2HJJA

Solution nmr structure of protein ykff from escherichia coli. northeast structural genomics target er397.
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
66
structure length
66
Chain Sequence
GPFTRRQAQAVTTTYSNITLEDDQGSHFRLVVRDTEGRMVWRAWNFEPDAGEGLNRYIRTSGIRTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Escherichia coli
publication title Solution NMR structure of protein ykfF from Escherichia coli. Northeast Structural Genomics target ER397.
rcsb
molecule keywords Hypothetical protein ykfF
total genus 17
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06006 DUF905 Bacterial protein of unknown function (DUF905)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.130 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain ykff protein like domains 2hjjA00
2HJJA
chains in the Genus database with same CATH superfamily
2K4VA 2DMYA 2EM4A 2IHR1 2V8QB 4JI7E 1GZ6A 4X64E 4DV2E 1A1GA 1N3GA 1XNQE 4JI3E 2NUGA 2UXDE 5IWAE 2V83A 1KJKA 4HEIA 2YSOA 3ADLA 1LLMC 2L2MA 2BB8A 2JVAA 4O43A 4R2PA 4DR2E 4F6NA 1T38A 1TN9A 4B3RE 2NABA 3C6KA 1A1FA 3UK3C 1NEIA 1PKPA 1ZAAC 4O5GA 2EMFA 2YTJA 2WBTA 5AC5A 3T1HE 4JI5E 3JAMC 3L00A 3J81C 3JU0A 4JI2E 2LCEA 2EOZA 2YRMA 1FKAE 2EPKX 4F9CB 2RS7A 3ECRA 1SFEA 5AE1A 3IWDA 2NUFA 2CPNA 4BC7A 2VF1A 2GPIA 1YZ9A 1WHQA 1EH8A 3THNA 1HNZE 5KL2A 1T4OA 4IJDA 2L6MA 1A1KA 2DIXA 3KZYA 4R03A 2ADRA 4P78A 2MC5A 2EJ4A 3OTOE 1UBDC 4F9BB 1N33E 5IT9C 2EM6A 2EOIA 1G2DC 2VQFE 4HTGA 4O24A 1X6EA 4JV5E 2YTIA 1KYQA 3KZZA 2EMGA 2LTRA 3OMLA 4X62E 3HPZA 2EMCA 2LE2A 5LL6R 4LF9E 4DV1E 3C6MA 4F9AB 4I8OA 4BBYA 4JI1E 2HHHE 1IQOA 3M99B 2MKNA 3EPLA 3J80C 1TF3A 2N3GA 4BCAA 2YRHA 4X65E 5A6JA 1X48A 4AQYE 4TUGA 1STUA 3VYYA 2JPAA 2EMYA 4R8OA 4B3TE 3ADIA 5F3WA 1X3CA 2JOXA 1RC7A 4DV7E 4DR3E 2Q8UA 1X5WA 4RH8A 4BHBA 4JI6E 1AAYA 2EMBA 4DV4E 1UILA 4LFBE 2EOQA 2EPUA 3H09A 2JYAA 3TQMA 2VQEE 2V89A 3P1XA 1HNWE 2YSPA 4LTYA 2EOJA 4DV6E 1N34E 5FLXC 4KZSA 1QU6A 2EN6A 2CT1A 4DR7E 2MC6A 2EN8A 2LVHA 2M1SA 1N32E 3HXLA 4DUZE 2DLQA 4KHPE 3BGHA 1XMOE 1L4SA 4LFAE 2YTOA 2EPZA 