The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
59
|
structure length |
59
|
Chain Sequence |
ANENILKLKLYRSLGVILDLENDQVLINRKNDGNIDILPLDNNLSDFYKTKYIWERLGK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Atomic Structure of the kinetochore Spc24p/Spc25p globular domain reveals a novel fold
rcsb |
molecule tags |
Structural protein, protein binding
|
source organism |
Saccharomyces cerevisiae
|
molecule keywords |
Hypothetical 25.2 kDa protein in AFG3-SEB2 intergenic region
|
total genus |
15
|
structure length |
59
|
sequence length |
59
|
ec nomenclature | |
pdb deposition date | 2006-01-25 |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain |
#chains in the Genus database with same CATH superfamily 2FTX B; 5T6J A; 4GEQ B; 2FV4 B; #chains in the Genus database with same CATH topology 2DGC A; 2UUA E; 2BB8 A; 2YTO A; 1WXR A; 2V86 A; 3VYX A; 2EM8 A; 4X62 E; 2EMZ A; 3C6K A; 5AE3 A; 2EL6 A; 4GEQ B; 2EOZ A; 4F9A B; 2YTD A; 2GLI A; 4R8O A; 4M0V A; 2EN2 A; 4KZS A; 4Q35 B; 3QG5 C; 2I9I A; 4ZYE A; 4JV5 E; 2V85 A; 2ZM6 E; 2YTE A; 2LUQ A; 4LTY A; 4ZYH A; 1N34 E; 1WJP A; 1A1G A; 2YTP A; 4DUY E; 4TUG A; 4BHB A; 4NXN E; 2CTD A; 2EM9 A; 4BCA A; 2HJJ A; 3HPS A; 1WHN A; 2H36 X; 4WFT A; 1MEY C; 3L00 A; 5A6J A; 4WPY A; 2K7I A; 5T6J A; 1JK2 A; 1X6H A; 4DUZ E; 3IWB A; 4DR7 E; 4J8Z A; 2EM0 A; 3IWC A; 3C6M A; 2WBS A; 1UBD C; 3J80 C; 2ODR D; 2V8Q B; 3LML A; 2RTX A; 3EQ1 A; 2MKD A; 2EM2 A; 2VE7 C; 3DF6 A; 3C4B A; 5AE2 A; 4GZN C; 3ADI A; 2YU5 A; 2R76 A; 3ADG A; 4LFC E; 2YTN A; 2CSH A; 2ENC A; 1XNR E; 2EPL X; 1XNQ E; 2EZ6 A; 3MHS C; 4WXD A; 2V87 A; 3EPK A; 2B9D A; 1HNW E; 2EM3 A; 2JR1 A; 4HTG A; 3HXL A; 4X65 E; 2N3G A; 1RC7 A; 1N32 E; 4X9J A; 4JYA E; 4DV1 E; 1N33 E; 2YPN A; 2DMY A; 2V88 A; 2GHF A; 2IHR 1; 1YSA C; 1YPN A; 2EM5 A; 2E72 A; 2EQ1 A; 2EOY A; 2E1M A; 4IS1 C; 2HHH E; 4B3S E; 1O0W A; 2EMK A; 4P7D A; 2KHX A; 3THO B; 1ZBQ A; 2EPU A; 2JOB A; 2JYA A; 2RS7 A; 2V89 A; 3JTZ A; 2EQ3 A; 5BR8 E; 1B69 A; 2CT1 A; 2EOH A; 2LE2 A; 4BBY A; 3RMP A; 2EOX A; 