3BIDA

Crystal structure of the nmb1088 protein from neisseria meningitidis. northeast structural genomics consortium target mr91
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
58
structure length
58
Chain Sequence
MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLLKSTTAATPVKEVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0339 protein NMB1088
publication title Crystal structure of the NMB1088 protein from Neisseria meningitidis.
rcsb
source organism Neisseria meningitidis mc58
total genus 9
structure length 58
sequence length 58
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2007-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.160 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain YegP-like 3bidA01
3BIDA 2K7IA
chains in the Genus database with same CATH superfamily
2ZM6E 2JOXA 4X66E 2GPIA 2EMLA 2EWLA 2LJHA 4Q28A 2UUAE 1F2IG 1B69A 3JU0A 2EMYA 3J7AG 2HC5A 4DV0E 4DR4E 4K0KE 2KONA 2EPZA 2EOIA 4DR1E 2JXPA 4YHHE 4NZVA 4DR6E 2EMFA 5AASA 4M30A 5KL4A 2E1MA 4ZYEA 4TUGA 3ADJA 1DGCA 2CT1A 2EM5A 4JI1E 2YU5A 3ADGA 5LL6R 4BMJA 4X62E 3T1YE 2K7IA 1MGTA 4DR2E 2DB2A 4F9CB 3OMLA 4R2CA 1A1JA 2UXDE 4MLQA 2EOMA 3KZZA 1BBGA 2N8XA 3IWBA 2YPNA 2KOUA 2VQEE 2EN6A 2EPRA 4ZYDA 3C4TA 4F6MA 1YZ9A 3THOB 4GZNC 1XNQE 2EM9A 2EPUA 2YRMA 5AC5A 1RQ0A 4ZYHA 4F9BB 5KL5A 3F6GA 2EN4A 1UHZA 2R76A 4L8NA 2E5LE 5A2QC 5TSEA 2WZOA 4JYAE 2EM6A 1A1KA 3DF6A 1X6EA 1ZBQA 4OOGC 2EOSA 3EPHA 1QNTA 2EPLX 2NA2A 2LE2A 2EMXA 4B3SE 1EH6A 2EMCA 1ZU1A 1PJQA 1YYOA 4JI0E 1ZBTA 1SFEA 2L8TA 4LF7E 4BCAA 4JI6E 2MC6A 2LCEA 2M7QA 2LJUA 2L3JA 2H36X 3MHSC 4NHRA 2RPCA 5A6BA 2YTDA 2D9HA 1O0WA 1T38A 4BC9A 2L6MA 2YWQA 3BF2A 1FKAE 4YY3E 4DUZE 4NXME 2YTPA 1PDAA 2RS7A 4KWYA 1TF6A 2UUCE 2EM3A 3J7Yp 4DUYE 2KHXA 2M9AA 4DV3E 2YU8A 4RHBB 2I13A 4IJDA 2EPAA 1A1LA 3ADIA 4JI3E 1XMQE 4N4RB 3H09A 2FV4B 2LUQA 1L4SA 2WBUA 1ZAAC 2EMKA 2RSIA 1HNZE 4JI2E 2EZ6A 4WSGA 2EMBA 2LV2A 1HR0E 2EM2A 2EOHA 3L00A 2JPAA 4O43A 3EPJA 1EKZA 3VK6A 2J7JA 1GQEA 2VRDA 4WXDA 4LF8E 1STUA 4DR5E 2F8BA 4NXNE 2EM0A 1UILA 2EL5A 