3BIDA

Crystal structure of the nmb1088 protein from neisseria meningitidis. northeast structural genomics consortium target mr91
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
58
structure length
58
Chain Sequence
MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLLKSTTAATPVKEVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UPF0339 protein NMB1088
publication title Crystal structure of the NMB1088 protein from Neisseria meningitidis.
rcsb
source organism Neisseria meningitidis mc58
molecule tags Structural genomics, unknown function
total genus 9
structure length 58
sequence length 58
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2007-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.160 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain YegP-like 3bidA01
2K7IA 3BIDA
chains in the Genus database with same CATH superfamily
4ZYEA 2NUGA 2NUFA 2VE7C 2EQ1A 2G7HA 2EN6A 1T39A 1X6EA 5TSEA 3DF6A 4HTGA 1KYQA 1STUA 1KJKA 1PJSA 2V88A 1YUIA 4ZYGA 4M2ZA 4DV3E 2RTXA 2EL6A 1ZBTA 1L4SA 2I9IA 5KL7A 2EPZA 4R2PA 1A1FA 2J7JA 1WRJA 2EPMX 3M99B 1GTKA 1PDAA 2EMIA 4DUYE 2DSYA 2EPXA 3AV0A 4ZYDA 2EL5A 2RQLA 3BGHA 2VF1A 1YYKA 1YUJA 3VHTB 2JYAA 4TUGA 2L3JA 3TQMA 4R2CA 2YU8A 3VK6A 5A69A 2UXBE 1X49A 5AC5A 2EMXA 2L3CA 1N36E 4BCAA 1J26A 2RS7A 4RH8A 3J7Yp 1EH7A 2DMIA 1GZ6A 2EM6A 2YTGA 2M1SA 2R76A 1MGTA 3EQ1A 4R2AA 3EPKA 4M9VC 2ENAA 4LF5E 2ODRC 1IMUA 4IJDA 2B7VA 3FIGA 4LF7E 2NABA 2CPNA 4DKKA 2UUAE 5KL2A 2GPIA 2V8QB 1XNQE 2L2MA 5A6KA 3ADJA 3ADGA 2YTQA 3IWDA 1WXRA 2EWLA 2V85A 2EORA 2E5LE 2EMCA 2WZOA 2EM3A 1DQ3A 2YTDA 3BIDA 2GHFA 5LMNE 2EQ3A 2LUPB 2F8BA 1HNXE 4IS1C 2KOUA 5KL5A 4LF4E 3HQ1A 1N3GA 2EMGA 2ELYA 4JI2E 2HJJA 4GEQB 4JI3E 4BHCA 2EZ6A 2ENHA 2DMYA 2EM0A 4MLQA 2EN7A 1A1HA 3LMLA 3DJWA 3IWBA 2YZTA 2K7IA 4KZSA 3C4TA 2EPCA 2EOOA 4M0VA 2E1MA 4F9CB 4L8NA 4YY3E 2EM4A 4MLVA 2EPKX 1X6HA 1FJGE 1LLMC 2WCC3 2ODRD 4DV4E 2LTSA 4AQYE 4X65E 3ADLA 4O4KA 2GLIA 3IWCA 1IBME 4JYAE 2LO3A 2EL4A 1BBOA 3H09A 2R1FA 1P47A 3C6MA 3KWRA 2DB2A 1WHNA 2EOMA 1T38A 3BBGA 1HR0E 4P7DA 