4LF6E 2B3TB 2WCC3 2EMXA 1ZBTA 3T1YE 4JI0E 2EE8A 1T39A 2EM5A 2UUAE 3VHTB 4DV3E 2LT7A 5AE3A 2PRTA 2YTDA 2EOEA 4Q35B 4B3ME 2E5LE 3AUZA 3JTZA 4L8NA 2B7VA 2EM9A 3IWBA 4F6MA 2YT4A 3HTXA 2NA2A 1DGCA 3MHSC 5AE2A 3F6GA 1SR9A 2EM2A 3QG5C 2YZTA 1YSAC 3EPHA 2MDRA 4WXCA 4NXME 4JI8E 4ZYEA 2L2NA 3BIDA 4WXDA 2EPMX 2LBSB 4WSPA 2R76A 2JR1A 4DV5E 2J7JA 4R2CA 2LRSA 2EQ1A 2DB2A 4WPYA 5AC4A 3LLHA 2KONA 1F2IG 2N8XA 3MHHC 4R2DA 2WZOA 2BBGA 4BS9A 2EPOA 2EZ6A 4WYQB 4WFTA 2V86A 4DMIA 3EQ1A 1ZBQA 2LJUA 2YPNA 4DR4E 2M7QA 2EM0A 1HNXE 1BBOA 2RS6A 4X66E 2RSMA 3C4TA 3MSWA 1YPNA 1GTKA 1G2FC 2WBSA 2HGHA 2EPXA 2EN3A 4JI4E 2UUBE 4GKJE 1I94E 4TUIA 2LJHA 1N36E 2EOHA 3THOB 5DNYA 4P7DA 3VYXA 1ZR9A 2EMHA 2L3CA 1IQSA 2EPNA 2YWQA 1IBME 1WJPA 2EL4A 2MKDA 3DF6A 4FK5C 5KL3A 3IWCA 2VRDA 2NUEA 4X9JA 2B9DA 4R2RA 2EMIA 2YTGA 2HC5A 3BBGA 2EPPA 1A1JA 3DJWA 4YY3E 5KL6A 2EMKA 5T6JA 3FIGA 4LF8E 2YU8A 2L2KB 2GHFA 1JK2A 4KWYA 3VK6A 1XMQE 2UUCE 4ZYGA 4GKKE 2DMIA 2ENCA 4J8ZA 2EOYA 4L5NC 3AV0A 1PDAA 1YYOA 2UXCE 1GQEA 2FV4B 1TF6A 2I9IA 1MGTA 2F4VE 5KL4A 2KHXA 2CTDA 2EMLA 4GZNC 3ZOQB 3F6HA 5CFFE 1J5EE 2EOXA 4LFCE 4O4KA 1YUJA 4BC9A 4NZVA 2DRPA 2M9AA 4LU9A 4DR5E 5KL5A 1UHZA 1X6HA 1A1HA 3BF2A 5A6KA 2EL6A 2I13A 5A69A 2JP9A 2EN2A 1IMUA 1BBGA 4R2AA 4R2QA 5BR8E 2EN1A 2ZM6E 1XNRE 2EWLA 2WBUA 2YTEA 2R1FA 2EPCA 2EQ3A 2LTSA 1DQ3A 1A1LA 1O0WA 4DV0E 1T4LB 2EOSA 5AASA 5LLQA 5TSEA 3C4BA 1X6FA 2EMZA 2MDGA 4R2EA 4M0VA 2ODRC 2EM7A 2VE7C 2YTPA 2EL5A 1PJQA 4X8WA 4LF5E 1ZU1A 4DUYE 2L33A 2LV2A 2RSIA 2F8BA 4OOGC 4BHCA 2EPLX 4N4RB 1WRJA 2DGCA 4ZYHA 4K0KE 4MLVA 1AH5A 4BMJA 2E1MA 2EN7A 3KWRA 2EORA 2V85A 4F54A 1YUIA 4LF7E 1IBLE 2JOBA 2YTQA 4M2ZA 2EQ0A 2RPCA 5A6BD 1YYKA 2EMWA 4NHRA 2E72A 1WHNA 1B69A 1IBKE 5IXMB 2LUQA 2GLIA 2FTXB 2M4IA 2B7TA 2EOOA 2EOMA 4WX9A 2FGGA 4LF4E 2LUPB 4ZYDA 3J7AG 4YHHE 4B3SE 2ENHA 3HPSA 2JWOA 2ODRD 3LMLA 3HQ1A 3RMPA 3K6QA 5A6AA 2UXBE 1MEYC 1BB8A 4MLQA 1WXRA 1Z1BA 4NXNE 2G7HA 2RTXA 5A6BA 1EH7A 1P47A 4R2SA 1PJTA 1PJSA 2EP3A 1EH6A 2EM8A 2YTFA 3J7Yp 2DLKA 2ELYA 1FJGE 2RQLA 4GEQB 1X47A 2UU9E 1X49A 4M30A 2L92A 