1UHZ A; 2WCC 3; 2EPZ A; 2E5L E; 1RQ0 A; 1WHQ A; 2UXC E; 1HNZ E; 2L6M A; 2DSY A; 1PJS A; 4LF4 E; 4ZYG A; 1A1H A; 1UN6 B; 2M4I A; 1ZAA C; 4LF7 E; 2KOU A; 1X3C A; 4O5G A; 2PRT A; 2EN7 A; 1DGC A; 2N8X A; 2RSM A; 4WXC A; 5IXM B; 3ZOQ B; 5CFF E; 2EOS A; 2YTI A; 2WBU A; 4LF6 E; 3VK6 A; 5KL4 A; 1T39 A; 1LLM C; 2EOQ A; 5KL5 A; 3C4T A; 2EOO A; 2EMA A; 2EOR A; 4NZV A; 2EN8 A; 1SR9 A; 2EPX A; 2LJH A; 2RPC A; 1EH7 A; 2L92 A; 4DV0 E; 3T1H E; 2LO3 A; 2R1F A; 5IWA E; 1X47 A; 1AAY A; 3BBG A; 4F54 A; 1T4N A; 2B3T B; 3BGH A; 1GTK A; 4F6N A; 2EMH A; 1PJQ A; 2YTF A; 1L4S A; 4BS9 A; 1ZR9 A; 3BID A; 2EML A; 2L33 A; 1PDA A; 2M9A A; 1GZ6 A; 2D9H A; 5A6B A; 2WZO A; 2F8B A; 4GKJ E; 3KZY A; 4JI6 E; 3DJW A; 5AAS A; 4LF8 E; 1EH6 A; 4R2A A; 3J81 C; 4R2C A; 3KWR A; 1J5E E; 2EN6 A; 3ADL A; 2EMW A; 5AC5 A; 4F9B B; 3KZZ A; 2ODR C; 3BF2 A; 1TN9 A; 1ZBT A; 2EP3 A; 2DLK A; 2LRS A; 2L3J A; 2EMF A; 2NAB A; 3VYY A; 4DKK A; 1DQ3 A; 3VHT B; 2V83 A; 4N4R B; 2L2K B; 4F6M A; 3AUZ A; 4LFB E; 4YY3 E; 2LUP B; 1HNX E; 2LVH A; 2MKN A; 3J7A G; 2LJU A; 1UIL A; 5TSE A; 4WSG A; 2EN3 A; 4X64 E; 4GKK E; 1A1J A; 2B7V A; 4Q28 A; 2GPI A; 1IBM E; 2BBG A; 3AV0 A; 4DV5 E; 4KWY A; 2EPA A; 1X6F A; 1XMQ E; 1X6E A; 4O4K A; 3ADJ A; 3EPL A; 2N3H A; 2YSO A; 2YWQ A; 4R2E A; 1NCS A; 4JI7 E; 4LF5 E; 2B7T A; 4DR6 E; 2UUB E; 1YUJ A; 2EMY A; 4WSP A; 1G2F C; 1T4L B; 3HQ1 A; 2EPN A; 3MHH C; 3EPH A; 4WYQ B; 5KL3 A; 2DB2 A; 1QNT A; 2DMI A; 4K0K E; 1YYO A; 2EPP A; 5IV8 B; 1PJT A; 2EPR A; 3M99 B; 4JI3 E; 2YT4 A; 2LBS B; 1X48 A; 4RH8 A; 1HR0 E; 4X8W A; 3JAM C; 5A6A A; 3EPJ A; 5KL6 A; 4TUI A; 1YFH A; 5FLX C; 1T4O A; 4JI5 E; 2JPA A; 2DLQ A; 2L2N A; 4JI1 E; 1PKP A; 2NUG A; 1F2I G; 1YUI A; 3HPZ A; 4NXM E; 1XMO E; 1AH5 A; 2MC6 A; 2RS6 A; 5IT9 C; 3TQM A; 2HC5 A; 4WX9 A; 4AQY E; 4L8N A; 2YRH A; 1STU A; 4F9C B; 5LL6 R; 1FJG E; 2UXD E; 2J7J A; 2EM6 A; 4DV6 E; 2LCE A; 4R2P A; 3J7Y p; 2M7Q A; 4DV4 E; 1IQS A; 2ADR A; 2JOX A; 3HTX A; 2EMG A; 5A2Q C; 4HEI A; 3K6Q A; 2CPN A; 4R03 A; 3IWD A; 2KON A; 5LLQ A; 4L5N C; 3T1Y E; 2JWO A; 4OX9 