2I9IA

Crystal structure of helicobacter pylori protein hp0492
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
221
structure length
221
Chain Sequence
ERMKTSSEHVTPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELTKENIDKYREAIDRMKGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical protein
publication title Crystal Structure of Helicobacter pylori hypothetical protein O25234
rcsb
source organism Helicobacter pylori
molecule tags Structural genomics, unknown function
total genus 79
structure length 221
sequence length 221
ec nomenclature
pdb deposition date 2006-09-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.180 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Putative neuraminyllactose-binding hemagglutinin homolog like domain 2i9iA00
2I9IA 3BGHA
chains in the Genus database with same CATH superfamily
3M99B 2WBSA 3J7AG 5F3WA 3AV0A 1UBDC 3THNA 4BC7A 1X47A 1O0WA 3VK6A 2ZM6E 2EPUA 3LMLA 5ADZA 2EM7A 4NXME 1AAYA 3T1YE 4ZYHA 2JY9A 2V88A 5KL5A 5AE1A 1KYQA 1X6EA 3MHSC 2WCC3 4O24A 2A25A 4JI4E 5KL7A 5BR8E 1NCSA 1SFEA 2LT7A 2M4IA 2DLQA 2ELYA 1MEYC 4F54A 5A6KA 2V85A 4LF9E 4DR1E 2E5LE 1YFHA 2YTOA 2UXBE 4BHCA 3C6KA 1L4SA 2EQ0A 1N3GA 2B3TB 2E72A 2EMLA 2YRHA 4WSGA 3ADIA 2NUGA 2LBSB 2EMGA 4WXDA 4GZNC 2DMIA 2EPKX 1WXRA 2LVHA 4M2ZA 4X9JA 1AH5A 2EMZA 5LMNE 1J26A 4KHPE 2LV2A 3DJWA 2EN4A 4BCAA 4F6MA 4LF4E 1KJKA 4JYAE 1RC7A 5KL4A 2I9IA 2EL5A 5IWAE 4DR3E 4JI0E 4LF6E 1X6FA 4F2JC 4DR7E 4Q28A 1DI2A 3C4BA 2YRKA 2UUAE 3MHHC 2EMCA 3THOB 2WBTA 4OX9E 1YYWA 2EOEA 2MC5A 1X3CA 2JXPA 4DV6E 2ODRD 1BBOA 4WPYA 4DV0E 5DNYA 2DSYA 2V89A 2NUEA 4M0VA 3F6HA 1EH7A 2JOBA 2L6MA 1QU6A 1PJTA 2DIXA 4GEQB 1PDAA 1A1FA 2RSIA 1HNXE 3AUZA 4O43A 2KOUA 2CPNA 1YYKA 1IBME 3UK3C 2YT4A 2EPNA 1SR9A 2FTXB 2EOSA 2EZ6A 3EPJA 1XNQE 1WJPA 2EM0A 3FIGA 4R03A 3BIDA 5LMUE 4B3RE 5LL6R 4X65E 1X6HA 2MKDA 1LLMC 3BF2A 2KONA 3P1XA 2EN6A 5AC5A 1YPNA 5AASA 4X66E 4DV1E 2RPCA 2UUCE 2CTDA 4LF7E 1X48A 4F9AB 3J7Yp 2N3HA 2HJJA 1JK1A 1TF6A 4ZYDA 3HQ1A 2D9HA 1YZ9A 2YSPA 2EPLX 2EQ3A 4AQYE 3EPKA 1UHZA 4RHBB 2LRSA 2ODRC 2EM5A 2EM3A 3DF6A 2J7JA 4FK5C 2K4VA 2M7QA 2EOHA 2EM9A 4M30A 2EMKA 2YZTA 2EM8A 2EMYA 2L8TA 5IV8B 2E1MA 2DB2A 2CSHA 4YY3E 1IQSA 2YTDA 1PJSA 5A6JA 2EM4A 2EOQA 1F2IG 4M9VC 3OTOE 4I8OA 4R2CA 1RMDA 4DV2E 