3BIDA

Crystal structure of the nmb1088 protein from neisseria meningitidis. northeast structural genomics consortium target mr91
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
58
structure length
58
Chain Sequence
MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLLKSTTAATPVKEVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Neisseria meningitidis mc58
publication title Crystal structure of the NMB1088 protein from Neisseria meningitidis.
rcsb
molecule keywords UPF0339 protein NMB1088
total genus 9
structure length 58
sequence length 58
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2007-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.160 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain YegP-like 3bidA01
2K7IA 3BIDA
chains in the Genus database with same CATH superfamily
2YU5A 4B3ME 2E5LE 3EPJA 1WXRA 2JOXA 4YHHE 2IHR1 4P7DA 2YRHA 3AV0A 2H36X 3QG5C 1J26A 5ADZA 4F6MA 4TUIA 4WSPA 1KJKA 4N4RB 4DR4E 4P78A 3EPKA 2EMAA 1IBLE 4WYQB 4WFTA 2UXBE 5T6JA 4R2DA 2BBGA 2LE2A 3VHTB 1IQOA 4WSGA 2JOBA 2YTFA 2EPPA 2JWOA 2L2MA 2EPOA 2EM3A 3IWCA 3IWDA 2J7JA 1YSAC 1G2FC 2HGHA 4JI2E 4IS1C 2Q8UA 3AUZA 2UUAE 4JI7E 2DSYA 1AH5A 4ZYEA 4J8ZA 4JI8E 4R2SA 1P47A 1X47A 1X3CA 2EOYA 2EMYA 2CT1A 2GLIA 2RS7A 2YTOA 3HPZA 1SFEA 5IXMB 1XNRE 4JYAE 2EM0A 2EOEA 2EMWA 4LF7E 3J7AG 3C4TA 4FK5C 3HXLA 4WXDA 1TN9A 4LF9E 3BGHA 2EPUA 4IJDA 1A1LA 5CFFE 2LUPB 1YUIA 5AE1A 2PRTA 1A1FA 4NXNE 3HQ1A 1WJPA 2EJ4A 4R03A 2EPMX 1SR9A 2E72A 2RSMA 2NUGA 2WCC3 1PJQA 5A6AA 2UUBE 3UK3C 2ODRC 1QU6A 1XNQE 1XMQE 3KWRA 2L2KB 1BBGA 4ZYGA 3ADGA 5KL4A 4GKKE 4GKJE 3LLHA 4L5NC 4R2PA 2L6MA 5A6KA 2YTIA 2RSIA 3HPSA 2NUEA 3JTZA 4GEQB 2EPRA 4R2AA 2M1SA 1PJSA 2G7HA 1I94E 4K0KE 2YZTA 2EPKX 2UUCE 4F54A 3OTOE 2L92A 3JAMC 5DNYA 2EN1A 2VE7C 1X6FA 2NABA 4KWYA 1T38A 2ENHA 1A1IA 2V89A 4LFBE 4M2ZA 2EN4A 1KYQA 3VYYA 2EORA 3DJWA 1L4SA 2LUQA 3BBGA 4WXCA 2B7VA 2EQ3A 1X6EA 2EOSA 1UHZA 2YPNA 4WX9A 2WBUA 1ZBTA 2NA2A 1WHNA 1ZBQA 1X48A 5A6BD 4AQYE 1DQ3A 2EWLA 2YTGA 5IT9C 3TQMA 2NUFA 4JI3E 1N32E 3THOB 2L2NA 4BS9A 4X64E 4BC9A 1NEIA 3THNA 4LTYA 3P1XA 4HEIA 2M4IA 2EN6A 1N34E 4OOGC 3EPLA 2EOXA 2JYAA 2DB2A 4YY3E 4DUYE 4M0VA 3MHSC 1X49A 5AASA 4DR2E 1DGCA 4F2JC 2EOHA 1GTKA 1HNWE 2ENAA 2EOOA 2EMHA 5LL6R 2EMKA 2ELYA 1YYOA 1T4OA 1YYWA 3DF6A 1UBDC 2HJJA 4LFCE 4R2QA 3H09A 2GHFA 2MDGA 5KL7A 1IBKE 2EZ6A 2YTEA 4BHBA 2DRPA 4M30A 5BR8E 4JI0E 2EL6A 4R2RA 1AAYA 2EL4A 2WZOA 1TF6A 3OMLA 2EOQA 1A1HA 2YRKA 3BF2A 2I13A 4L8NA 2N3GA 2EQ1A 4DR1E 2A25A 2FV4B 5IV8B 2RTXA 4RH8A 4O43A 2KOUA 2LV2A 4MLQA 2EPLX 5LMNE 1YYKA 2L8TA 4DR5E 4JV5E 2EMLA 2JVAA 2B3TB 2EM8A 2JXPA 3C6MA 1N36E 2UXDE 1YFHA 1RC7A 4KZSA 2M7QA 2YU8A 2EMFA 2JP9A 3F6HA 1UILA 2RPCA 4O24A 3RMPA 3KZYA 4F6NA 2MC6A 4X66E 2LVHA 4BMJA 2I9IA 4Q28A 2LBSB 5A6BA 2EN8A 2LCEA 2WBSA 4DR6E 2ENCA 1WHQA 2E1MA 4BBYA 1F2IG 1NCSA 1HNZE 2M9AA 1YUJA 2V87A 2LJUA 1A1JA 4DV6E 2MDRA 1DI2A 4WPYA 2EL5A 2EMGA 2LJHA 4LF6E 4R8OA 2ODRD 5A2QC 5A69A 1HNXE 2LRSA 4M9VC 1EH6A 2DGCA 4HTGA 2EOFA 1J5EE 1X5WA 1T4NA 2VF1A 1ZU1A 2RS6A 5FLXC 4JI4E 2EOJA 1MEYC 2F4VE 1G2DC 2EQ0A 4DR3E 2MKDA 4R2EA 4RHBB 1JK1A 2JY9A 2YTDA 4B3RE 2EN3A 2JPAA 3FIGA 5IWAE 3F6GA 1ZAAC 1STUA 2LT7A 2EN7A 4DV3E 3M99B 2EM2A 3ADIA 2DLKA 1B69A 2ADRA 1TF3A 4O4KA 3JU0A 3ADJA 2VQFE 4F9CB 3ECRA 4NHRA 1JK2A 2YT4A 4LF8E 4DKKA 5KL2A 1PJTA 2CTDA 4DV2E 2N3HA 3J80C 2L33A 4F9BB 2VRDA 2L3JA 4DUZE 4X65E 2DMYA 2YTJA 2EPZA 4JI6E 4DV1E 2ZM6E 2UXCE 1WRJA 2EMCA 2GPIA 4O5GA 1YPNA 2KONA 1GQEA 1QNTA 3KZZA 3VK6A 4I8OA 5TSEA 5AE2A 1EH7A 2EOZA 5AC5A 2VQEE 2EMXA 1X6HA 2EM7A 5KL6A 2EMIA 2K4VA 1UN6B 2RQLA 2K7IA 2HC5A 2B7TA 2YTNA 4LF4E 1PKPA 2EE8A 4X8WA 3T1YE 4OX9E 3IWBA 2EN2A 4DV7E 2DIXA 1T39A 1RQ0A 3C4BA 3C6KA 1O0WA 2YSPA 2EM4A 2R1FA 1PDAA 2V88A 4DV5E 2BB8A 4TUGA 2JR1A 4BHCA 2LTSA 2HHHE 4JI1E 4MLVA 2EM5A 2YTQA 1FKAE 2LO3A 3EPHA 4DV4E 1FJGE 1Z1BA 2EPAA 5LMUE 5F3WA 1ZR9A 2B9DA 4LU9A 2EOMA 2V85A 4JI5E 2EMZA 2EM9A 2R76A 4ZYHA 1EH8A 2F8BA 5AC4A 2V8QB 1YZ9A 2V86A 2V83A 2YSOA 2EP3A 2EPCA 4BCAA 5KL5A 4NXME 3K6QA 4DMIA 2MC5A 4DV0E 2EM6A 4LFAE 4X62E 1BB8A 1BBOA 1RMDA 2ELZA 2YTPA 3J81C 3BIDA 4GZNC 4B3SE 4F9AB 2LTRA 2UU9E 