A 2WBTA 4R2EA 4R2QA 2E5LE 1HNWE 2LV2A 4M30A 3MHSC 2ELYA 4DR3E 2EMKA 1EKZA 3C4BA 5KL6A 4F2JC 2RQLA 2EPNA 5TSEA 3C6KA 2V89A 2EQ1A 2JXPA 5T6JA 4LFBE 2EPPA 3T1YE 4MLQA 1JK2A 3IWBA 5A6JA 1UN6B 3BBGA 3EQ1A 4WXCA 4DR5E 2LMZA 1X49A 2EPOA 2EPUA 3DJWA 2ZM6E 4TUIA 4NXME 2EPXA 5IXMB 1I94E 1A1HA 2EMLA 1HR0E 4I8OA 1XNQE 3P1XA 1A1LA 4WXDA 4DV7E 2EM7A 2RSIA 2EN3A 4K0KE 2EN8A 4WSGA 2MC6A 2VF1A 2D9HA 4NZVA 2EM9A 1AAYA 4KHPE 2LCEA 3JTZA 2VQEE 2L8TA 2EM5A 4GKJE 3KZZA 2CPNA 5LL6R 3BF2A 1DQ3A 2YRHA 1KYQA 2EPLX 1J5EE 2EZ6A 3C6MA 3HPSA 5AE1A 5ADZA 2EM0A 2I13A 1IMUA 4DV6E 3MHHC 2JP9A 4LTYA 2B7VA 2V87A 3J80C 1YUIA 1YPNA 3EPHA 2FV4B 2LO3A 2UU9E 4X65E 2KONA 2EM4A 4Q28A 2DMYA 2VQFE 2EOHA 2V86A 5AE3A 3EPLA 3ADLA 5IWAE 5A2QC 2WCC3 2EORA 3ZOQB 2LBSB 4P78A 2HHHE 1N3GA 2ADRA 1EH7A 1WHQA 2L3JA 4ZYHA 2JPAA 2JWOA 2E72A 2K7IA 1T38A 1T39A 2L3CA 4JI3E 1G2DC 3IWDA 2HC5A 3EPKA 5CFFE 1T4OA 3JU0A 2EJ4A 1MGTA 1X48A 2NABA 2NUFA 2KHXA 2LTRA 4F6MA 4R2DA 4WYQB 1DGCA 2F8BA 4DR1E 2R1FA 1T4NA 2EOZA 4O5GA 2WBSA 2MDGA 4JI1E 5BR8E 2EE8A 2WBUA 1A1IA 2VE7C 2MDRA 2E1MA 3VHTB 2UXDE 3RMPA 2V85A 2YTFA 4JI5E 2EPZA 1N34E 3IWCA 1ZBQA 4DV1E 3UK3C 4GKKE
chains in the Genus database with same CATH topology
1NEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NEI A; 
#chains in the Genus database with same CATH topology
 3TQM A;  1PJT A;  3AV0 A;  1WXR A;  2EMC A;  2ODR D;  2BB8 A;  4F9A B;  5DNY A;  1NEI A;  1P47 A;  4DV3 E;  1Z1B A;  4WX9 A;  5KL3 A;  4LF4 E;  1X6E A;  3FIG A;  4DV5 E;  2DB2 A;  3ADI A;  1FJG E;  1X6H A;  2PRT A;  1IBK E;  2I9I A;  4LF8 E;  4O24 A;  2N3H A;  2MKN A;  4NHR A;  2BBG A;  5A6A A;  1STU A;  1A1F A;  1ZAA C;  2EN2 A;  2ENH A;  2YTP A;  2EMF A;  2YTD A;  3K6Q A;  2EM8 A;  2B3T B;  2EQ0 A;  2HJJ A;  5A69 A;  2EOQ A;  4WPY A;  1JK1 A;  4R03 A;  2EM2 A;  2EPC A;  3VYX A;  2FGG A;  2LJH A;  1PJS A;  4R8O A;  2EMH A;  1UBD C;  2EOE A;  2UUA E;  2YTO A;  4ZYD A;  4DKK A;  2KOU A;  2EMI A;  2M9A A;  5LMN E;  2EMY A;  2JVA A;  3OML A;  1O0W A;  2EMG A;  1MEY C;  3C4T A;  1BB8 A;  2ENA A;  1YYO A;  3ECR A;  2YTI A;  2MC5 A;  2YTG A;  2L33 A;  1X6F A;  2F4V E;  2M4I A;  2EOM A;  4BHC A;  4KWY A;  3F6H A;  5AC4 A;  1G2F C;  1FKA E;  2EOO A;  4BCA A;  4JI8 E;  4KZS A;  2YU5 A;  2EOY A;  2LTS A;  4JI0 E;  4LF7 E;  1GQE A;  4X64 