The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
45
|
sequence length |
154
|
structure length |
151
|
Chain Sequence |
FSRSDHLAEHQRTHKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
5'-D(*CP*AP*GP*AP*TP*GP*TP*AP*GP*GP*GP*AP*AP*AP*AP*GP*CP*CP*
|
| publication title |
Structure of Aart, a Designed Six-finger Zinc Finger Peptide, Bound to DNA.
pubmed doi rcsb |
| source organism |
Mus musculus
|
| molecule tags |
Dna binding protein/dna
|
| total genus |
45
|
| structure length |
151
|
| sequence length |
154
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-08-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00096 | zf-C2H2 | Zinc finger, C2H2 type |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | ||
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger |
#chains in the Genus database with same CATH superfamily 1G2D C; 2EPX A; 2DLQ A; 2MKD A; 2YTQ A; 2DLK A; 3VHT B; 1X5W A; 4R2D A; 5KL5 A; 2EMB A; 3MHH C; 2LVH A; 2EQ1 A; 3EPK A; 1YUI A; 2EPR A; 2J7J A; 1TF6 A; 1Z1B A; 2EM4 A; 1LLM C; 2EMA A; 2ENA A; 2EOX A; 2YTE A; 3EPJ A; 1A1L A; 3UK3 C; 2LV2 A; 1DGC A; 3MHS C; 1WJP A; 4GZN C; 3EPL A; 2EPP A; 2EMC A; 2EN1 A; 2EN6 A; 1BBO A; 4F6M A; 2EN4 A; 3M99 B; 1G2F C; 2EOR A; 2EPU A; 1JK2 A; 1UBD C; 1NCS A; 2YU8 A; 2ELY A; 4IS1 C; 2GLI A; 4M9V C; 2YSO A; 2EOY A; 5KL3 A; 1YUJ A; 1B69 A; 3EPH A; 2EN8 A; 2EMX A; 2MDG A; 2EL5 A; 2EMZ A; 2EQ0 A; 2M9A A; 2I13 A; 2EOQ A; 2EM3 A; 5KL7 A; 2EQ3 A; 2YTN A; 2YRH A; 2WBS A; 2EOH A; 2EML A; 2EOF A; 1TF3 A; 2EN2 A; 1A1K A; 1KJK A; 2EL4 A; 2A25 A; 2YTD A; 2JP9 A; 5KL6 A; 2HGH A; 2EOM A; 2YTG A; 2YTI A; 2YTF A; 2MKN A; 4WSG A; 4R2A A; 1RMD A; 2EL6 A; 2EM5 A; 2EMG A; 1ZU1 A; 2YRK A; 4F2J C; 2EOO A; 2LT7 A; 1TN9 A; 2EOZ A; 1P47 A; 5KL4 A; 4F6N A; 1A1I A; 4R2S A; 1A1F A; 2EMI A; 1F2I G; 2DMI A; 2YU5 A; 2LCE A; 2BB8 A; 4R2P A; 1ZAA C; 2EMH A; 2EPZ A; 2D9H A; 2EOJ A; 4X9J A; 2YTJ A; 2EMY A; 1X6H A; 1X6E A; 1X6F A; 2NAB A; 2EM7 A; 2ENC A; 2GHF A; 2ELZ A; 2EPA A; 2EM2 A; 2ENH A; 2ADR A; 1A1H A; 2EM6 A; 2E72 A; 2DRP A; 1BB8 A; 2EJ4 A; 2EM9 A; 2EOS A; 1JK1 A; 2R1F A; 2EE8 A; 2EMW A; 2VRD A; 2EP3 A; 2EPC A; 2EM8 A; 2WBT A; 2EOI A; 2EMF A; 2YTP A; 2EOE A; 2YTO A; 4R2C A; 1MEY C; 2JPA A; 2RSI A; 1YSA C; 4R2Q