The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
248
|
sequence length |
626
|
structure length |
592
|
Chain Sequence |
ATFLGLSSKQEKALVRLDKYLNLGEIAVSLVTDSATSIKVEGRQGYYQVSYKQPHQLYRALALLSAALRSGQDEVQIEEEAAYEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGIKEVQELRDVEDILLIGEEKVYDLIEGMFQTMAHLHTRKINIGMDEAHLVGLGRYLIKHGFQNRSLLMCQHLERVLDIADKYGFNCQMWSDMFFPEETRVYLDRLKERVTLVYWDYYDIAFAGGAWKWIGFTPHNHFSRLVAIEANKACRKNQVKEVIVTGWGDNGGETSQFSVLPALQIWAELAYRNDLKKVSEHFLVSTGLDFDDFMKIDLANLLPDLPDNLSGINPNRYVLYQDVLCPLLEQHIRPEKDKQHFASSAQQLGEISKRAGEYAYIFETQAQLNALLALKISITSGIQKAYRNGDKEHLSALAEKDFPQLYQMVEDFSDQFSRQWQQENKIFGLDTIDIRFGGLLKRIKRAQERLEQFISGQIDCVEELEQEILPFNDFYKDQGLTATTANQWHLIATASTIYTT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
N-acetyl-beta-D-glucosaminidase
|
| publication title |
Structure of N-acetyl-beta-D-glucosaminidase (GcnA) from the Endocarditis Pathogen Streptococcus gordonii and its Complex with the Mechanism-based Inhibitor NAG-thiazoline
pubmed doi rcsb |
| source organism |
Streptococcus gordonii
|
| molecule tags |
Hydrolase
|
| total genus |
248
|
| structure length |
592
|
| sequence length |
626
|
| ec nomenclature |
ec
3.2.1.52: Beta-N-acetylhexosaminidase. |
| pdb deposition date | 2007-03-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| X | PF00728 | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain |
| X | PF18088 | Glyco_H_20C_C | Glycoside Hydrolase 20C C-terminal domain |
| X | PF18229 | GcnA_N | N-acetyl-beta-D-glucosaminidase N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | N-acetyl-b-d-glucoasminidase | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | N-acetyl-beta-d-glucosaminidase |