E;  2EM6 A;  4DV0 E;  2YTN A;  1SR9 A;  2YSO A;  3F6G A;  1A1G A;  3VK6 A;  3JAM C;  4HTG A;  4ZYG A;  2DLK A;  4N4R B;  2LUQ A;  2WZO A;  2FTX B;  1X3C A;  1BBO A;  1IQO A;  2LRS A;  2VRD A;  2RSM A;  1IBM E;  2EQ3 A;  2YPN A;  1NCS A;  2JOX A;  4YY3 E;  1X47 A;  1A1J A;  2M1S A;  3T1H E;  2L2K B;  2LVH A;  3HXL A;  2B9D A;  2J7J A;  2YTE A;  1LLM C;  5KL2 A;  3L00 A;  2V8Q B;  1ZBT A;  4DV2 E;  2RPC A;  2GHF A;  4B3M E;  2N8X A;  4RH8 A;  5KL5 A;  1YYK A;  3ADJ A;  1KJK A;  5KL7 A;  4LF5 E;  4F9C B;  4BMJ A;  1WJP A;  2EN1 A;  3QG5 C;  1B69 A;  4B3T E;  2YTQ A;  4B3R E;  1IQS A;  3BID A;  2EOI A;  4L8N A;  2RTX A;  2L92 A;  4DR6 E;  2EN7 A;  1N32 E;  4O4K A;  4DR7 E;  2HGH A;  2LJU A;  1SFE A;  2UUB E;  1GZ6 A;  1ZR9 A;  4BC7 A;  1X5W A;  2EN6 A;  4IS1 C;  3MSW A;  1WRJ A;  2Q8U A;  2CT1 A;  4F9B B;  5IT9 C;  4DUZ E;  4L5N C;  2JYA A;  1RC7 A;  2EMA A;  5A6B D;  1PJQ A;  3M99 B;  1GTK A;  3KZY A;  1WHN A;  4R2S A;  1DI2 A;  4DUY E;  2GLI A;  1YYW A;  2EL4 A;  1AH5 A;  4P7D A;  1TN9 A;  4IJD A;  2V83 A;  1QU6 A;  2LT7 A;  2UUC E;  1XNR E;  1PDA A;  2EM3 A;  2NUG A;  2EPK X;  2EP3 A;  2DGC A;  2UXB E;  2CSH A;  2JY9 A;  3AUZ A;  1YSA C;  4JYA E;  3LLH A;  4JI2 E;  4DR4 E;  2H36 X;  2DLQ A;  2RS7 A;  4R2C A;  5AAS A;  4O43 A;  1UHZ A;  1PKP A;  5A6K A;  2EOJ A;  2L6M A;  5A6B A;  4F6N A;  1N36 E;  1QNT A;  3HPZ A;  4M0V A;  2L2N A;  1EH8 A;  2YU8 A;  4ZYE A;  2EMB A;  4F54 A;  1TF3 A;  5LMU E;  2EPA A;  1YFH A;  4DV4 E;  1T4L B;  2NA2 A;  4YHH E;  1ZU1 A;  1A1K A;  4WSP A;  4R2R A;  2V88 A;  2JR1 A;  4GEQ B;  2EOX A;  2B7T A;  2MKD A;  2A25 A;  4WFT A;  4TUG A;  4R2P A;  3H09 A;  2EOF A;  2YWQ A;  1EH6 A;  4M2Z A;  3HQ1 A;  2DMI A;  4BC9 A;  4JI6 E;  4X62 E;  1YUJ A;  4JI7 E;  2EOS A;  1IBL E;  3THO B;  2ENC A;  4BS9 A;  2EPM X;  4LF9 E;  3EPJ A;  2DIX A;  4M9V C;  4NXN E;  1BBG A;  3BGH A;  2YRK A;  3VYY A;  2YT4 A;  4BBY A;  5LLQ A;  4LF6 E;  2EMW A;  2YZT A;  1HNZ E;  2IHR 1;  4OX9 E;  3KWR A;  1XMO E;  1UIL A;  3LML A;  1F2I G;  2K4V A;  3ADG A;  1RQ0 A;  5AC5 A;  4R2A A;  2G7H A;  1HNX E;  2EL6 A;  4FK5 C;  2DSY A;  2LE2 A;  3DF6 A;  2CTD A;  2UXC E;  2JOB A;  1YZ9 A;  1J26 A;  4OOG C;  2EMZ A;  4LFC E;  4X8W A;  4Q35 B;  2EMX A;  2YSP A;  4J8Z A;  5IV8 B;  3J7Y p;  4DR2 E;  4AQY