The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
13
|
sequence length |
60
|
structure length |
60
|
Chain Sequence |
STKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLAD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein
|
| source organism |
Homo sapiens
|
| publication title |
Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and Nucleic Acids.
pubmed doi rcsb |
| molecule keywords |
Zinc finger protein 346
|
| total genus |
13
|
| structure length |
60
|
| sequence length |
60
|
| ec nomenclature | |
| pdb deposition date | 2014-02-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12874 | zf-met | Zinc-finger of C2H2 type |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger |
#chains in the Genus database with same CATH superfamily 4M9V C; 2CTD A; 4X9J A; 2EPU A; 1X6E A; 2EP3 A; 2A25 A; 2EMH A; 2ENH A; 2YTI A; 3EPJ A; 2EN3 A; 2VRD A; 3MHH C; 2EN2 A; 2GHF A; 5KL5 A; 2WCC 3; 1KJK A; 5KL4 A; 2NAB A; 1Z1B A; 5KL7 A; 2YRM A; 2GLI A; 1A1I A; 2EM9 A; 2EM0 A; 4F2J C; 1A1K A; 2EPX A; 2YTE A; 2EOZ A; 2YTF A; 2EOJ A; 3VHT B; 2ELZ A; 2EMW A; 2EN4 A; 2EML A; 2EL4 A; 2EOX A; 2YSO A; 2YTD A; 4R2C A; 2ADR A; 2ENA A; 3M99 B; 2YTG A; 2YRH A; 5KL3 A; 1UN6 B; 2J7J A; 4FK5 C; 2EE8 A; 2WBS A; 1BB8 A; 2EM7 A; 2EOF A; 2EOH A; 2I13 A; 2EJ4 A; 2LCE A; 4R2E A; 2YTP A; 1B69 A; 2EOQ A; 1A1H A; 2YU8 A; 2EPZ A; 2ELY A; 2EMZ A; 2EOO A; 2EN8 A; 2RSI A; 2PRT A; 1ZAA C; 2YU5 A; 2EPR A; 4R2Q A; 4R2D A; 1X3C A; 2EPP A; 1P47 A; 2EM2 A; 2EMY A; 1F2I G; 2E72 A; 1A1G A; 2EM8 A; 3EPL A; 1A1J A; 1JK1 A; 2EL5 A; 1ZR9 A; 2EOR A; 1G2D C; 4WSG A; 1WJP A; 2EMK A; 2YTN A; 2YSP A; 2EPA A; 2M9A A; 2HGH A; 2EM6 A; 2LO3 A; 1TF3 A; 2DMI A; 2EN1 A; 4F6M A; 2CT1 A; 2EM3 A; 2EOI A; 2WBT A; 2YRK A; 2YTJ A; 2EOM A; 1TF6 A; 2WBU A; 2MKD A; 3EPH A; 1A1F A; 2EQ3 A; 2EOS A; 2EOY A; 4GZN C; 2R1F A; 2JPA A; 2DGC A; 2LVH A; 2EMB A; 3EPK A; 5KL6 A; 2JP9 A; 1YSA C; 4R2A A; 1X6H A; 2EMI A; 1A1L A; 2YTO A; 2LV2 A; 2MKN A; 1RMD A; 2EMX A; 4R2R A; 2EMC A; 1X5W A; 1YUI A; 2EM4 A; 2EPC A; 2CSH A; 2EQ0 A; 1LLM C; 2ENC A; 1BBO A; 1DGC A; 1X6F A; 2DRP A; 4IS1 C; 2D9H A; 5KL2 A; 4R2P A; 2MDG A; 2DLK A; 2YTQ A; 1JK2 A; 2EMF A; 2DLQ A; 1AAY A; 1UBD C; 1NCS A; 2EN6 A; 2EMG