A; 2EMK A; 1A1G A; 2EN7 A; 1X3C A; 1ZR9 A; 2EM0 A; 4FK5 C; 2YRM A; 2PRT A; 5KL2 A; 2CSH A; 2WCC 3; 2WBU A; 4IJD A; 2CT1 A; 4R2R A; 2EN3 A; 4R2E A; 2CTD A; 2DGC A; 1UN6 B; 1A1J A; 2YSP A; 2RPC A; 2LO3 A; 1AAY A; #chains in the Genus database with same CATH topology 4Q28 A; 3ECR A; 2DLQ A; 5AC5 A; 2DLK A; 4LTY A; 4X64 E; 4LFC E; 1X5W A; 4R2D A; 2EQ1 A; 2H36 X; 4JI7 E; 3P1X A; 5AC4 A; 1TF6 A; 1Z1B A; 4KHP E; 4M30 A; 4AQY E; 2JVA A; 1YZ9 A; 4JI6 E; 4LF8 E; 3ADL A; 2EPP A; 2I9I A; 2EN1 A; 4LF6 E; 2M4I A; 1BBO A; 4F6M A; 4M0V A; 2VQE E; 3ADG A; 4JI1 E; 5LL6 R; 2NA2 A; 5A6A A; 4DUZ E; 2VQF E; 3T1Y E; 2EOY A; 1YUJ A; 2EN8 A; 4DV7 E; 2I13 A; 5KL7 A; 2YTN A; 1TF3 A; 4ZYE A; 1ZBT A; 1A1K A; 5TSE A; 3THN A; 4O4K A; 2JP9 A; 2RSM A; 2EOM A; 1MGT A; 2L6M A; 2B7T A; 5IXM B; 2VF1 A; 1ZU1 A; 3K6Q A; 1YPN A; 1EH7 A; 2EOO A; 2R76 A; 1P47 A; 2MDR A; 1O0W A; 4R2S A; 2LTR A; 2LCE A; 1I94 E; 4R2P A; 2EPZ A; 2WZO A; 2NAB A; 2EM7 A; 2L92 A; 2RQL A; 3J7Y p; 1J5E E; 2YPN A; 1SFE A; 3JU0 A; 4DV5 E; 4B3M E; 2B9D A; 5A69 A; 2ELZ A; 2ENH A; 2ADR A; 5DNY A; 1BB8 A; 4I8O A; 5FLX C; 2NUG A; 2EMW A; 2EP3 A; 3OTO E; 2EM8 A; 4WX9 A; 2EOI A; 2DSY A; 2YTP A; 2EOE A; 2YTO A; 2HC5 A; 1YYO A; 2RSI A; 4DV0 E; 3ZOQ B; 2EN7 A; 4FK5 C; 4L5N C; 2PRT A; 1WXR A; 2CSH A; 3H09 A; 1QU6 A; 2WBU A; 4R2R A; 4OOG C; 4X65 E; 1IMU A; 1A1J A; 2L8T A; 5BR8 E; 4B3S E; 1G2D C; 4DMI A; 1T38 A; 2EPX A; 5A2Q C; 2EPN A; 2NUE A; 1HNZ E; 2GPI A; 2EPM X; 3MHH C; 1PJT A; 2LBS B; 4JI4 E; 2EPR A; 2J7J A; 4DR1 E; 2ODR D; 2L2M A; 4MLV A; 3HPZ A; 1GTK A; 2EMA A; 1A1L A; 2N8X A; 5CFF E; 1XMQ E; 4B3T E; 3MHS C; 3MSW A; 3DJW A; 4WYQ B; 5AE1 A; 3F6G A; 3VYX A; 3EPL A; 2EMC A; 4BCA A; 3FIG A; 4BS9 A; 2ODR C; 2RS6 A; 2MC6 A; 4BC9 A; 5F3W A; 2LUQ A; 2YU8 A; 2GLI A; 4M9V C; 5IT9 C; 3F6H A; 1IBL E; 1PKP A; 5KL3 A; 1EKZ A; 1T4N A; 3OML A; 3ADJ A; 2LRS A; 4WPY A; 3QG5 C; 1YYW A; 4JI2 E; 2EML A; 2EOF A; 2EN2 A; 1KJK A; 2HGH A; 2YTG A; 2MKN A; 4L8N A; 4WSG A; 2EMG A; 2EM5 A; 4DR3 E; 2VE7 C; 2YRK A; 2EPK X; 4P7D A; 2LT7 A; 2EOZ A; 1FKA E; 4JI8 E; 4JYA E; 4GEQ B; 1N33 E; 1L4S A; 4DR6 E; 4KZS A; 3IWC A; 1A1F A; 2DMI A; 4NZV A; 1X48 A; 1N32 E; 1ZAA C; 2EMH A; 4P78 A; 2D9H A; 4X9J A; 4LF7 E; 2EMY A; 2JYA A; 3DF6 A; 5LMN E; 2JWO A; 2HJJ A; 2ENC A; 2KOU A; 2HHH E; 2UUC E; 4MLQ A; 2EOS A; 5IWA E; 1HNW E; 2B3T B; 3LML A; 2EE8 A; 1HNX E; 2YZT A; 1WRJ A; 4NXN E; 5A6B A; 2EMK A; 2B7V A; 1UHZ A; 1RC7 A; 1ZR9 A; 2L2K B; 3HXL A; 2YRM A; 5KL2 A; 2FV4 B; 5LLQ A; 4R2E A; 1N3G A; 2DGC A; 4F9C B; 1AAY A; 2MKD A; 4JI0 E; 2YTQ A; 3JTZ A; 2E5L E; 5AAS A; 2EZ6 A; 3THO B; 4BHC A; 2LVH A; 3EPK A; 2JOX A; 3J7A G; 1YUI A; 4LU9 A; 2EWL A; 4R8O A; 3KZZ A; 4BC7 A; 1LLM C; 3T1H E; 2YTE A; 2ENA A; 2JOB A; 4GKJ E; 3UK3 C; 1DGC A; 2G7H A; 4GZN C; 2V86 A; 3J81 C; 4KWY A; 4O24 A; 1IQS A; 5A6B D; 3J80 C; 4LF9 E; 1PDA A; 4K0K E; 1N36 E; 1XMO E; 4DR2 E; 2EN4 A; 1DQ3 A; 3M99 B; 1G2F C; 5IV8 B; 2LMZ A; 2EPU A; 1UBD C; 4DV1 E; 1NCS A; 4X66 E; 2ELY A; 4LFB E; 4IS1 C; 2YSO A; 4DV4 E; 2K7I A; 2N3H A; 4ZYD A; 3C4B A; 2V85 A; 4M2Z A; 2JR1 A; 1J26 A; 2MDG A; 2FTX B; 2EL5 A; 2EMZ A; 2EQ0 A; 3BBG A; 3C4T A; 3VYY A; 2EOQ A; 2EM3 A; 4Q35 B; 4WXD A; 4F9A B; 2YRH A; 2WBS A; 1IBM E; 1YYK A; 1GZ6 A; 2A25 A; 2RTX A; 3BID A; 5AE3 A; 1X47 A; 2YTF A; 2EPL X; 2M7Q A; 4R2A A; 1RMD A; 2V87 A; 2L3J A; 3C6K A; 1TN9 A; 1T4L B; 3HTX A; 1SR9 A; 4ZYH A; 1A1I A; 3VK6 A; 2YU5 A; 3HQ1 A; 2F8B A; 3LLH A; 2BB8 A; 4DV6 E; 3AV0 A; 2EOJ A; 2YTJ A; 1X6E A; 1X6F A; 4TUI A; 3KWR A; 2K4V A; 2E1M A; 3KZY A; 4NHR A; 2F4V E; 1UIL A; 2EM2 A; 1A1H A; 2EM6 A; 1IQO A; 1XNR E; 2EJ4 A; 2R1F A; 4LF5 E; 4LF4 E; 1FJG E; 2EPC A; 1XNQ E; 2EPO A; 2V89 A; 2RS7 A; 4R03 A; 2DMY A; 2YT4 A; 2N3G A; 1MEY C; 1QNT A; 1YSA C; 1A1G A; 2JY9 A; 2NUF A; 2WCC 3; 2LE2 A; 3C6M A; 2CT1 A; 2UXB E; 2EN3 A; 1EH6 A; 2FGG A; 2YSP A; 4O43 A; 2RPC A; 2LJU A; 2UU9 E; 3VHT B; 1PJS A; 2YWQ A; 2DIX A; 4BBY A; 3AUZ A; 4RHB B; 4JI5 E; 4JI3 E; 4OX9 E; 5KL5 A; 2EMB A; 2L2N A; 4DV3 E; 3JAM C; 3IWB A; 2M1S A; 2L3C A; 5LMU E; 4WXC A; 4DR4 E; 2CPN A; 1T39 A; 5AE2 A; 1IBK E; 2EM4 A; 2EOX A; 3EPJ A; 1NEI A; 2LV2 A; 5T6J A; 2V83 A; 1WJP A; 4YHH E; 1YFH A; 1T4O A; 4RH8 A; 1BBG A; 2LJH A; 2EN6 A; 4DV2 E; 5ADZ A; 2EOR A; 4DUY E; 1JK2 A; 1ZBQ A; 1X49 A; 4J8Z A; 2DB2 A; 1B69 A; 3EPH A; 2EMX A; 2M9A A; 2EQ3 A; 3BGH A; 2L33 A; 2EOH A; 2UUB E; 2LUP B; 2EL4 A; 1GQE A; 4F54 A; 2YTD A; 4DKK A; 5KL6 A; 3EQ1 A; 2YTI A; 3L00 A; 4DR7 E; 3BF2 A; 1STU A; 3HPS A; 4WFT A; 5A6J A; 3IWD A; 2EL6 A; 4F2J C; 2V88 A; 1N34 E; 4WSP A; 