E; 2F4V E; 3JU0 A; 2L2M A; 4R2R A; 2JXP A; 2JVA A; 4O24 A; 2LTR A; 1IMU A; 2FTX B; 3LLH A; 1I94 E; 2MDR A; 4MLV A; 4M30 A; 2EPO A; 1TF3 A; 1N36 E; 1DI2 A; 4BMJ A; 1YYK A; 2EMX A; 2RSI A; 4KHP E; 4DR2 E; 4I8O A; 2Q8U A; 2EMB A; 2YRK A; 4JI8 E; 5ADZ A; 2EL4 A; 4B3M E; 1T38 A; 4R2S A; 1BB8 A; 2JY9 A; 4DV2 E; 1SFE A; 2DRP A; 4JI0 E; 2ELZ A; 5KL7 A; 1WRJ A; 2LT7 A; 2I13 A; 2EPK X; 1P47 A; 4P78 A; 4BC7 A; 1JK1 A; 1A1K A; 2EMI A; 2EQ0 A; 2EE8 A; 4O43 A; 1IBL E; 2M1S A; 2YTG A; 2MDG A; 4X66 E; 4RHB B; 1FKA E; 2EJ4 A; 5AE1 A; 2ENH A; 2LV2 A; 1J26 A; 4F2J C; 1BBG A; 4R2D A; 3P1X A; 1BBO A; 5A6B D; 2WBT A; 4BC9 A; 3UK3 C; 1QU6 A; 2EOM A; 2MC5 A; 3H09 A; 4DV7 E; 2EOI A; 2ELY A; 2YSP A; 4OOG C; 2K4V A; 2YU8 A; 3F6G A; 4M2Z A; 4FK5 C; 2EOE A; 1G2D C; 1EH8 A; 1N3G A; 3OTO E; 4DR3 E; 2L8T A; 2YRM A; 2NA2 A; 4ZYD A; 2LTS A; 4B3R E; 1MGT A; 2EN4 A; 2EOJ A; 1YZ9 A; 4YHH E; 2VF1 A; 2EM4 A; 2UU9 E; 4DR5 E; 1EKZ A; 2NUF A; 4DMI A; 2L3C A; 5LMU E; 4JI2 E; 5KL2 A; 1Z1B A; 2NUE A; 2G7H A; 4NHR A; 3THN A; 1KJK A; 2EPC A; 4DR1 E; 4LF9 E; 1RMD A; 2RQL A; 4M9V C; 4JI4 E; 3OML A; 4DV3 E; 1X49 A; 4LU9 A; 1X5W A; 5DNY A; 2UUC E; 2JP9 A; 2EOF A; 2YZT A; 2VQF E; 1ZU1 A; 4B3T E; 3MSW A; 4MLQ A; 5A69 A; 2VQE E; 2FGG A; 2EN1 A; 4R2Q A; 1TF6 A; 3FIG A; 3F6H A; 5LMN E; 2EM7 A; 1A1I A; 1A1F A; 2A25 A; 1IQO A; 5F3W A; 4BHC A; 4LFA E; 1A1L A; 2HGH A; 2EL5 A; 1GQE A; 4DR4 E; 2VRD A; 1KYQ A; 1YYW A; 1NEI A; 2FV4 B; 2EMC A; 2YTJ A; 2LMZ A; 5A6K A; 2ENA A; 5AC4 A; 3ECR A; 2UXB E; 2YTQ A; 4IJD A; 2EWL A; 2EPM X; 2DIX A; 1IBK E; #chains in the Genus database with same CATH homology 2UUA E; 4LF6 E; 4WYQ B; 3HTX A; 4P78 A; 4BC7 A; 3VK6 A; 2DB2 A; 1WXR A; 2V86 A; 3VYX A; 3C4T A; 4X62 E; 2M1S A; 1YYO A; 1IBL E; 4K0K E; 5AE3 A; 4GEQ B; 4X66 E; 4JI3 E; 4F9A B; 2YT4 A; 2LBS B; 4R8O A; 1FKA E; 4M0V A; 1SR9 A; 4KZS A; 5AE1 A; 4JV5 E; 1X48 A; 2LJH A; 2V85 A; 2ZM6 E; 2L92 A; 2LUQ A; 4LTY A; 4DV0 E; 1HR0 E; 1J26 A; 3T1H E; 1N34 E; 4X8W A; 3JAM C; 4DUY E; 3P1X A; 4TUG A; 4NXN E; 4TUI A; 4BCA A; 