4Q28A 4DR6E 4IS1C 2EOFA 2N3HA 1YYWA 3ADGA 3EPKA 2EN4A 3EPJA 4DR1E 2HJJA 4JYAE 2EMAA 2DSYA 2K7IA 2CSHA 4F2JC 1HR0E 1NCSA 5A2QC 2A25A 1EKZA 1RQ0A 2H36X 2V88A 2EM3A 5ADZA 1YFHA 5LMUE 2V87A 2L8TA 1DI2A 4DKKA 4M9VC 2ENAA 2ELZA 4OX9E 2YRKA 1J26A 5LMNE 2D9HA 2LO3A 2JXPA 1RMDA 4RHBB 5KL7A 5IV8B 2EPAA 2YTNA 1A1IA 2YU5A 2EPRA 1QNTA 2LMZA 2JY9A 1UN6B 2KOUA 1T4NA 4WSGA 1JK1A 2L3JA 3ADJA
chains in the Genus database with same CATH topology
2HJJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HJJ A; 
#chains in the Genus database with same CATH topology
 2K4V A;  2DMY A;  2EM4 A;  2IHR 1;  2V8Q B;  4JI7 E;  1GZ6 A;  4X64 E;  4DV2 E;  1A1G A;  1N3G A;  1XNQ E;  4JI3 E;  2NUG A;  2UXD E;  5IWA E;  2V83 A;  1KJK A;  4HEI A;  2YSO A;  3ADL A;  1LLM C;  2L2M A;  2BB8 A;  2JVA A;  4O43 A;  4R2P A;  4DR2 E;  4F6N A;  1T38 A;  1TN9 A;  4B3R E;  2NAB A;  3C6K A;  1A1F A;  3UK3 C;  1NEI A;  1PKP A;  1ZAA C;  4O5G A;  2EMF A;  2YTJ A;  2WBT A;  5AC5 A;  3T1H E;  4JI5 E;  3JAM C;  3L00 A;  3J81 C;  3JU0 A;  4JI2 E;  2LCE A;  2EOZ A;  2YRM A;  1FKA E;  2EPK X;  4F9C B;  2RS7 A;  3ECR A;  1SFE A;  5AE1 A;  3IWD A;  2NUF A;  2CPN A;  4BC7 A;  2VF1 A;  2GPI A;  1YZ9 A;  1WHQ A;  1EH8 A;  3THN A;  1HNZ E;  5KL2 A;  1T4O A;  4IJD A;  2L6M A;  1A1K A;  2DIX A;  3KZY A;  4R03 A;  2ADR A;  4P78 A;  2MC5 A;  2EJ4 A;  3OTO E;  1UBD C;  4F9B B;  1N33 E;  5IT9 C;  2EM6 A;  2EOI A;  1G2D C;  2VQF E;  4HTG A;  4O24 A;  1X6E A;  4JV5 E;  2YTI A;  1KYQ A;  3KZZ A;  2EMG A;  2LTR A;  3OML A;  4X62 E;  3HPZ A;  2EMC A;  2LE2 A;  5LL6 R;  4LF9 E;  4DV1 E;  3C6M A;  4F9A B;  4I8O A;  4BBY A;  4JI1 E;  2HHH E;  1IQO A;  3M99 B;  2MKN A;  3EPL A;  3J80 C;  1TF3 A;  2N3G A;  4BCA A;  2YRH A;  4X65 E;  5A6J A;  1X48 A;  4AQY E;  4TUG A;  1STU A;  3VYY A;  2JPA A;  2EMY A;  4R8O A;  4B3T E;  3ADI A;  5F3W A;  1X3C A;  2JOX A;  1RC7 A;  4DV7 E;  4DR3 E;  2Q8U A;  1X5W A;  4RH8 A;  4BHB A;  4JI6 E;  1AAY A;  2EMB A;  4DV4 E;  1UIL A;  4LFB E;  2EOQ A;  2EPU A;  3H09 A;  2JYA A;  3TQM A;  2VQE E;  2V89 A;  3P1X A;  1HNW E;  2YSP A;  4LTY A;  2EOJ A;  4DV6 E;  1N34 E;  5FLX C;  4KZS A;  1QU6 A;  2EN6 A;  2CT1 A;  4DR7 E;  2MC6 A;  2EN8 A;  2LVH A;  2M1S A;  1N32 E;  3HXL A;  4DUZ E;  2DLQ A;  4KHP E;  3BGH A;  1XMO E;  1L4S A;  4LFA E;  2YTO A;  2EPZ A;  4LF6 E;  2B3T B;  2WCC 3;  2EMX A;  1ZBT A;  3T1Y E;  4JI0 E;  2EE8 A;  1T39 A;  2EM5 A;  2UUA E;  3VHT B;  4DV3 E;  2LT7 A;  5AE3 A;  2PRT A;  2YTD A;  2EOE A;  4Q35 B;  4B3M E;  2E5L E;  3AUZ A;  3JTZ A;  4L8N A;  2B7V A;  2EM9 A;  3IWB A;  4F6M A;  2YT4 A;  3HTX A;  2NA2 A;  1DGC A;  3MHS C;  5AE2 A;  3F6G A;  1SR9 A;  2EM2 A;  3QG5 C;  2YZT A;  1YSA C;  3EPH A;  2MDR A;  4WXC A;  4NXM E;  4JI8 E;  4ZYE A;  2L2N A;  3BID A;  4WXD A;  2EPM X;  2LBS B;  4WSP A;  2R76 A;  2JR1 A;  4DV5 E;  2J7J A;  4R2C A;  2LRS A;  2EQ1 A;  2DB2 A;  4WPY A;  5AC4 A;  3LLH A;  2KON A;  1F2I G;  2N8X A;  3MHH C;  4R2D A;  2WZO A;  2BBG A;  4BS9 A;  2EPO A;  2EZ6 A;  4WYQ B;  4WFT A;  2V86 A;  4DMI A;  3EQ1 A;  1ZBQ A;  2LJU A;  2YPN A;  4DR4 E;  2M7Q A;  2EM0 A;  1HNX E;  1BBO A;  2RS6 A;  4X66 E;  2RSM A;  3C4T A;  3MSW A;  1YPN A;  1GTK A;  1G2F C;  2WBS A;  2HGH A;  2EPX A;  2EN3 A;  4JI4 E;  2UUB E;  4GKJ E;  1I94 E;  4TUI A;  2LJH A;  1N36 E;  2EOH A;  3THO B;  5DNY A;  4P7D A;  3VYX A;  1ZR9 A;  2EMH A;  2L3C A;  1IQS A;  2EPN A;  2YWQ A;  1IBM E;  1WJP A;  2EL4 A;  2MKD A;  3DF6 A;  4FK5 C;  5KL3 A;  3IWC A;  2VRD A;  2NUE A;  4X9J A;  2B9D A;  4R2R A;  2EMI A;  2YTG A;  2HC5 A;  3BBG A;  2EPP A;  1A1J A;  3DJW A;  4YY3 E;  5KL6 A;  2EMK A;  5T6J A;  3FIG A;  4LF8 E;  2YU8 A;  2L2K B;  2GHF A;  1JK2 A;  4KWY A;  3VK6 A;  1XMQ E;  2UUC E;  4ZYG A;  4GKK E;  2DMI A;  2ENC A;  4J8Z A;  2EOY A;  4L5N C;  3AV0 A;  1PDA A;  1YYO A;  2UXC E;  1GQE A;  2FV4 B;  1TF6 A;  2I9I A;  1MGT A;  2F4V E;  5KL4 A;  2KHX A;  2CTD A;  2EML A;  4GZN C;  3ZOQ B;  3F6H A;  5CFF E;  1J5E E;  2EOX A;  4LFC E;  4O4K A;  1YUJ A;  4BC9 A;  4NZV A;  2DRP A;  2M9A A;  4LU9 A;  4DR5 E;  5KL5 A;  1UHZ A;  1X6H A;  1A1H A;  3BF2 