2ZM6 E; 4O5G A; 3RMP A; 5KL4 A; 2Q8U A; 4F6N A; 2JXP A; 4X62 E; 1KYQ A; 1WHQ A; 2IHR 1; 2EMI A; 1F2I G; 4NXM E; 2UUA E; 2BBG A; 4LFA E; 1WHN A; 1X6H A; 4HTG A; 4HEI A; 2KON A; 3ADI A; 2MC5 A; 1RQ0 A; 2GHF A; 3TQM A; 1AH5 A; 2EPA A; 4F9B B; 4ZYG A; 2E72 A; 2DRP A; 2EM9 A; 4BHB A; 1JK1 A; 2V8Q B; 2VRD A; 5A6K A; 1EH8 A; 2UXC E; 2WBT A; 4X8W A; 1PJQ A; 4DR5 E; 2EMF A; 1DI2 A; 4R2C A; 4TUG A; 2JPA A; 4R2Q A; 1X3C A; 2EM0 A; 4BMJ A; 2UXD E; 4YY3 E; 2KHX A; 1HR0 E; 4GKK E; 4IJD A; 4B3R E; 4N4R B; 2CTD A; 2LTS A; 1UN6 B; 2LO3 A; 4JV5 E; #chains in the Genus database with same CATH homology 1G2D C; 2EPX A; 2DLQ A; 2MKD A; 2YTQ A; 2DLK A; 3VHT B; 1X5W A; 4R2D A; 5KL5 A; 2EMB A; 3MHH C; 2LVH A; 2EQ1 A; 3EPK A; 1YUI A; 2EPR A; 2J7J A; 1TF6 A; 1Z1B A; 2EM4 A; 1LLM C; 2EMA A; 2ENA A; 2EOX A; 2YTE A; 3EPJ A; 1A1L A; 3UK3 C; 2LV2 A; 1DGC A; 3MHS C; 1WJP A; 4GZN C; 3EPL A; 2EPP A; 2EMC A; 2EN1 A; 2EN6 A; 1BBO A; 4F6M A; 2EN4 A; 3M99 B; 1G2F C; 2EOR A; 2EPU A; 1JK2 A; 1UBD C; 1NCS A; 2YU8 A; 2ELY A; 4IS1 C; 2GLI A; 4M9V C; 2YSO A; 2EOY A; 5KL3 A; 1YUJ A; 1B69 A; 3EPH A; 2EN8 A; 2EMX A; 2MDG A; 2EL5 A; 2EMZ A; 2EQ0 A; 2M9A A; 2I13 A; 2EOQ A; 2EM3 A; 5KL7 A; 2EQ3 A; 2YTN A; 2YRH A; 2WBS A; 2EOH A; 2EML A; 2EOF A; 1TF3 A; 2EN2 A; 1A1K A; 1KJK A; 2EL4 A; 2A25 A; 2YTD A; 2JP9 A; 5KL6 A; 2HGH A; 2EOM A; 2YTG A; 2YTI A; 2YTF A; 2MKN A; 4WSG A; 4R2A A; 1RMD A; 2EL6 A; 2EM5 A; 2EMG A; 1ZU1 A; 2YRK A; 4F2J C; 2EOO A; 2LT7 A; 1TN9 A; 2EOZ A; 1P47 A; 5KL4 A; 4F6N A; 1A1I A; 4R2S A; 1A1F A; 2EMI A; 1F2I G; 2DMI A; 2YU5 A; 2LCE A; 2BB8 A; 4R2P A; 1ZAA C; 2EMH A; 2EPZ A; 2D9H A; 2EOJ A; 4X9J A; 2YTJ A; 2EMY A; 1X6H A; 1X6E A; 1X6F A; 2NAB A; 2EM7 A; 2ENC A; 2GHF A; 2ELZ A; 2EPA A; 2EM2 A; 2ENH A; 2ADR A; 1A1H A; 2EM6 A; 2E72 A; 2DRP A; 1BB8 A; 2EJ4 A; 2EM9 A; 2EOS A; 1JK1 A; 2R1F A; 2EE8 A; 2EMW A; 2VRD A; 2EP3 A; 2EPC A; 2EM8 A; 2WBT A; 2EOI A; 2EMF A; 2YTP A; 2EOE A; 2YTO A; 4R2C A; 1MEY C; 2JPA A; 2RSI A; 1YSA C; 4R2Q A; 2EMK A; 1A1G A; 2EN7 A; 1X3C A; 1ZR9 A; 2EM0 A; 4FK5 C; 2YRM A; 2PRT A; 5KL2 A; 2CSH A; 2WCC 3; 2WBU A; 4IJD A; 2CT1 A; 4R2R A; 2EN3 A; 4R2E A; 2CTD A; 2DGC A; 1UN6 B; 1A1J A; 2YSP A; 2RPC A; 2LO3 A; 1AAY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