1IBME 4B3TE 4LF5E 2LMZA 2WBTA 2L3CA 4KHPE 2KHXA 2EOIA 4ZYDA 5LLQA 5A6JA 3ADLA 1IMUA 4NZVA 2DMIA 3J7Yp 3HTXA 4DR7E 2CSHA 2D9HA 2EPNA 2EMBA 1GZ6A 2MKNA 2EPXA 2FGGA 3T1HE 2YRMA 1LLMC 2CPNA 5KL3A 1A1GA 3L00A 2YWQA 1XMOE 2DLQA 5AE3A 1IQSA 1HR0E 1MGTA 1A1KA 2FTXB 1N3GA 4R2CA 3EQ1A 2N8XA 4BC7A 1EKZA 3LMLA 4Q35B 1T4LB 1N33E 4X9JA 3ZOQB 3MHHC 3VYXA 3MSWA
chains in the Genus database with same CATH topology
2K7IA 3BIDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K7I A;  3BID A; 
#chains in the Genus database with same CATH topology
 2YU5 A;  4B3M E;  2E5L E;  3EPJ A;  1WXR A;  2JOX A;  4YHH E;  2IHR 1;  4P7D A;  2YRH A;  3AV0 A;  2H36 X;  3QG5 C;  1J26 A;  5ADZ A;  4F6M A;  4TUI A;  4WSP A;  1KJK A;  4N4R B;  4DR4 E;  4P78 A;  3EPK A;  2EMA A;  1IBL E;  4WYQ B;  4WFT A;  2UXB E;  5T6J A;  4R2D A;  2BBG A;  2LE2 A;  3VHT B;  1IQO A;  4WSG A;  2JOB A;  2YTF A;  2EPP A;  2JWO A;  2L2M A;  2EPO A;  2EM3 A;  3IWC A;  3IWD A;  2J7J A;  1YSA C;  1G2F C;  2HGH A;  4JI2 E;  4IS1 C;  2Q8U A;  3AUZ A;  2UUA E;  4JI7 E;  2DSY A;  1AH5 A;  4ZYE A;  4J8Z A;  4JI8 E;  4R2S A;  1P47 A;  1X47 A;  1X3C A;  2EOY A;  2EMY A;  2CT1 A;  2GLI A;  2RS7 A;  2YTO A;  3HPZ A;  1SFE A;  5IXM B;  1XNR E;  4JYA E;  2EM0 A;  2EOE A;  2EMW A;  4LF7 E;  3J7A G;  3C4T A;  4FK5 C;  3HXL A;  4WXD A;  1TN9 A;  4LF9 E;  3BGH A;  2EPU A;  4IJD A;  1A1L A;  5CFF E;  2LUP B;  1YUI A;  5AE1 A;  2PRT A;  1A1F A;  4NXN E;  3HQ1 A;  1WJP A;  2EJ4 A;  4R03 A;  2EPM X;  1SR9 A;  2E72 A;  2RSM A;  2NUG A;  2WCC 3;  1PJQ A;  5A6A A;  2UUB E;  3UK3 C;  2ODR C;  1QU6 A;  1XNQ E;  1XMQ E;  3KWR A;  2L2K B;  1BBG A;  4ZYG A;  3ADG A;  5KL4 A;  4GKK E;  4GKJ E;  3LLH A;  4L5N C;  4R2P A;  2L6M A;  5A6K A;  2YTI A;  2RSI A;  3HPS A;  2NUE A;  3JTZ A;  4GEQ B;  2EPR A;  4R2A A;  2M1S A;  1PJS A;  2G7H A;  1I94 E;  4K0K E;  2YZT A;  2EPK X;  2UUC E;  4F54 A;  3OTO E;  2L92 A;  3JAM C;  5DNY A;  2EN1 A;  2VE7 C;  1X6F A;  2NAB A;  4KWY A;  1T38 A;  2ENH A;  1A1I A;  2V89 A;  4LFB E;  4M2Z A;  2EN4 A;  1KYQ A;  3VYY A;  2EOR A;  3DJW A;  1L4S A;  2LUQ A;  3BBG A;  4WXC A;  2B7V A;  2EQ3 A;  1X6E A;  2EOS A;  1UHZ A;  2YPN A;  4WX9 A;  2WBU A;  1ZBT A;  2NA2 A;  1WHN A;  1ZBQ A;  1X48 A;  5A6B D;  4AQY E;  1DQ3 A;  2EWL A;  2YTG A;  5IT9 C;  3TQM A;  2NUF A;  4JI3 E;  1N32 E;  3THO B;  2L2N A;  4BS9 A;  4X64 E;  4BC9 A;  1NEI A;  3THN A;  4LTY A;  3P1X A;  4HEI A;  2M4I A;  2EN6 A;  1N34 E;  4OOG C;  3EPL A;  2EOX A;  2JYA A;  2DB2 A;  4YY3 E;  4DUY E;  4M0V A;  3MHS C;  1X49 A;  5AAS A;  4DR2 E;  1DGC A;  4F2J C;  2EOH A;  1GTK A;  1HNW E;  2ENA A;  2EOO A;  2EMH A;  5LL6 R;  2EMK A;  2ELY A;  1YYO A;  1T4O A;  1YYW A;  3DF6 A;  1UBD C;  2HJJ A;  4LFC E;  4R2Q A;  3H09 A;  2GHF A;  2MDG A;  5KL7 A;  1IBK E;  2EZ6 A;  2YTE A;  4BHB A;  2DRP A;  4M30 A;  5BR8 E;  4JI0 E;  2EL6 A;  4R2R A;  1AAY A;  2EL4 A;  2WZO A;  1TF6 A;  3OML A;  2EOQ A;  1A1H A;  2YRK A;  3BF2 A;  2I13 A;  4L8N A;  2N3G A;  2EQ1 A;  4DR1 E;  2A25 A;  2FV4 B;  5IV8 B;  2RTX A;  4RH8 A;  4O43 A;  2KOU A;  2LV2 A;  4MLQ A;  2EPL X;  5LMN E;  1YYK A;  2L8T A;  4DR5 E;  4JV5 E;  2EML A;  2JVA A;  2B3T B;  2EM8 A;  2JXP A;  3C6M A;  1N36 E;  2UXD E;  1YFH A;  1RC7 A;  4KZS A;  2M7Q A;  2YU8 A;  2EMF A;  2JP9 A;  3F6H A;  1UIL A;  2RPC A;  4O24 A;  3RMP A;  3KZY A;  4F6N A;  2MC6 A;  4X66 E;  2LVH A;  4BMJ A;  2I9I A;  4Q28 A;  2LBS B;  5A6B A;  2EN8 A;  2LCE A;  2WBS A;  4DR6 E;  2ENC A;  1WHQ A;  2E1M A;  4BBY A;  1F2I G;  1NCS A;  1HNZ E;  2M9A A;  1YUJ A;  2V87 A;  2LJU A;  1A1J A;  4DV6 E;  2MDR A;  1DI2 A;  4WPY A;  2EL5 A;  2EMG A;  2LJH A;  4LF6 E;  4R8O A;  2ODR D;  5A2Q C;  5A69 A;  1HNX E;  2LRS A;  4M9V C;  1EH6 A;  2DGC A;  4HTG A;  2EOF A;  1J5E E;  1X5W A;  1T4N A;  2VF1 A;  1ZU1 A;  2RS6 A;  5FLX C;  4JI4 E;  2EOJ A;  1MEY C;  2F4V E;  1G2D C;  2EQ0 A;  4DR3 E;  2MKD A;  4R2E A;  4RHB B;  1JK1 A;  2JY9 A;  2YTD A;  4B3R E;  2EN3 A;  2JPA A;  3FIG A;  5IWA E;  3F6G A;  1ZAA C;  1STU A;  2LT7 A;  2EN7 A;  4DV3 E;  3M99 B;  2EM2 A;  3ADI A;  2DLK A;  1B69 A;  2ADR A;  