3THNA 2EM9A 1AH5A 2EE8A 4DR6E 4BS9A 1NEIA 4M30A 4OOGC 2HHHE 1I94E 1WHQA 2DGCA 5DNYA 2BB8A 3HPSA 4JI7E 4BBYA 1TN9A 1QU6A 2EOIA 2V87A 4BC7A 2MKDA 2EN1A 2EP3A 4DV7E 2L8TA 2UU9E 2LTRA 2EM2A 2LJUA 2YSPA 2K4VA 1BBGA 2YT4A 4R2QA 4KHPE 2LV2A 2CTDA 4B3TE 2B7TA 4J8ZA 5F3WA 3JTZA 4O24A 2LJHA 3KZZA 1A1GA 2MDGA 2HC5A 1JK1A 4R2EA 1ZU1A 2LT7A 1IBLE 1ZBQA 5LL6R 2EM8A 2NA2A 4R03A 2WBSA 1Z1BA 2YTFA 1DI2A 4F6MA 5IV8B 4JI5E 4L5NC 5A6AA 2EPLX 4X8WA 3OMLA 4LF8E 2EMLA 2JOBA 3ECRA 2DLQA 2M9AA 2IHR1 5IWAE 3BF2A 2UUCE 4LTYA 2YWQA 3ADIA 4GKKE 2HGHA 2L2KB 2EPUA 4DR2E 3VYYA 5AC4A 4JV5E 1QNTA 2EMAA 4JI4E 1A1JA 4X66E 4F9BB 1UBDC 2N3HA 1X3CA 2RSIA 4BMJA 4JI8E 4JI1E 2M7QA 1UN6B 2Q8UA 5LMUE 1T4LB 2JY9A 2LMZA 2YTJA 2RPCA 4DV2E 4WSPA 2PRTA 2YTNA 2JOXA 3LLHA 2E72A 2KHXA 2YTIA 5IT9C 2ENCA 3OTOE 2RS6A 4F6NA 1WJPA 2EMKA 2FGGA 2EMWA 1ZR9A 5KL4A 2VQEE 2JXPA 4WFTA 4Q35B 5LLQA 2EN3A 2MDRA 3J81C 4DV6E 4DR3E 4LU9A 1TF6A 1N34E 2VRDA 2EPRA 5KL6A 2YTEA 2N8XA 4FK5C 4X9JA 2JP9A 5A6BA 4WX9A 3J7AG 2EN8A 3ZOQB 2EMZA 4DV1E 5KL3A 4DR1E 1EKZA 2UUBE 2EMBA 1GQEA 3T1YE 2EPAA 2V89A 2H36X 2YTPA 1TF3A 5AE1A 2M4IA 2EOXA 2YSOA 2V86A 1X6FA 1O0WA 2ELZA 2A25A 2L2NA 3AUZA 4O5GA 4WPYA 3MSWA 5A6BD 4Q28A 3MHHC 2WBUA 2L6MA 2VQFE 4DR4E 4P78A 4LFAE 1AAYA 1B69A 2ZM6E 4KWYA 2YRKA 2JPAA 1DGCA 2NUEA 4F9AB 2LVHA 2EMYA 2YRMA 2LCEA 3J80C 1G2FC 2CT1A 2EM5A 2B9DA 3F6GA 2EPNA 4DR7E 2F4VE 2JR1A 2RSMA 4HEIA 4RHBB 3L00A 1UHZA 3T1HE 1YYWA 1IBKE 3EPJA 4LF6E 4R2RA 3KZYA 3RMPA 2EPOA 1SR9A 2YTOA 2CSHA 4R2SA 1IQSA 4WXDA 1T4NA 2EOYA 4X64E 3MHSC 1XMQE 1JK2A 1IQOA 4BHBA 4DV5E 1A1IA 2EOZA 5ADZA 1PJTA 4WSGA 3P1XA 1N33E 2YU5A 2MC5A 1J5EE 2YPNA 4LFBE 4R8OA 4LFCE 3QG5C 1YZ9A 2MC6A 2L92A 4K0KE 3JU0A 1A1KA 2LUQA 4F54A 2BBGA 1EH6A 2EMFA 4O43A 2N3GA 1X48A 3K6QA 3EPHA 1G2DC 2EOSA 2EM7A 1N32E 4GKJE 4BC9A 1T4OA 4N4RB 3EPLA 2ADRA 4WYQB 5CFFE 3HXLA 5AE3A 2LRSA 1XNRE 2WBTA 5A6JA 4YHHE 1XMOE 4JI0E 4NXME 2EOQA 1NCSA 1MEYC 5FLXC 4X62E 4GZNC 1YPNA 2B3TB 1A1LA 1BB8A 2V83A 4TUIA 4JI6E 1YFHA 2EN4A 4NXNE 1HNWE 2LE2A 4DMIA 2EOFA 5BR8E 2EOEA 1EH8A 2EOHA 3C4BA 4NZVA 1RC7A 