E;  4BHB A;  2N3G A;  5F3W A;  4LU9 A;  1RMD A;  2EPR A;  5FLX C;  1XMQ E;  2ODR C;  4DMI A;  2ELZ A;  4X9J A;  4RHB B;  1L4S A;  3J7A G;  4JV5 E;  3OTO E;  2R76 A;  2RS6 A;  2YRM A;  1TF6 A;  4MLV A;  2NUE A;  2EL5 A;  2EN4 A;  2GPI A;  2YTJ A;  4B3S E;  2DRP A;  5KL4 A;  4JI4 E;  2L2M A;  4GZN C;  3J81 C;  4HEI A;  2EWL A;  4X66 E;  2LUP B;  4LFA E;  3HTX A;  3THN A;  2M7Q A;  1N33 E;  5AE2 A;  2WBT A;  4R2E A;  4R2Q A;  2E5L E;  1HNW E;  2LV2 A;  4M30 A;  3MHS C;  2ELY A;  4DR3 E;  2EMK A;  1EKZ A;  3C4B A;  5KL6 A;  4F2J C;  2RQL A;  2EPN A;  5TSE A;  3C6K A;  2V89 A;  2EQ1 A;  2JXP A;  5T6J A;  4LFB E;  2EPP A;  3T1Y E;  4MLQ A;  1JK2 A;  3IWB A;  5A6J A;  1UN6 B;  3BBG A;  3EQ1 A;  4WXC A;  4DR5 E;  2LMZ A;  1X49 A;  2EPO A;  2EPU A;  3DJW A;  2ZM6 E;  4TUI A;  4NXM E;  2EPX A;  5IXM B;  1I94 E;  1A1H A;  2EML A;  1HR0 E;  4I8O A;  1XNQ E;  3P1X A;  1A1L A;  4WXD A;  4DV7 E;  2EM7 A;  2RSI A;  2EN3 A;  4K0K E;  2EN8 A;  4WSG A;  2MC6 A;  2VF1 A;  2D9H A;  4NZV A;  2EM9 A;  1AAY A;  4KHP E;  2LCE A;  3JTZ A;  2VQE E;  2L8T A;  2EM5 A;  4GKJ E;  3KZZ A;  2CPN A;  5LL6 R;  3BF2 A;  1DQ3 A;  2YRH A;  1KYQ A;  2EPL X;  1J5E E;  2EZ6 A;  3C6M A;  3HPS A;  5AE1 A;  5ADZ A;  2EM0 A;  2I13 A;  1IMU A;  4DV6 E;  3MHH C;  2JP9 A;  4LTY A;  2B7V A;  2V87 A;  3J80 C;  1YUI A;  1YPN A;  3EPH A;  2FV4 B;  2LO3 A;  2UU9 E;  4X65 E;  2KON A;  2EM4 A;  4Q28 A;  2DMY A;  2VQF E;  2EOH A;  2V86 A;  5AE3 A;  3EPL A;  3ADL A;  5IWA E;  5A2Q C;  2WCC 3;  2EOR A;  3ZOQ B;  2LBS B;  4P78 A;  2HHH E;  1N3G A;  2ADR A;  1EH7 A;  1WHQ A;  2L3J A;  4ZYH A;  2JPA A;  2JWO A;  2E72 A;  2K7I A;  1T38 A;  1T39 A;  2L3C A;  4JI3 E;  1G2D C;  3IWD A;  2HC5 A;  3EPK A;  5CFF E;  1T4O A;  3JU0 A;  2EJ4 A;  1MGT A;  1X48 A;  2NAB A;  2NUF A;  2KHX A;  2LTR A;  4F6M A;  4R2D A;  4WYQ B;  1DGC A;  2F8B A;  4DR1 E;  2R1F A;  1T4N A;  2EOZ A;  4O5G A;  2WBS A;  2MDG A;  4JI1 E;  5BR8 E;  2EE8 A;  2WBU A;  1A1I A;  2VE7 C;  2MDR A;  2E1M A;  3VHT B;  2UXD E;  3RMP A;  2V85 A;  2YTF A;  4JI5 E;  2EPZ A;  1N34 E;  3IWC A;  1ZBQ A;  4DV1 E;  3UK3 C;  4GKK E; 
#chains in the Genus database with same CATH homology
 1NEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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