1YUJA 4TUGA 2EQ1A 4RH8A 1A1LA 2ENHA 2RQLA 1STUA 2F4VE 1T38A 2EWLA 4JI1E 3ADLA 4Q35B 4J8ZA 2WBUA 5FLXC 3IWDA 4DV4E 2EOMA 2VE7C 4KZSA 2EN7A 1A1KA 2EMWA 4BS9A 2EPPA 2LTSA 2RSMA 2EMHA 4DR6E 2LMZA 2MKNA 2DLKA 2GHFA 4R2PA 1BBGA 2HHHE 2EOFA 3C4TA 1T39A 2EN2A 4DV5E 2NABA 1JK2A 3IWBA 2YTGA 2EPAA 2IHR1 4ZYEA 1A1IA 4X62E 2EOIA 2BB8A 2LTRA 3HPSA 1IBLE 2YSOA 2I13A 1FJGE 1N32E 4BC9A 2YTEA 2EOYA 2RS7A 4N4RB 2LUQA 2EOZA 2L2NA 2YU5A 2EN8A 2B7TA 3TQMA 5TSEA 2VQFE 1WHNA 2DMYA 2B7VA 1ZBQA 4IS1C 2N3GA 3OMLA 2YWQA 2DGCA 1GTKA 2EP3A 2V83A 3MSWA 4WXCA 4X64E 3K6QA 4DUZE 2M9AA 2R1FA 4HEIA 1T4LB 1N34E 2EMIA 2L2KB 1HNZE 4K0KE 1XMOE 3HTXA 4BBYA 1WRJA 3RMPA 2F8BA 2H36X 1GQEA 2LUPB 1Z1BA 2L33A 4YHHE 1N36E 4B3TE 1IMUA 2GPIA 2EPOA 3VYYA 3LLHA 2JWOA 2EOJA 3JTZA 2NA2A 5AE2A 5A6BD 2JVAA 5KL6A 2EMXA 2EN3A 4P7DA 2L3CA 4F6NA 4WFTA 5IT9C 3ZOQB 2VF1A 5AC4A 1ZR9A 4DR4E 2EOXA 4DR5E 2JR1A 5CFFE 3ECRA 2L92A 4JI6E 4R2QA 1A1JA 2ADRA 4R2AA 1QNTA 3J80C 1I94E 1J5EE 2ELZA 4KWYA 3ADJA 3QG5C 2JPAA 4NHRA 2EPRA 4R2RA 1ZAAC 2G7HA 2MC6A 2YTJA 2LCEA 1P47A 3EPHA 1MGTA 2EN1A 2K7IA 4DKKA 4LFBE 2EPCA 2YTNA 1EKZA 2RTXA 1EH6A 4JI8E 3C6MA 2YTFA 1NEIA 2JOXA 5A6AA 2V87A 2MDGA 3T1HE 1HR0E 2KHXA 4GKKE 2WZOA 2NUFA 1WHQA 1ZU1A 1X49A 4GKJE 5KL2A 3JU0A 2R76A 4B3ME 4NXNE 4DMIA 4WYQB 5KL3A 1IQOA 4F9BB 2Q8UA 4MLQA 3J81C 2PRTA 2EMAA 3JAMC 2EM2A 4IJDA 4OOGC 3IWCA 3HPZA 4X8WA 1T4OA 2DRPA 2UU9E 1TN9A 1PJQA 4LU9A 4ZYGA 4R2EA 3BBGA 2UXDE 2HGHA 3F6GA 1FKAE 4O5GA 2L2MA 4MLVA 2RS6A 4LFAE 2VRDA 2BBGA 1N33E 5IXMB 2B9DA 1YSAC 1TF3A 3VYXA 2GLIA 2EMFA 4LFCE 2EORA 1BB8A 2UUBE 2EL6A 1HNWE 3KZZA 5T6JA 4TUIA 2EOOA 4DR2E 2EPZA 2YTIA 1T4NA 4P78A 1GZ6A 2EMBA 2ENCA 1G2FC 4LF8E 5A2QC 3KWRA 2YTQA 1A1HA 2UXCE 3L00A 2EE8A 1UILA 1XNRE 4R2DA 2EPMX 1YUIA 1YYOA 2YPNA 4JI2E 2LJHA 2V8QB 1DQ3A 4BMJA 3EPLA 1EH8A 1XMQE 4L5NC 3HXLA 2LJUA 2LO3A 1B69A 4F9CB 1ZBTA 2JP9A 1UN6B 5A6BA 3VHTB 2N8XA 4JV5E 2LE2A 1G2DC 1RQ0A 4BHBA 5A69A 5LLQA 2FGGA 3BGHA 3KZYA 3ADGA 2MDRA 2EM6A 4R8OA 2EJ4A 2EPXA 4B3SE 2ENAA 1X5WA 4JI7E 4JI3E 4R2SA 2V86A 2L3JA 4WX9A 3EQ1A 4O4KA 2M1SA 4JI5E 4LF5E 2YRMA 4NZVA 4WSPA 2JYAA 1IBKE 4LTYA 3H09A 2YTPA 2HC5A 5AE3A 4DUYE 2CT1A 2EL4A 1A1GA 4HTGA 1PKPA 2FV4B 2YU8A 4L8NA 1DGCA 2VQEE 4DV3E 4DV7E
chains in the Genus database with same CATH topology