2EPKX 3BBGA 1X48A 2G7HA 2JWOA 2YSPA 1YFHA 2JP9A 1XMOE 3THNA 2BBGA 2LTSA 2DLQA 4DV4E 1G2DC 2EMAA 4DV6E 1WRJA 2ELZA 2EQ3A 2EQ1A 1WHQA 4MLVA 4WYQB 4P7DA 4AQYE 4DMIA 5AE2A 1AH5A 1DQ3A 1GTKA 1A1HA 2B7TA 5T6JA 4F2JC 2WBSA 4WSPA 1AAYA 2ELYA 2EMHA 2L2MA 5IT9C 2N3GA 1JK1A 2EOZA 2YTFA 3KWRA 4BBYA 4DR3E 4X65E 3C6KA 2EMZA 2FTXB 2V87A 2V85A 2EQ0A 1G2FC 1WJPA 2VF1A 2LT7A 3HXLA 3P1XA 4F6NA 2ENAA 4ZYGA 4DR7E 2EOXA 1WXRA 2L2KB 2EOQA 4B3ME 2RTXA 2NUFA 1N32E 2EL6A 2EPNA 2UUBE 1N33E 1X6FA 5A69A 2DLKA 4R2PA 5KL6A 2EOJA 2LO3A 5AC4A 1X6HA 4LTYA 3UK3C 4O5GA 2EPMX 3J81C 4LF6E 4LF4E 4OX9E 1TF3A 1IMUA 4M2ZA 3QG5C 2EM8A 1IQSA 1A1GA 2DRPA 1UN6B 2EPPA 2JYAA 2EP3A 1T39A 5A6AA 2ODRC 3F6HA 4R2QA 2EN8A 4JI7E 1N34E 4GKJE 3EPKA 3IWCA 1P47A 2YT4A 4R2EA 1FJGE 4J8ZA 1YPNA 1X5WA 1Z1BA 2N3HA 2L2NA 1RMDA 2PRTA 2NUEA 3KZYA 3HPSA 2HGHA 2EN2A 2CSHA 1T4OA 2M1SA 2DIXA 2I9IA 1PJSA 1X3CA 1IQOA 4O4KA 1X49A 1I94E 1IBME 1T4NA 4WXCA 1PKPA 2MKNA 2EPCA 2MDRA 1T4LB 2ENHA 2NABA 2JVAA 3EQ1A 2MKDA 2UXBE 5KL7A 4IS1C 4LFCE 4HTGA 1J5EE 5A6JA 1NEIA 2EJ4A 4Q35B 3AV0A 2HJJA 5IXMB 2WCC3 3TQMA 3C6MA 4B3TE 4RH8A 2EL4A 2V8QB 2LVHA 1YYKA 1YUJA 3VHTB 4TUIA 1LLMC 2V88A 4O24A 3JAMC 3ADLA 4BHCA 2V86A 4LFAE 3FIGA 2IHR1 2VQFE 2V83A 2UXCE 2B3TB 2YZTA 5LLQA 4I8OA 4LU9A 1N36E 1ZR9A 1BB8A 3LMLA 4KZSA 2LTRA 4LF9E 4R03A 3ZOQB 4DKKA 4BS9A 2LUPB 5AE1A 2YTIA 4LF5E 2K4VA 3AUZA 2BB8A 3C4BA 2ODRD 3ECRA 4R2SA 3EPLA 1TN9A 2ENCA 2V89A 4F9AB 1MEYC 5AE3A 4L5NC 3K6QA 2LMZA 5KL2A 2WBTA 3HQ1A 4R2AA 1GZ6A 3BIDA 3OTOE 4B3RE 3BGHA 5A6BD 1SR9A 3JTZA 1BBOA 3T1HE 2DMIA 2HHHE 4GKKE 4BHBA 2E72A 2VE7C 4JI8E 3LLHA 2M4IA 4LFBE 2NUGA 1KYQA 2LRSA 4HEIA 1EH7A 4F54A 3HTXA 2EM7A 2LBSB 1WHNA 3VYYA 1HNXE 1YYWA 1DI2A 1PJTA 2RQLA 1IBLE 2EM4A 3IWDA 2B7VA 2YRKA 2EORA 4R8OA 2L3CA 5IV8B 3VYXA 5IWAE 4GEQB 4JI4E 2EOFA 2B9DA 2EPOA 2MC5A 2L33A 1JK2A 4DV5E 1KJKA 4DV7E 5DNYA 2YTJA 2GHFA 5KL3A 3DJWA 2ADRA 2EOYA 4KHPE 5BR8E 3M99B 2FGGA 2EN3A 3J80C 2RSMA 1YSAC 1HNWE 1J26A 1QU6A 2JOBA 5CFFE 1A1FA 4X8WA 4X64E 4JI5E 1YUIA 3MSWA 2MDGA 2JR1A 3MHHC 5F3WA 4WFTA 4WX9A 4FK5C 