1ZAAC 4DR5E 4F2JC 1X5WA 4B3ME 2L33A 3C6KA 4I8OA 1YSAC 4B3RE 4NHRA 2I13A 3F6HA 3HPZA 4R2DA 2EOJA 2D9HA 2KONA 3UK3C 4OX9E 5AE2A 2LBSB 2EMHA 5IXMB 2DLKA 5T6JA 1PKPA 4LF9E 3JAMC 2FV4B 1SFEA 4ZYHA 3THOB 2JVAA 2UXDE 2UXCE 4DUZE 1HNZE 1X47A 3VYXA 2DIXA 2DRPA 2MKNA 2EPPA 2YRHA 1PJQA 1FKAE 1RQ0A 1YYOA 2EN2A 4WXCA 5A2QC 3HTXA 4DV0E 4B3SE 5AASA 1UILA 2EJ4A 2EQ0A 1F2IG 2JWOA 1RMDA 2FTXB
chains in the Genus database with same CATH topology
2K7IA 3BIDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K7I A;  3BID A; 
#chains in the Genus database with same CATH topology
 4ZYE A;  2NUG A;  2NUF A;  2VE7 C;  2EQ1 A;  2G7H A;  2EN6 A;  1T39 A;  1X6E A;  5TSE A;  3DF6 A;  4HTG A;  1KYQ A;  1STU A;  1KJK A;  1PJS A;  2V88 A;  1YUI A;  4ZYG A;  4M2Z A;  4DV3 E;  2RTX A;  2EL6 A;  1ZBT A;  1L4S A;  2I9I A;  5KL7 A;  2EPZ A;  4R2P A;  1A1F A;  2J7J A;  1WRJ A;  2EPM X;  3M99 B;  1GTK A;  1PDA A;  2EMI A;  4DUY E;  2DSY A;  2EPX A;  3AV0 A;  4ZYD A;  2EL5 A;  2RQL A;  3BGH A;  2VF1 A;  1YYK A;  1YUJ A;  3VHT B;  2JYA A;  4TUG A;  2L3J A;  3TQM A;  4R2C A;  2YU8 A;  3VK6 A;  5A69 A;  2UXB E;  1X49 A;  5AC5 A;  2EMX A;  2L3C A;  1N36 E;  4BCA A;  1J26 A;  2RS7 A;  4RH8 A;  3J7Y p;  1EH7 A;  2DMI A;  1GZ6 A;  2EM6 A;  2YTG A;  2M1S A;  2R76 A;  1MGT A;  3EQ1 A;  4R2A A;  3EPK A;  4M9V C;  2ENA A;  4LF5 E;  2ODR C;  1IMU A;  4IJD A;  2B7V A;  3FIG A;  4LF7 E;  2NAB A;  2CPN A;  4DKK A;  2UUA E;  5KL2 A;  2GPI A;  2V8Q B;  1XNQ E;  2L2M A;  5A6K A;  3ADJ A;  3ADG A;  2YTQ A;  3IWD A;  1WXR A;  2EWL A;  2V85 A;  2EOR A;  2E5L E;  2EMC A;  2WZO A;  2EM3 A;  1DQ3 A;  2YTD A;  3BID A;  2GHF A;  5LMN E;  2EQ3 A;  2LUP B;  2F8B A;  1HNX E;  4IS1 C;  2KOU A;  5KL5 A;  4LF4 E;  3HQ1 A;  1N3G A;  2EMG A;  2ELY A;  4JI2 E;  2HJJ A;  4GEQ B;  4JI3 E;  4BHC A;  2EZ6 A;  2ENH A;  2DMY A;  2EM0 A;  4MLQ A;  2EN7 A;  1A1H A;  3LML A;  3DJW A;  3IWB A;  2YZT A;  2K7I A;  4KZS A;  3C4T A;  2EPC A;  2EOO A;  4M0V A;  2E1M A;  4F9C B;  4L8N A;  4YY3 E;  2EM4 A;  4MLV A;  2EPK X;  1X6H A;  1FJG E;  