2I9IA 3BGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I9I A;  3BGH A; 
#chains in the Genus database with same CATH topology
 3M99 B;  2WBS A;  3J7A G;  5F3W A;  3AV0 A;  1UBD C;  3THN A;  4BC7 A;  1X47 A;  1O0W A;  3VK6 A;  2ZM6 E;  2EPU A;  3LML A;  5ADZ A;  2EM7 A;  4NXM E;  1AAY A;  3T1Y E;  4ZYH A;  2JY9 A;  2V88 A;  5KL5 A;  5AE1 A;  1KYQ A;  1X6E A;  3MHS C;  2WCC 3;  4O24 A;  2A25 A;  4JI4 E;  5KL7 A;  5BR8 E;  1NCS A;  1SFE A;  2LT7 A;  2M4I A;  2DLQ A;  2ELY A;  1MEY C;  4F54 A;  5A6K A;  2V85 A;  4LF9 E;  4DR1 E;  2E5L E;  1YFH A;  2YTO A;  2UXB E;  4BHC A;  3C6K A;  1L4S A;  2EQ0 A;  1N3G A;  2B3T B;  2E72 A;  2EML A;  2YRH A;  4WSG A;  3ADI A;  2NUG A;  2LBS B;  2EMG A;  4WXD A;  4GZN C;  2DMI A;  2EPK X;  1WXR A;  2LVH A;  4M2Z A;  4X9J A;  1AH5 A;  2EMZ A;  5LMN E;  1J26 A;  4KHP E;  2LV2 A;  3DJW A;  2EN4 A;  4BCA A;  4F6M A;  4LF4 E;  1KJK A;  4JYA E;  1RC7 A;  5KL4 A;  2I9I A;  2EL5 A;  5IWA E;  4DR3 E;  4JI0 E;  4LF6 E;  1X6F A;  4F2J C;  4DR7 E;  4Q28 A;  1DI2 A;  3C4B A;  2YRK A;  2UUA E;  3MHH C;  2EMC A;  3THO B;  2WBT A;  4OX9 E;  1YYW A;  2EOE A;  2MC5 A;  1X3C A;  2JXP A;  4DV6 E;  2ODR D;  1BBO A;  4WPY A;  4DV0 E;  5DNY A;  2DSY A;  2V89 A;  2NUE A;  4M0V A;  3F6H A;  1EH7 A;  2JOB A;  2L6M A;  1QU6 A;  1PJT A;  2DIX A;  4GEQ B;  1PDA A;  1A1F A;  2RSI A;  1HNX E;  3AUZ A;  4O43 A;  2KOU A;  2CPN A;  1YYK A;  1IBM E;  3UK3 C;  2YT4 A;  2EPN A;  1SR9 A;  2FTX B;  2EOS A;  2EZ6 A;  3EPJ A;  1XNQ E;  1WJP A;  2EM0 A;  3FIG A;  4R03 A;  3BID A;  5LMU E;  4B3R E;  5LL6 R;  4X65 E;  1X6H A;  2MKD A;  1LLM C;  3BF2 A;  2KON A;  3P1X A;  2EN6 A;  5AC5 A;  1YPN A;  5AAS A;  4X66 E;  4DV1 E;  2RPC A;  2UUC E;  2CTD A;  4LF7 E;  1X48 A;  4F9A B;  3J7Y p;  2N3H A;  2HJJ A;  1JK1 A;  1TF6 A;  4ZYD A;  3HQ1 A;  2D9H A;  1YZ9 A;  2YSP A;  2EPL X;  2EQ3 A;  4AQY E;  3EPK A;  1UHZ A;  4RHB B;  2LRS A;  2ODR C;  2EM5 A;  2EM3 A;  3DF6 A;  2J7J A;  4FK5 C;  2K4V A;  2M7Q A;  2EOH A;  2EM9 A;  4M30 A;  2EMK A;  2YZT A;  2EM8 A;  2EMY A;  2L8T A;  5IV8 B;  2E1M A;  2DB2 A;  2CSH A;  4YY3 E;  1IQS A;  2YTD A;  1PJS A;  5A6J A;  2EM4 A;  2EOQ A;  1F2I G;  4M9V C;  3OTO E;  4I8O A;  4R2C A;  1RMD A;  4DV2 E;  1YUJ A;  4TUG A;  2EQ1 A;  4RH8 A;  1A1L A;  2ENH