2R1FA 1EH8A 2YTEA 1RC7A 1UBDC 2RS6A 2EN7A 3RMPA 4DV1E 1X47A 2EMGA 3HPZA 2CPNA 1N3GA 2EMWA 1NCSA 5ADZA 4R2DA 2F4VE 2DSYA 4DV2E 2EOEA 2CTDA 4JV5E 2YSOA 4P78A 5FLXC 2EN1A 2YTGA 2L92A 5LMNE 4M0VA 2YRHA 5A6KA 2DGCA 2EOOA 4WPYA 2Q8UA 2YTQA 2DMYA 2EPXA 1A1IA 2EMIA 5LMUE 2YTOA 4BC7A 1IBKE 4M9VC 2A25A 2JY9A 4X9JA 4R2RA 1XNRE 2UU9E 2GLIA 2EE8A 2YTNA
chains in the Genus database with same CATH topology
3BIDA 2K7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BID A;  2K7I A; 
#chains in the Genus database with same CATH topology
 2ZM6 E;  2JOX A;  4X66 E;  2GPI A;  2EML A;  2EWL A;  2LJH A;  4Q28 A;  2UUA E;  1F2I G;  1B69 A;  3JU0 A;  2EMY A;  3J7A G;  2HC5 A;  4DV0 E;  4DR4 E;  4K0K E;  2KON A;  2EPZ A;  2EOI A;  4DR1 E;  2JXP A;  4YHH E;  4NZV A;  4DR6 E;  2EMF A;  5AAS A;  4M30 A;  5KL4 A;  2E1M A;  4ZYE A;  4TUG A;  3ADJ A;  1DGC A;  2CT1 A;  2EM5 A;  4JI1 E;  2YU5 A;  3ADG A;  5LL6 R;  4BMJ A;  4X62 E;  3T1Y E;  2K7I A;  1MGT A;  4DR2 E;  2DB2 A;  4F9C B;  3OML A;  4R2C A;  1A1J A;  2UXD E;  4MLQ A;  2EOM A;  3KZZ A;  1BBG A;  2N8X A;  3IWB A;  2YPN A;  2KOU A;  2VQE E;  2EN6 A;  2EPR A;  4ZYD A;  3C4T A;  4F6M A;  1YZ9 A;  3THO B;  4GZN C;  1XNQ E;  2EM9 A;  2EPU A;  2YRM A;  5AC5 A;  1RQ0 A;  4ZYH A;  4F9B B;  5KL5 A;  3F6G A;  2EN4 A;  1UHZ A;  2R76 A;  4L8N A;  2E5L E;  5A2Q C;  5TSE A;  2WZO A;  4JYA E;  2EM6 A;  1A1K A;  3DF6 A;  1X6E A;  1ZBQ A;  4OOG C;  2EOS A;  3EPH A;  1QNT A;  2EPL X;  2NA2 A;  2LE2 A;  2EMX A;  4B3S E;  1EH6 A;  2EMC A;  1ZU1 A;  1PJQ A;  1YYO A;  4JI0 E;  1ZBT A;  1SFE A;  2L8T A;  4LF7 E;  4BCA A;  4JI6 E;  2MC6 A;  2LCE A;  2M7Q A;  2LJU A;  2L3J A;  2H36 X;  3MHS C;  4NHR A;  2RPC A;  5A6B A;  2YTD A;  2D9H A;  1O0W A;  1T38 A;  4BC9 A;  2L6M A;  2YWQ A;  3BF2 A;  1FKA E;  4YY3 E;  4DUZ E;  4NXM E;  2YTP A;  1PDA A;  2RS7 A;  4KWY A;  1TF6 A;  2UUC E;  2EM3 A;  3J7Y p;  4DUY E;  2KHX A;  2M9A A;  4DV3 E;  2YU8 A;  4RHB B;  2I13 A;  4IJD A;  2EPA A;  1A1L A;  3ADI A;  4JI3 E;  1XMQ E;  4N4R B;  3H09 A;  2FV4 