A; 2EQ1 A; 3UK3 C; 1ZU1 A; 1G2F C; 1TN9 A; 2BB8 A; 2EOE A; 2EN7 A; 2EM5 A; 2RPC A; 2LT7 A; 2EMA A; 4R2S A; 4IJD A; 1YUJ A; 4F6N A; 3MHS C; 2EL6 A; 1MEY C; #chains in the Genus database with same CATH topology 4M9V C; 4B3S E; 2EP3 A; 3F6G A; 3KZY A; 2EMH A; 2ENH A; 2B9D A; 1L4S A; 4BHB A; 3MHH C; 2WCC 3; 1KJK A; 5IWA E; 2V88 A; 4B3M E; 2F8B A; 4LF9 E; 2NAB A; 3HPS A; 2M7Q A; 4R03 A; 1PKP A; 2YRM A; 3FIG A; 1EKZ A; 4RH8 A; 4GKK E; 5LLQ A; 1A1K A; 4WSP A; 1IBK E; 4NHR A; 2YTE A; 1IBM E; 1QNT A; 2MC5 A; 2ELZ A; 2EMW A; 2G7H A; 3THN A; 3JTZ A; 4WYQ B; 4DUY E; 2ENA A; 2LRS A; 2YTG A; 4Q28 A; 2WZO A; 1UN6 B; 4FK5 C; 2EE8 A; 5A6J A; 2EOH A; 3OTO E; 1PJT A; 1IQS A; 2YU8 A; 3ADL A; 2EN8 A; 2ZM6 E; 5LMN E; 2Q8U A; 4ZYG A; 1X3C A; 4F9B B; 5LMU E; 4LF8 E; 2RTX A; 1J5E E; 2EM8 A; 1A1J A; 4WX9 A; 4AQY E; 4JI8 E; 2LJH A; 5FLX C; 2LTR A; 1WJP A; 2L92 A; 2JXP A; 2YTN A; 2EPA A; 4MLQ A; 2L2K B; 4ZYH A; 4X66 E; 2L2N A; 1TF3 A; 2DMI A; 1SR9 A; 2UUB E; 2UXD E; 4F6M A; 4DV6 E; 4M0V A; 2WBT A; 2KHX A; 1MGT A; 1HNZ E; 2EPL X; 1T4N A; 3LLH A; 1A1F A; 2EOS A; 2R1F A; 1GZ6 A; 4DV5 E; 1XMO E; 2DB2 A; 2K7I A; 2VF1 A; 5KL6 A; 2JP9 A; 2UU9 E; 4LFB E; 1HNX E; 1GQE A; 4BMJ A; 4BC9 A; 2DIX A; 2MKN A; 4M2Z A; 3VK6 A; 2HJJ A; 2MC6 A; 1YYK A; 1YUI A; 3JAM C; 1T4L B; 1X49 A; 1J26 A; 1BBO A; 4LFA E; 3VYY A; 2DRP A; 2L2M A; 4F54 A; 1AH5 A; 4F9C B; 2MDG A; 3J7A G; 2DLQ A; 1AAY A; 2E5L E; 1UBD C; 2EMG A; 2DMY A; 2EN7 A; 2LMZ A; 2RPC A; 1YUJ A; 2UUA E; 2CTD A; 2EPU A; 1N32 E; 2JR1 A; 1O0W A; 2A25 A; 3EPJ A; 2VRD A; 1IBL E; 5CFF E; 5IXM B; 5KL7 A; 1FKA E; 3ADG A; 2EM0 A; 4F2J C; 2YPN A; 5AC4 A; 2EPX A; 3QG5 C; 2EOZ A; 3HXL A; 2EOJ A; 1X48 A; 4GEQ B; 1HNW E; 4HEI A; 3BID A; 2EOX A; 2YSO A; 2BBG A; 5KL3 A; 2N3G A; 3AUZ A; 2J7J A; 1BB8 A; 2LCE A; 4O24 A; 4R2E A; 2VQE E; 2EOQ A; 4DKK A; 1A1H A; 2B7T A; 2EPZ A; 2ODR D; 2ELY A; 2EMZ A; 2RSI A; 3K6Q A; 2PRT A; 2YU5 A; 4X65 E; 2EPR A; 4R2Q A; 4R2D A; 1P47 A; 4X62 E; 2EM2 A; 2DSY A; 2RS7 A; 1F2I G; 4DV4 E; 3J80 C; 1UHZ A; 1YYO A; 2V8Q B; 4YY3 E; 1XNR E; 2EL5 A; 1ZR9 A; 2EOR A; 2V87 A; 1T38 A; 1N34 E; 5AE3 A; 4JI1 E; 5A6B A; 4DR6 E; 2V86 A; 3THO B; 2YRK A; 4OX9 E; 2YTJ A; 3LML A; 1DQ3 A; 2EOM A; 2LJU A; 3C6K A; 2WBU A; 1IMU A; 2EOY