The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
9
|
sequence length |
60
|
structure length |
60
|
Chain Sequence |
MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
hypothetical protein yoaG
|
| publication title |
Solution structure of hypothetical protein dimer encoded by the Yoag gene from Escherichia coli
rcsb |
| source organism |
Escherichia coli
|
| molecule tags |
Structural genomics, unknown function
|
| total genus |
9
|
| structure length |
60
|
| sequence length |
60
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2002-12-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08956 | DUF1869 | Domain of unknown function (DUF1869) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | YoaG |
#chains in the Genus database with same CATH superfamily 1NEI A; #chains in the Genus database with same CATH topology 4P7D A; 2EOQ A; 2LO3 A; 4DV1 E; 2EOZ A; 1YUJ A; 4LFA E; 2NUE A; 4JI5 E; 3P1X A; 3EPH A; 1G2D C; 2IHR 1; 1DQ3 A; 2RTX A; 1EKZ A; 3BID A; 2EPA A; 2JR1 A; 1PDA A; 2M4I A; 2JPA A; 3C4T A; 4LFB E; 2EM9 A; 5KL4 A; 2RS6 A; 5T6J A; 1EH6 A; 3T1H E; 2DMY A; 1TF3 A; 3MSW A; 4R2S A; 1UIL A; 1F2I G; 1SFE A; 2R1F A; 2YRK A; 3JAM C; 2CTD A; 2V88 A; 3C4B A; 1NCS A; 1GQE A; 3AV0 A; 3ADJ A; 1X6F A; 4LF7 E; 2YWQ A; 3C6M A; 4N4R B; 1WRJ A; 1GZ6 A; 2YTJ A; 4WXC A; 4GKJ E; 4R2C A; 4R2D A; 2EPU A; 2EPM X; 2L92 A; 4J8Z A; 2GLI A; 2V86 A; 4M9V C; 2RSM A; 1IQS A; 2UUC E; 1T39 A; 2EMC A; 3EPJ A; 1PJS A; 1STU A; 3VK6 A; 4X64 E; 1YPN A; 1Z1B A; 4F9B B; 1XMO E; 2YTF A; 2K4V A; 2LE2 A; 1IMU A; 5ADZ A; 5AC4 A; 1YYO A; 4WSP A; 1PJT A; 2NAB A; 4F6M A; 4JI2 E; 2UXC E; 1A1K A; 2I9I A; 1FJG E; 1ZBQ A; 3EPL A; 4DV6 E; 1A1I A; 4KZS A; 2LJU A; 2WBU A; 4WX9 A; 3TQM A; 2MKD A; 2MC5 A; 4JI7 E; 5KL2 A; 1FKA E; 2EM6 A; 2EMG A; 2L33 A; 3IWD A; 3MHS C; 1BB8 A; 2BBG A; 1DI2 A; 4BHC A; 3HPZ A; 3THN A; 4DMI A; 2WCC 3; 2EN4 A; 2BB8 A; 2EOE A; 2KON A; 4M0V A; 3J7A G; 2ADR A; 1O0W A; 2YTP A; 5AE1 A; 4AQY E; 4GEQ B; 4LF5 E; 2NUG A; 1MEY C; 4GZN C; 2GHF A; 2JOX A; 4OX9 E; 2Q8U A; 2NA2 A; 2EN3 A; 2EQ0 A; 4WPY A; 4WSG A; 4LF4 E; 4ZYD A; 2EMI A; 3T1Y E; 4YY3 E; 2HHH E; 2GPI A; 2YTO A; 2I13 A; 2J7J A; 1YZ9 A; 4F2J C; 1X6H A; 2B7V A; 2VRD A; 1WXR A; 5IT9 C; 4F9A B; 4R2A A; 2PRT A; 1A1G A; 2EOM A; 2D9H A; 2EP3 A; 4DV5 E; 2EMF A; 2H36 X; 2E5L E; 2EOR A; 2L3J A; 4X8W A; 2EPZ A; 1HNW E; 2L2M A; 2EOO A; 2EN8 A; 4DV2 E; 4FK5 C; 2DIX A; 2WZO A; 4BS9 A; 5AE3 A; 2YTG A; 1TN9 A; 4KWY A; 1X48 A; 4BC9 A; 3BF2 A; 1UBD C; 2EN2 A; 1DGC A; 2EOJ A; 2EWL A; 2HC5 A; 1BBO A; 2EPO A; 3C6K A; 2RQL A; 2KOU A; 1YUI A; 2VQE E; 2YU5 A; 2VQF E; 1J5E E; 5KL3 A; 5A6B A; 4MLV A; 1LLM C; 4IS1 C; 1HNZ E; 4DR3 E; 3J7Y p; 3JU0 A; 4L5N C; 1SR9 A; 2EML A; 4R2P A; 5FLX C; 1QU6 A; 1AH5 A; 2EM2 A; 3HXL A; 4TUI A; 4DR5 E; 3J80 C; 2EOS A; 2EOI A; 2LJH A; 3QG5 C; 5F3W A; 2UXB E; 2MDR A; 2LUP B; 2G7H A; 4LFC E; 1A1L A; 