B;  2LUQ A;  1L4S A;  2WBU A;  1ZAA C;  2EMK A;  2RSI A;  1HNZ E;  4JI2 E;  2EZ6 A;  4WSG A;  2EMB A;  2LV2 A;  1HR0 E;  2EM2 A;  2EOH A;  3L00 A;  2JPA A;  4O43 A;  3EPJ A;  1EKZ A;  3VK6 A;  2J7J A;  1GQE A;  2VRD A;  4WXD A;  4LF8 E;  1STU A;  4DR5 E;  2F8B A;  4NXN E;  2EM0 A;  1UIL A;  2EL5 A;  2EPK X;  3BBG A;  1X48 A;  2G7H A;  2JWO A;  2YSP A;  1YFH A;  2JP9 A;  1XMO E;  3THN A;  2BBG A;  2LTS A;  2DLQ A;  4DV4 E;  1G2D C;  2EMA A;  4DV6 E;  1WRJ A;  2ELZ A;  2EQ3 A;  2EQ1 A;  1WHQ A;  4MLV A;  4WYQ B;  4P7D A;  4AQY E;  4DMI A;  5AE2 A;  1AH5 A;  1DQ3 A;  1GTK A;  1A1H A;  2B7T A;  5T6J A;  4F2J C;  2WBS A;  4WSP A;  1AAY A;  2ELY A;  2EMH A;  2L2M A;  5IT9 C;  2N3G A;  1JK1 A;  2EOZ A;  2YTF A;  3KWR A;  4BBY A;  4DR3 E;  4X65 E;  3C6K A;  2EMZ A;  2FTX B;  2V87 A;  2V85 A;  2EQ0 A;  1G2F C;  1WJP A;  2VF1 A;  2LT7 A;  3HXL A;  3P1X A;  4F6N A;  2ENA A;  4ZYG A;  4DR7 E;  2EOX A;  1WXR A;  2L2K B;  2EOQ A;  4B3M E;  2RTX A;  2NUF A;  1N32 E;  2EL6 A;  2EPN A;  2UUB E;  1N33 E;  1X6F A;  5A69 A;  2DLK A;  4R2P A;  5KL6 A;  2EOJ A;  2LO3 A;  5AC4 A;  1X6H A;  4LTY A;  3UK3 C;  4O5G A;  2EPM X;  3J81 C;  4LF6 E;  4LF4 E;  4OX9 E;  1TF3 A;  1IMU A;  4M2Z A;  3QG5 C;  2EM8 A;  1IQS A;  1A1G A;  2DRP A;  1UN6 B;  2EPP A;  2JYA A;  2EP3 A;  1T39 A;  5A6A A;  2ODR C;  3F6H A;  4R2Q A;  2EN8 A;  4JI7 E;  1N34 E;  4GKJ E;  3EPK A;  3IWC A;  1P47 A;  2YT4 A;  4R2E A;  1FJG E;  4J8Z A;  1YPN A;  1X5W A;  1Z1B A;  2N3H A;  2L2N A;  1RMD A;  2PRT A;  2NUE A;  3KZY A;  3HPS A;  2HGH A;  2EN2 A;  2CSH A;  1T4O A;  2M1S A;  2DIX A;  2I9I A;  1PJS A;  1X3C A;  1IQO A;  4O4K A;  1X49 A;  1I94 E;  1IBM E;  1T4N A;  4WXC A;  1PKP A;  2MKN A;  2EPC A;  2MDR A;  1T4L B;  2ENH A;  2NAB A;  2JVA A;  3EQ1 A;  2MKD A;  2UXB E;  5KL7 A;  4IS1 C;  4LFC E;  4HTG A;  1J5E E;  5A6J A;  1NEI A;  2EJ4 A;  4Q35 B;  3AV0 A;  2HJJ A;  5IXM B;  2WCC 3;  3TQM A;  3C6M A;  4B3T E;  4RH8 A;  2EL4 A;  2V8Q B;  2LVH A;  1YYK A;  1YUJ A;  3VHT B;  4TUI A;  1LLM C;  2V88 A;  