A;  5A6K A;  2EL6 A;  2I13 A;  5A69 A;  2JP9 A;  2EN2 A;  1IMU A;  1BBG A;  4R2A A;  4R2Q A;  5BR8 E;  2EN1 A;  2ZM6 E;  1XNR E;  2EWL A;  2WBU A;  2YTE A;  2R1F A;  2EPC A;  2EQ3 A;  2LTS A;  1DQ3 A;  1A1L A;  1O0W A;  4DV0 E;  1T4L B;  2EOS A;  5AAS A;  5LLQ A;  5TSE A;  3C4B A;  1X6F A;  2EMZ A;  2MDG A;  4R2E A;  4M0V A;  2ODR C;  2EM7 A;  2VE7 C;  2YTP A;  2EL5 A;  1PJQ A;  4X8W A;  4LF5 E;  1ZU1 A;  4DUY E;  2L33 A;  2LV2 A;  2RSI A;  2F8B A;  4OOG C;  4BHC A;  2EPL X;  4N4R B;  1WRJ A;  2DGC A;  4ZYH A;  4K0K E;  4MLV A;  1AH5 A;  4BMJ A;  2E1M A;  2EN7 A;  3KWR A;  2EOR A;  2V85 A;  4F54 A;  1YUI A;  4LF7 E;  1IBL E;  2JOB A;  2YTQ A;  4M2Z A;  2EQ0 A;  2RPC A;  5A6B D;  1YYK A;  2EMW A;  4NHR A;  2E72 A;  1WHN A;  1B69 A;  1IBK E;  5IXM B;  2LUQ A;  2GLI A;  2FTX B;  2M4I A;  2B7T A;  2EOO A;  2EOM A;  4WX9 A;  2FGG A;  4LF4 E;  2LUP B;  4ZYD A;  3J7A G;  4YHH E;  4B3S E;  2ENH A;  3HPS A;  2JWO A;  2ODR D;  3LML A;  3HQ1 A;  3RMP A;  3K6Q A;  5A6A A;  2UXB E;  1MEY C;  1BB8 A;  4MLQ A;  1WXR A;  1Z1B A;  4NXN E;  2G7H A;  2RTX A;  5A6B A;  1EH7 A;  1P47 A;  4R2S A;  1PJT A;  1PJS A;  2EP3 A;  1EH6 A;  2EM8 A;  2YTF A;  3J7Y p;  2DLK A;  2ELY A;  1FJG E;  2RQL A;  4GEQ B;  1X47 A;  2UU9 E;  1X49 A;  4M30 A;  2L92 A;  4Q28 A;  4DR6 E;  4IS1 C;  2EOF A;  2N3H A;  1YYW A;  3ADG A;  3EPK A;  2EN4 A;  3EPJ A;  4DR1 E;  2HJJ A;  4JYA E;  2EMA A;  2DSY A;  2K7I A;  2CSH A;  4F2J C;  1HR0 E;  1NCS A;  5A2Q C;  2A25 A;  1EKZ A;  1RQ0 A;  2H36 X;  2V88 A;  2EM3 A;  5ADZ A;  1YFH A;  5LMU E;  2V87 A;  2L8T A;  1DI2 A;  4DKK A;  4M9V C;  2ENA A;  2ELZ A;  4OX9 E;  2YRK A;  1J26 A;  5LMN E;  2D9H A;  2LO3 A;  2JXP A;  1RMD A;  4RHB B;  5KL7 A;  5IV8 B;  2EPA A;  2YTN A;  1A1I A;  2YU5 A;  2EPR A;  1QNT A;  2LMZ A;  2JY9 A;  1UN6 B;  2KOU A;  1T4N A;  4WSG A;  1JK1 A;  2L3J A;  3ADJ A; 
#chains in the Genus database with same CATH homology
 2HJJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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