A; 2EPN A; 3AV0 A; 2NUF A; 2B7V A; 2LVH A; 1XMQ E; 2YZT A; 4Q35 B; 2RQL A; 4MLV A; 1X6H A; 2EMI A; 2L6M A; 2CPN A; 3IWC A; 2YTO A; 3IWB A; 4TUI A; 4BC7 A; 3H09 A; 2LV2 A; 4JI7 E; 2HHH E; 1XNQ E; 1FJG E; 2EMX A; 4R2R A; 2EMC A; 4DV2 E; 2EM4 A; 2JYA A; 4O5G A; 2L8T A; 2ENC A; 4X64 E; 1X6F A; 5ADZ A; 5KL2 A; 2R76 A; 1N33 E; 2RSM A; 3ZOQ B; 3DJW A; 4O43 A; 2FGG A; 2GPI A; 2V83 A; 1G2F C; 1TN9 A; 4NZV A; 2EOE A; 2EMA A; 4R2S A; 4O4K A; 4IJD A; 3T1Y E; 4DR5 E; 3MHS C; 1PDA A; 2EL6 A; 2H36 X; 1MEY C; 4X9J A; 1X6E A; 2EN3 A; 2EN2 A; 2GHF A; 5KL5 A; 4TUG A; 1WHQ A; 5KL4 A; 2UUC E; 4JI6 E; 1DI2 A; 5IV8 B; 4ZYE A; 2GLI A; 4DV1 E; 2EM9 A; 1A1I A; 4JYA E; 4LF4 E; 4J8Z A; 3VHT B; 2EML A; 2EL4 A; 2E1M A; 4K0K E; 3BF2 A; 4R2C A; 2EPM X; 4WFT A; 4DUZ E; 4I8O A; 4DMI A; 3J81 C; 4DR7 E; 4X8W A; 2EM7 A; 2EOF A; 2EJ4 A; 3HTX A; 2KON A; 2YT4 A; 4M30 A; 1WRJ A; 3F6H A; 4DR1 E; 2LBS B; 3IWD A; 2VE7 C; 1HR0 E; 3C4T A; 2E72 A; 1A1G A; 1YPN A; 4KHP E; 1IQO A; 1I94 E; 2B3T B; 2V89 A; 3EPL A; 4GKJ E; 3JU0 A; 1JK1 A; 2LUP B; 1G2D C; 3KZZ A; 4WSG A; 5A69 A; 2K4V A; 1KYQ A; 1T39 A; 2HGH A; 3MSW A; 4B3R E; 1RQ0 A; 2FTX B; 2HC5 A; 2CT1 A; 1UIL A; 2V85 A; 3BGH A; 2M4I A; 1TF6 A; 4WXC A; 2KOU A; 4LFC E; 2N8X A; 2EQ3 A; 4GZN C; 4JV5 E; 3ADJ A; 5DNY A; 2DGC A; 2EMB A; 4B3T E; 4R2A A; 1A1L A; 5TSE A; 4NXM E; 4ZYD A; 1YZ9 A; 1T4O A; 4P7D A; 1RMD A; 1EH6 A; 4L5N C; 3HPZ A; 5AE1 A; 4LF6 E; 1EH8 A; 5AAS A; 4BBY A; 2F4V E; 2D9H A; 2YTQ A; 2DLK A; 2EMF A; 4WXD A; 1NCS A; 2ODR C; 2EN6 A; 4JI0 E; 1ZU1 A; 2LT7 A; 3J7Y p; 1NEI A; 4F6N A; 1ZBQ A; 3TQM A; 2EPK X; 2I9I A; 4JI2 E; 1PJQ A; 2YWQ A; 4P78 A; 4JI3 E; 4DR4 E; 2YTI A; 3EQ1 A; 4LF5 E; 5A2Q C; 1Z1B A; 2JOB A; 5F3W A; 1N36 E; 2EPO A; 2L3J A; 4R8O A; 4WPY A; 2VQF E; 3ECR A; 5A6A A; 2IHR 1; 3DF6 A; 4LF7 E; 2YTF A; 3HQ1 A; 2UXC E; 3P1X A; 1QU6 A; 2EWL A; 2EN4 A; 2YTD A; 2ADR A; 3M99 B; 2NUE A; 2YRH A; 4JI5 E; 2M1S A; 2L33 A; 2WBS A; 5AC5 A; 2I13 A; 1BBG A; 3OML A; 2NA2 A; 1STU A; 2YTP A; 2LTS A; 3RMP A; 1B69 A; 5BR8 E; 5AE2 A; 4LU9 A; 3C6M A; 2EOO A; 1EH7 A; 1ZAA C; 1WHN A; 2N3H A; 2EPP A; 1SFE A; 2EMY A; 3BBG A; 5A6K A; 4L8N A; 4N4R B; 5T6J A; 4DR3 E; 1N3G A; 5IT9 C; 4BS9 A; 4DV3 E; 2MDR A; 5A6B D; 2EMK A; 1GTK A; 2YSP A; 2M9A