1TF3 A;  4O4K A;  3JU0 A;  3ADJ A;  2VQF E;  4F9C B;  3ECR A;  4NHR A;  1JK2 A;  2YT4 A;  4LF8 E;  4DKK A;  5KL2 A;  1PJT A;  2CTD A;  4DV2 E;  2N3H A;  3J80 C;  2L33 A;  4F9B B;  2VRD A;  2L3J A;  4DUZ E;  4X65 E;  2DMY A;  2YTJ A;  2EPZ A;  4JI6 E;  4DV1 E;  2ZM6 E;  2UXC E;  1WRJ A;  2EMC A;  2GPI A;  4O5G A;  1YPN A;  2KON A;  1GQE A;  1QNT A;  3KZZ A;  3VK6 A;  4I8O A;  5TSE A;  5AE2 A;  1EH7 A;  2EOZ A;  5AC5 A;  2VQE E;  2EMX A;  1X6H A;  2EM7 A;  5KL6 A;  2EMI A;  2K4V A;  1UN6 B;  2RQL A;  2K7I A;  2HC5 A;  2B7T A;  2YTN A;  4LF4 E;  1PKP A;  2EE8 A;  4X8W A;  3T1Y E;  4OX9 E;  3IWB A;  2EN2 A;  4DV7 E;  2DIX A;  1T39 A;  1RQ0 A;  3C4B A;  3C6K A;  1O0W A;  2YSP A;  2EM4 A;  2R1F A;  1PDA A;  2V88 A;  4DV5 E;  2BB8 A;  4TUG A;  2JR1 A;  4BHC A;  2LTS A;  2HHH E;  4JI1 E;  4MLV A;  2EM5 A;  2YTQ A;  1FKA E;  2LO3 A;  3EPH A;  4DV4 E;  1FJG E;  1Z1B A;  2EPA A;  5LMU E;  5F3W A;  1ZR9 A;  2B9D A;  4LU9 A;  2EOM A;  2V85 A;  4JI5 E;  2EMZ A;  2EM9 A;  2R76 A;  4ZYH A;  1EH8 A;  2F8B A;  5AC4 A;  2V8Q B;  1YZ9 A;  2V86 A;  2V83 A;  2YSO A;  2EP3 A;  2EPC A;  4BCA A;  5KL5 A;  4NXM E;  3K6Q A;  4DMI A;  2MC5 A;  4DV0 E;  2EM6 A;  4LFA E;  4X62 E;  1BB8 A;  1BBO A;  1RMD A;  2ELZ A;  2YTP A;  3J81 C;  3BID A;  4GZN C;  4B3S E;  4F9A B;  2LTR A;  2UU9 E;  1IBM E;  4B3T E;  4LF5 E;  2LMZ A;  2WBT A;  2L3C A;  4KHP E;  2KHX A;  2EOI A;  4ZYD A;  5LLQ A;  5A6J A;  3ADL A;  1IMU A;  4NZV A;  2DMI A;  3J7Y p;  3HTX A;  4DR7 E;  2CSH A;  2D9H A;  2EPN A;  2EMB A;  1GZ6 A;  2MKN A;  2EPX A;  2FGG A;  3T1H E;  2YRM A;  1LLM C;  2CPN A;  5KL3 A;  1A1G A;  3L00 A;  2YWQ A;  1XMO E;  2DLQ A;  5AE3 A;  1IQS A;  1HR0 E;  1MGT A;  1A1K A;  2FTX B;  1N3G A;  4R2C A;  3EQ1 A;  2N8X A;  4BC7 A;  1EKZ A;  3LML A;  4Q35 B;  1T4L B;  1N33 E;  4X9J A;  3ZOQ B;  3MHH C;  3VYX A;  3MSW A; 
#chains in the Genus database with same CATH homology
 2K7I A;  3BID A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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