2EN1 A; 3VYY A; 3KZZ A; 2MKN A; 2M9A A; 5LMU E; 1KYQ A; 1X49 A; 2FGG A; 2L6M A; 5DNY A; 5A6B D; 4DR2 E; 1A1F A; 1RC7 A; 1ZAA C; 2ELY A; 1A1J A; 4TUG A; 2V85 A; 2EMK A; 4P78 A; 4R2Q A; 1I94 E; 1X3C A; 2WBS A; 4R03 A; 5AE2 A; 2EL6 A; 3VYX A; 2L3C A; 5LMN E; 2EM3 A; 4O5G A; 1N3G A; 4YHH E; 2EPR A; 2DGC A; 2YRM A; 4O43 A; 4R2R A; 2EM7 A; 2HGH A; 1XNR E; 2EPP A; 2EN6 A; 1WHN A; 2EMX A; 4X9J A; 4JV5 E; 1N33 E; 5A2Q C; 4RHB B; 2EMA A; 2EMZ A; 4JI1 E; 4LU9 A; 3DF6 A; 4DV4 E; 2NUF A; 4DUZ E; 5LLQ A; 2RSI A; 4HTG A; 4IJD A; 5KL6 A; 4BC7 A; 2FV4 B; 1ZR9 A; 2VF1 A; 5IWA E; 4BBY A; 2ENA A; 3RMP A; 2DLK A; 2YTN A; 2EE8 A; 2EM4 A; 2EPN A; 2LCE A; 4DV3 E; 4WYQ B; 4Q28 A; 4ZYE A; 1YYW A; 4OOG C; 3IWC A; 4BMJ A; 1AAY A; 4DKK A; 3OML A; 4JI3 E; 2E1M A; 2EM5 A; 2EQ3 A; 2LV2 A; 1UN6 B; 1WHQ A; 1EH8 A; 3H09 A; 3F6G A; 2CPN A; 2EMH A; 2F4V E; 1KJK A; 3EPK A; 2RPC A; 2EMB A; 2LT7 A; 1X5W A; 2EN7 A; 5A69 A; 3J81 C; 5IV8 B; 1P47 A; 1T4N A; 2EJ4 A; 2HJJ A; 4LF9 E; 2LVH A; 2EMY A; 5A6A A; 4Q35 B; 4DR7 E; 4DV0 E; 4F9C B; 4ZYH A; 2JXP A; 5TSE A; 2YTQ A; 2M7Q A; 5AC5 A; 4X62 E; 2YTI A; 3THO B; 1XMQ E; 1G2F C; 5IXM B; 2LBS B; 4ZYG A; 2L8T A; 4X66 E; 4JYA E; 1T4L B; 1TF6 A; 2CSH A; 3LML A; 2EMW A; 4M30 A; 2ENC A; 3ADG A; 2EOH A; 2UUB E; 3K6Q A; 1MGT A; 3FIG A; 2KHX A; 3EQ1 A; 5A6K A; 4O4K A; 1RQ0 A; 2JOB A; 2EQ1 A; 3BGH A; 2DMI A; 2B7T A; 3ZOQ B; 3AUZ A; 4DUY E; 4DR1 E; 2A25 A; 4KHP E; 4M2Z A; 2E72 A; 2YRH A; 1IBL E; 2LTR A; 2M1S A; 2JYA A; 5BR8 E; 3F6H A; 1JK1 A; 4LTY A; 4DR4 E; 2ENH A; 4JI6 E; 2LTS A; 1A1H A; 3HTX A; 1ZBT A; 1N36 E; 4DV7 E; 2EM0 A; 2N3H A; 1X6E A; 2N8X A; 1QNT A; 3OTO E; 2EPK X; 2YSO A; 4RH8 A; 2B3T B; 4L8N A; 1JK2 A; 3KZY A; 1IBM E; 2ODR C; 3HQ1 A; 4F6N A; 2L2K B; 1EH7 A; 1HNX E; 5A6J A; 1BBG A; 4WXD A; 2LUQ A; 4B3M E; 1YYK A; 2VE7 C; 2JY9 A; 1RMD A; 1IBK E; 2V87 A; 2CT1 A; 1ZU1 A; 2MC6 A; 2V8Q B; 4HEI A; 2LMZ A; 3KWR A; 2ELZ A; 2YSP A; 3JTZ A; 1IQO A; 2DLQ A; 2JVA A; 4LF8 E; 3BBG A; 3MHH C; 3ADI A; 2EL4 A; 2B9D A; 2V89 A; 2EPC A; 2N3G A; 1WJP A; 3LLH A; 1XNQ E; 2YU8 A; 1PKP A; 2UUA E; 1B69 A; 1GTK A; 1PJQ A; 2RS7 A; 2UU9 E; 2YT4 A; 3UK3 C; 3VHT B; 1N34 E; 4JI0 E; 2EOY A; 1T38 A; 3HPS A; 4LF6 E; 1J26 A; 5KL5 A; 2K7I A; 3IWB A; 2YTD A; 4GKK E; 1HR0 E; 2EPX A; 1NEI A; 2F8B A; 1N32 E; 3L00 A; 3DJW A; 4NZV A; 2LRS A; 2EZ6 A; 2ODR D; 4K0K E; 4BHB A; 4B3R E; 5AAS A; 2EOX A; 4DR6 E; 2YTE A; 2YZT A; 4WFT A; 4F54 A; 1UHZ A; 2MDG A; 4NXN E; 4NXM E; 4X65 E; 4R8O A; 2V83 A; 2DRP A; 2DB2 A; 2EPL X; 5KL7 A; 2YPN A; 4NHR A; 4JI8 E; 1YSA C; 1T4O A; 4MLQ A; 4O24 A; 2FTX B; 2L2N A; 4BCA A; 5CFF E; 2DSY A; 4B3T E; 2UXD E; 4R2E A; 2ZM6 E; 2EM8 A; 2R76 A; 4JI4 E; 4B3S E; 1YFH A; 2WBT A; 2JWO A; 2JP9 A; 4I8O A; 2EOF A; 2EL5 A; 3ECR A; 3ADL A; 3M99 B; 1L4S A; 1X47 A; 5LL6 R; #chains in the Genus database with same CATH homology 1NEI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