A; 2EM6 A; 2LO3 A; 2JOX A; 4BHC A; 2EN1 A; 2UXB E; 4NXN E; 1RC7 A; 1WXR A; 2EM3 A; 4HTG A; 2EOI A; 3KWR A; 4F9A B; 2EZ6 A; 1PJS A; 2MKD A; 4BCA A; 3EPH A; 4KWY A; 4RHB B; 2JPA A; 4OOG C; 3EPK A; 1YSA C; 3L00 A; 3VYX A; 5LL6 R; 4KZS A; 4YHH E; 3ADI A; 1ZBT A; 2JY9 A; 1X5W A; 2JWO A; 2JVA A; 2EPC A; 2CSH A; 2EQ0 A; 1LLM C; 1X47 A; 1DGC A; 1YYW A; 4DV7 E; 4IS1 C; 4R2P A; 1YFH A; 1JK2 A; 2LE2 A; 3T1H E; 2L3C A; 2EQ1 A; 3UK3 C; 4DV0 E; 4DR2 E; 2BB8 A; 2FV4 B; 3C4B A; 4JI4 E; 2EM5 A; 4LTY A; 2NUG A; 2LUQ A; 2RS6 A; #chains in the Genus database with same CATH homology 4M9V C; 2CTD A; 4X9J A; 2EPU A; 1X6E A; 2EP3 A; 2A25 A; 2EMH A; 2ENH A; 2YTI A; 3EPJ A; 2EN3 A; 2VRD A; 3MHH C; 2EN2 A; 2GHF A; 5KL5 A; 2WCC 3; 1KJK A; 5KL4 A; 2NAB A; 1Z1B A; 5KL7 A; 2YRM A; 2GLI A; 1A1I A; 2EM9 A; 2EM0 A; 4F2J C; 1A1K A; 2EPX A; 2YTE A; 2EOZ A; 2YTF A; 2EOJ A; 3VHT B; 2ELZ A; 2EMW A; 2EN4 A; 2EML A; 2EL4 A; 2EOX A; 2YSO A; 2YTD A; 4R2C A; 2ADR A; 2ENA A; 3M99 B; 2YTG A; 2YRH A; 5KL3 A; 1UN6 B; 2J7J A; 4FK5 C; 2EE8 A; 2WBS A; 1BB8 A; 2EM7 A; 2EOF A; 2EOH A; 2I13 A; 2EJ4 A; 2LCE A; 4R2E A; 2YTP A; 1B69 A; 2EOQ A; 1A1H A; 2YU8 A; 2EPZ A; 2ELY A; 2EMZ A; 2EOO A; 2EN8 A; 2RSI A; 2PRT A; 1ZAA C; 2YU5 A; 2EPR A; 4R2Q A; 4R2D A; 1X3C A; 2EPP A; 1P47 A; 2EM2 A; 2EMY A; 1F2I G; 2E72 A; 1A1G A; 2EM8 A; 3EPL A; 1A1J A; 1JK1 A; 2EL5 A; 1ZR9 A; 2EOR A; 1G2D C; 4WSG A; 1WJP A; 2EMK A; 2YTN A; 2YSP A; 2EPA A; 2M9A A; 2HGH A; 2EM6 A; 2LO3 A; 1TF3 A; 2DMI A; 2EN1 A; 4F6M A; 2CT1 A; 2EM3 A; 2EOI A; 2WBT A; 2YRK A; 2YTJ A; 2EOM A; 1TF6 A; 2WBU A; 2MKD A; 3EPH A; 1A1F A; 2EQ3 A; 2EOS A; 2EOY A; 4GZN C; 2R1F A; 2JPA A; 2DGC A; 2LVH A; 2EMB A; 3EPK A; 5KL6 A; 2JP9 A; 1YSA C; 4R2A A; 1X6H A; 2EMI A; 1A1L A; 2YTO A; 2LV2 A; 2MKN A; 1RMD A; 2EMX A; 4R2R A; 2EMC A; 1X5W A; 1YUI A; 2EM4 A; 2EPC A; 2CSH A; 2EQ0 A; 1LLM C; 2ENC A; 1BBO A; 1DGC A; 1X6F A; 2DRP A; 4IS1 C; 2D9H A; 5KL2 A; 4R2P A; 2MDG A; 2DLK A; 2YTQ A; 1JK2 A; 2EMF A; 2DLQ A; 1AAY A; 1UBD C; 1NCS A; 2EN6 A; 2EMG A; 2EQ1 A; 3UK3 C; 1ZU1 A; 1G2F C; 1TN9 A; 2BB8 A; 2EOE A; 2EN7 A; 2EM5 A; 2RPC A; 2LT7 A; 2EMA A; 4R2S A; 4IJD A; 1YUJ A; 4F6N A; 3MHS C; 2EL6 A; 1MEY C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