4O24 A;  3JAM C;  3ADL A;  4BHC A;  2V86 A;  4LFA E;  3FIG A;  2IHR 1;  2VQF E;  2V83 A;  2UXC E;  2B3T B;  2YZT A;  5LLQ A;  4I8O A;  4LU9 A;  1N36 E;  1ZR9 A;  1BB8 A;  3LML A;  4KZS A;  2LTR A;  4LF9 E;  4R03 A;  3ZOQ B;  4DKK A;  4BS9 A;  2LUP B;  5AE1 A;  2YTI A;  4LF5 E;  2K4V A;  3AUZ A;  2BB8 A;  3C4B A;  2ODR D;  3ECR A;  4R2S A;  3EPL A;  1TN9 A;  2ENC A;  2V89 A;  4F9A B;  1MEY C;  5AE3 A;  4L5N C;  3K6Q A;  2LMZ A;  5KL2 A;  2WBT A;  3HQ1 A;  4R2A A;  1GZ6 A;  3BID A;  3OTO E;  4B3R E;  3BGH A;  5A6B D;  1SR9 A;  3JTZ A;  1BBO A;  3T1H E;  2DMI A;  2HHH E;  4GKK E;  4BHB A;  2E72 A;  2VE7 C;  4JI8 E;  3LLH A;  2M4I A;  4LFB E;  2NUG A;  1KYQ A;  2LRS A;  4HEI A;  1EH7 A;  4F54 A;  3HTX A;  2EM7 A;  2LBS B;  1WHN A;  3VYY A;  1HNX E;  1YYW A;  1DI2 A;  1PJT A;  2RQL A;  1IBL E;  2EM4 A;  3IWD A;  2B7V A;  2YRK A;  2EOR A;  4R8O A;  2L3C A;  5IV8 B;  3VYX A;  5IWA E;  4GEQ B;  4JI4 E;  2EOF A;  2B9D A;  2EPO A;  2MC5 A;  2L33 A;  1JK2 A;  4DV5 E;  1KJK A;  4DV7 E;  5DNY A;  2YTJ A;  2GHF A;  5KL3 A;  3DJW A;  2ADR A;  2EOY A;  4KHP E;  5BR8 E;  3M99 B;  2FGG A;  2EN3 A;  3J80 C;  2RSM A;  1YSA C;  1HNW E;  1J26 A;  1QU6 A;  2JOB A;  5CFF E;  1A1F A;  4X8W A;  4X64 E;  4JI5 E;  1YUI A;  3MSW A;  2MDG A;  2JR1 A;  3MHH C;  5F3W A;  4WFT A;  4WX9 A;  4FK5 C;  2R1F A;  1EH8 A;  2YTE A;  1RC7 A;  1UBD C;  2RS6 A;  2EN7 A;  3RMP A;  4DV1 E;  1X47 A;  2EMG A;  3HPZ A;  2CPN A;  1N3G A;  2EMW A;  1NCS A;  5ADZ A;  4R2D A;  2F4V E;  2DSY A;  4DV2 E;  2EOE A;  2CTD A;  4JV5 E;  2YSO A;  4P78 A;  5FLX C;  2EN1 A;  2YTG A;  2L92 A;  5LMN E;  4M0V A;  2YRH A;  5A6K A;  2DGC A;  2EOO A;  4WPY A;  2Q8U A;  2YTQ A;  2DMY A;  2EPX A;  1A1I A;  2EMI A;  5LMU E;  2YTO A;  4BC7 A;  1IBK E;  4M9V C;  2A25 A;  2JY9 A;  4X9J A;  4R2R A;  1XNR E;  2UU9 E;  2GLI A;  2EE8 A;  2YTN A; 
#chains in the Genus database with same CATH homology
 3BID A;  2K7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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