5FLX C; 5IWA E; 1T4O A; 1X47 A; 3HPS A; 4JI5 E; 1WHN A; 2H36 X; 4WFT A; 1QU6 A; 4BC9 A; 2L2N A; 4F54 A; 4WPY A; 4JI1 E; 1T4N A; 2B3T B; 2MC5 A; 1PKP A; 3H09 A; 5T6J A; 4OOG C; 4DV7 E; 2NUG A; 4GKJ E; 3HPZ A; 2K4V A; 4DUZ E; 3F6G A; 3IWB A; 4M2Z A; 4DR7 E; 4NXM E; 4J8Z A; 1XMO E; 3IWC A; 4BS9 A; 3J80 C; 2L33 A; 2ODR D; 3OTO E; 2V8Q B; 1GZ6 A; 4DR3 E; 2L8T A; 2MC6 A; 2RS6 A; 3LML A; 2NA2 A; 2WZO A; 2F8B A; 2RTX A; 2LTS A; 5IT9 C; 4JI6 E; 3DJW A; 4B3R E; 5AAS A; 4LF8 E; 1YZ9 A; 4YHH E; 2VE7 C; 3DF6 A; 2VF1 A; 3C4B A; 2UU9 E; 5AE2 A; 4L8N A; 3J81 C; 4AQY E; 3KWR A; 4DR5 E; 3ADI A; 1J5E E; 1STU A; 3ADG A; 4F9C B; 1EKZ A; 4DMI A; 2L3C A; 2NUF A; 5LL6 R; 5LMU E; 4JI2 E; 4LFC E; 4F9B B; 2NUE A; 1FJG E; 1XNR E; 2UXD E; 2ODR C; 2G7H A; 4DV6 E; 1XNQ E; 2EZ6 A; 3J7Y p; 2V87 A; 1ZBT A; 2LRS A; 2M7Q A; 2B9D A; 4DV4 E; 1HNW E; 2JR1 A; 2L3J A; 3HXL A; 4DR1 E; 4LF9 E; 4X65 E; 2N3G A; 1RC7 A; 1N32 E; 3VYY A; 4JYA E; 4DV1 E; 2JOX A; 1N33 E; 4DKK A; 4JI4 E; 2DMY A; 2V88 A; 1DQ3 A; 1X49 A; 2IHR 1; 3OML A; 4LU9 A; 5DNY A; 5A2Q C; 4DV3 E; 2YZT A; 2UUC E; 2V83 A; 3K6Q A; 2CPN A; 4R03 A; 2L2K B; 2VQF E; 4B3T E; 3IWD A; 2KON A; 3AUZ A; 4LFB E; 2HHH E; 2E1M A; 4L5N C; 3MSW A; 4YY3 E; 2LUP B; 3T1Y E; 1HNX E; 4B3S E; 1O0W A; 2JWO A; 2VQE E; 2FGG A; 4OX9 E; 4P7D A; 2F4V E; 2KHX A; 3JU0 A; 1ZBQ A; 3FIG A; 3J7A G; 2JOB A; 2L2M A; 2RS7 A; 2V89 A; 3F6H A; 3JTZ A; 1UIL A; 2JVA A; 5BR8 E; 5LMN E; 2LTR A; 4X64 E; 2FTX B; 4GKK E; 4BBY A; 2LE2 A; 3LLH A; 3RMP A; 2B7V A; 1I94 E; 4Q28 A; 2MDR A; 5F3W A; 4M30 A; 1UHZ A; 4LFA E; 1IBM E; 3AV0 A; 2E5L E; 1RQ0 A; 1N36 E; 1DI2 A; 4DV5 E; 1WHQ A; 4BMJ A; 1GQE A; 4DR4 E; 1YYK A; 1XMQ E; 2UXC E; 1HNZ E; 4KHP E; 2L6M A; 1YYW A; 4DR2 E; 4I8O A; 3ADJ A; 2DSY A; 4LF4 E; 4JI8 E; 2FV4 B; 5ADZ A; 2N3H A; 2M4I A; 4B3M E; 4LF7 E; 2LMZ A; 4JI7 E; 4LF5 E; 2JY9 A; 4DV2 E; 2KOU A; 2B7T A; 3ADL A; 4DR6 E; 2UUB E; 4JI0 E; 4WSP A; 2RSM A; 2UXB E; 1T4L B; 3ZOQ B; 3HQ1 A; 5CFF E; 2EWL A; 2DIX A; 1IBK E;
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