1LLM C;  2WCC 3;  2ODR D;  4DV4 E;  2LTS A;  4AQY E;  4X65 E;  3ADL A;  4O4K A;  2GLI A;  3IWC A;  1IBM E;  4JYA E;  2LO3 A;  2EL4 A;  1BBO A;  3H09 A;  2R1F A;  1P47 A;  3C6M A;  3KWR A;  2DB2 A;  1WHN A;  2EOM A;  1T38 A;  3BBG A;  1HR0 E;  4P7D A;  3THN A;  2EM9 A;  1AH5 A;  2EE8 A;  4DR6 E;  4BS9 A;  1NEI A;  4M30 A;  4OOG C;  2HHH E;  1I94 E;  1WHQ A;  2DGC A;  5DNY A;  2BB8 A;  3HPS A;  4JI7 E;  4BBY A;  1TN9 A;  1QU6 A;  2EOI A;  2V87 A;  4BC7 A;  2MKD A;  2EN1 A;  2EP3 A;  4DV7 E;  2L8T A;  2UU9 E;  2LTR A;  2EM2 A;  2LJU A;  2YSP A;  2K4V A;  1BBG A;  2YT4 A;  4R2Q A;  4KHP E;  2LV2 A;  2CTD A;  4B3T E;  2B7T A;  4J8Z A;  5F3W A;  3JTZ A;  4O24 A;  2LJH A;  3KZZ A;  1A1G A;  2MDG A;  2HC5 A;  1JK1 A;  4R2E A;  1ZU1 A;  2LT7 A;  1IBL E;  1ZBQ A;  5LL6 R;  2EM8 A;  2NA2 A;  4R03 A;  2WBS A;  1Z1B A;  2YTF A;  1DI2 A;  4F6M A;  5IV8 B;  4JI5 E;  4L5N C;  5A6A A;  2EPL X;  4X8W A;  3OML A;  4LF8 E;  2EML A;  2JOB A;  3ECR A;  2DLQ A;  2M9A A;  2IHR 1;  5IWA E;  3BF2 A;  2UUC E;  4LTY A;  2YWQ A;  3ADI A;  4GKK E;  2HGH A;  2L2K B;  2EPU A;  4DR2 E;  3VYY A;  5AC4 A;  4JV5 E;  1QNT A;  2EMA A;  4JI4 E;  1A1J A;  4X66 E;  4F9B B;  1UBD C;  2N3H A;  1X3C A;  2RSI A;  4BMJ A;  4JI8 E;  4JI1 E;  2M7Q A;  1UN6 B;  2Q8U A;  5LMU E;  1T4L B;  2JY9 A;  2LMZ A;  2YTJ A;  2RPC A;  4DV2 E;  4WSP A;  2PRT A;  2YTN A;  2JOX A;  3LLH A;  2E72 A;  2KHX A;  2YTI A;  5IT9 C;  2ENC A;  3OTO E;  2RS6 A;  4F6N A;  1WJP A;  2EMK A;  2FGG A;  2EMW A;  1ZR9 A;  5KL4 A;  2VQE E;  2JXP A;  4WFT A;  4Q35 B;  5LLQ A;  2EN3 A;  2MDR A;  3J81 C;  4DV6 E;  4DR3 E;  4LU9 A;  1TF6 A;  1N34 E;  2VRD A;  2EPR A;  5KL6 A;  2YTE A;  2N8X A;  4FK5 C;  4X9J A;  2JP9 A;  5A6B A;  4WX9 A;  3J7A G;  2EN8 A;  3ZOQ B;  2EMZ A;  4DV1 E;  5KL3 A;  4DR1 E;  1EKZ A;  2UUB E;  2EMB A;  1GQE A;  3T1Y E;  2EPA A;  2V89 A;  2H36 X;  2YTP A;  1TF3 A;  5AE1 A;  2M4I A;  2EOX A;  2YSO A;  2V86 A;  1X6F A;  1O0W A;  2ELZ A;  2A25 A;  2L2N A;  3AUZ A;  4O5G A;  4WPY A;  3MSW A;  5A6B D;  4Q28 A;  3MHH C;  2WBU A;  2L6M A;  2VQF E;  4DR4 E;  4P78 A;  4LFA E;  1AAY A;  1B69 A;  2ZM6 E;  4KWY A;  2YRK A;  2JPA A;  1DGC A;  2NUE A;  4F9A B;  2LVH A;  2EMY A;  2YRM A;  2LCE A;  3J80 C;  1G2F C;  2CT1 A;  2EM5 A;  2B9D A;  3F6G A;  2EPN A;  4DR7 E;  2F4V E;  2JR1 A;  2RSM A;  4HEI A;  4RHB B;  3L00 A;  1UHZ A;  3T1H E;  1YYW A;  1IBK E;  3EPJ A;  4LF6 E;  4R2R A;  3KZY A;  3RMP A;  2EPO A;  1SR9 A;  2YTO A;  2CSH A;  4R2S A;  1IQS A;  4WXD A;  1T4N A;  2EOY A;  4X64 E;  3MHS C;  1XMQ E;  1JK2 A;  1IQO A;  4BHB A;  4DV5 E;  1A1I A;  2EOZ A;  5ADZ A;  1PJT A;  4WSG A;  3P1X A;  1N33 E;  2YU5 A;  2MC5 A;  1J5E E;  2YPN A;  4LFB E;  4R8O A;  4LFC E;  3QG5 C;  1YZ9 A;  2MC6 A;  2L92 A;  4K0K E;  3JU0 A;  1A1K A;  2LUQ A;  4F54 A;  2BBG A;  1EH6 A;  2EMF A;  4O43 A;  2N3G A;  1X48 A;  3K6Q A;  3EPH A;  1G2D C;  2EOS A;  2EM7 A;  1N32 E;  4GKJ E;  4BC9 A;  1T4O A;  4N4R B;  3EPL A;  2ADR A;  4WYQ B;  5CFF E;  3HXL A;  5AE3 A;  2LRS A;  1XNR E;  2WBT A;  5A6J A;  4YHH E;  1XMO E;  4JI0 E;  4NXM E;  2EOQ A;  1NCS A;  1MEY C;  5FLX C;  4X62 E;  4GZN C;  1YPN A;  2B3T B;  1A1L A;  1BB8 A;  2V83 A;  4TUI A;  4JI6 E;  1YFH A;  2EN4 A;  4NXN E;  1HNW E;  2LE2 A;  4DMI A;  2EOF A;  5BR8 E;  2EOE A;  1EH8 A;  2EOH A;  3C4B A;  4NZV A;  1RC7 A;  1ZAA C;  4DR5 E;  4F2J C;  1X5W A;  4B3M E;  2L33 A;  3C6K A;  4I8O A;  1YSA C;  4B3R E;  4NHR A;  2I13 A;  3F6H A;  3HPZ A;  4R2D A;  2EOJ A;  2D9H A;  2KON A;  3UK3 C;  4OX9 E;  5AE2 A;  2LBS B;  2EMH A;  5IXM B;  2DLK A;  5T6J A;  1PKP A;  4LF9 E;  3JAM C;  2FV4 B;  1SFE A;  4ZYH A;  3THO B;  2JVA A;  2UXD E;  2UXC E;  4DUZ E;  1HNZ E;  1X47 A;  3VYX A;  2DIX A;  2DRP A;  2MKN A;  2EPP A;  2YRH A;  1PJQ A;  1FKA E;  1RQ0 A;  1YYO A;  2EN2 A;  4WXC A;  5A2Q C;  3HTX A;  4DV0 E;  4B3S E;  5AAS A;  1UIL A;  2EJ4 A;  2EQ0 A;  1F2I G;  2JWO A;  1RMD A;  2FTX B; 
#chains in the Genus database with same CATH homology
 2K7I A;  3BID A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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