A;  2RQL A;  1STU A;  2F4V E;  1T38 A;  2EWL A;  4JI1 E;  3ADL A;  4Q35 B;  4J8Z A;  2WBU A;  5FLX C;  3IWD A;  4DV4 E;  2EOM A;  2VE7 C;  4KZS A;  2EN7 A;  1A1K A;  2EMW A;  4BS9 A;  2EPP A;  2LTS A;  2RSM A;  2EMH A;  4DR6 E;  2LMZ A;  2MKN A;  2DLK A;  2GHF A;  4R2P A;  1BBG A;  2HHH E;  2EOF A;  3C4T A;  1T39 A;  2EN2 A;  4DV5 E;  2NAB A;  1JK2 A;  3IWB A;  2YTG A;  2EPA A;  2IHR 1;  4ZYE A;  1A1I A;  4X62 E;  2EOI A;  2BB8 A;  2LTR A;  3HPS A;  1IBL E;  2YSO A;  2I13 A;  1FJG E;  1N32 E;  4BC9 A;  2YTE A;  2EOY A;  2RS7 A;  4N4R B;  2LUQ A;  2EOZ A;  2L2N A;  2YU5 A;  2EN8 A;  2B7T A;  3TQM A;  5TSE A;  2VQF E;  1WHN A;  2DMY A;  2B7V A;  1ZBQ A;  4IS1 C;  2N3G A;  3OML A;  2YWQ A;  2DGC A;  1GTK A;  2EP3 A;  2V83 A;  3MSW A;  4WXC A;  4X64 E;  3K6Q A;  4DUZ E;  2M9A A;  2R1F A;  4HEI A;  1T4L B;  1N34 E;  2EMI A;  2L2K B;  1HNZ E;  4K0K E;  1XMO E;  3HTX A;  4BBY A;  1WRJ A;  3RMP A;  2F8B A;  2H36 X;  1GQE A;  2LUP B;  1Z1B A;  2L33 A;  4YHH E;  1N36 E;  4B3T E;  1IMU A;  2GPI A;  2EPO A;  3VYY A;  3LLH A;  2JWO A;  2EOJ A;  3JTZ A;  2NA2 A;  5AE2 A;  5A6B D;  2JVA A;  5KL6 A;  2EMX A;  2EN3 A;  4P7D A;  2L3C A;  4F6N A;  4WFT A;  5IT9 C;  3ZOQ B;  2VF1 A;  5AC4 A;  1ZR9 A;  4DR4 E;  2EOX A;  4DR5 E;  2JR1 A;  5CFF E;  3ECR A;  2L92 A;  4JI6 E;  4R2Q A;  1A1J A;  2ADR A;  4R2A A;  1QNT A;  3J80 C;  1I94 E;  1J5E E;  2ELZ A;  4KWY A;  3ADJ A;  3QG5 C;  2JPA A;  4NHR A;  2EPR A;  4R2R A;  1ZAA C;  2G7H A;  2MC6 A;  2YTJ A;  2LCE A;  1P47 A;  3EPH A;  1MGT A;  2EN1 A;  2K7I A;  4DKK A;  4LFB E;  2EPC A;  2YTN A;  1EKZ A;  2RTX A;  1EH6 A;  4JI8 E;  3C6M A;  2YTF A;  1NEI A;  2JOX A;  5A6A A;  2V87 A;  2MDG A;  3T1H E;  1HR0 E;  2KHX A;  4GKK E;  2WZO A;  2NUF A;  1WHQ A;  1ZU1 A;  1X49 A;  4GKJ E;  5KL2 A;  3JU0 A;  2R76 A;  4B3M E;  4NXN E;  4DMI A;  4WYQ B;  5KL3 A;  1IQO A;  4F9B B;  2Q8U A;  4MLQ A;  3J81 C;  2PRT A;  2EMA A;  3JAM C;  2EM2 A;  4IJD A;  4OOG C;  3IWC A;  3HPZ A;  4X8W A;  1T4O A;  2DRP A;  2UU9 E;  1TN9 A;  1PJQ A;  4LU9 A;  4ZYG A;  4R2E A;  3BBG A;  2UXD E;  2HGH A;  3F6G A;  1FKA E;  4O5G A;  2L2M A;  4MLV A;  2RS6 A;  4LFA E;  2VRD A;  2BBG A;  1N33 E;  5IXM B;  2B9D A;  1YSA C;  1TF3 A;  3VYX A;  2GLI A;  2EMF A;  4LFC E;  2EOR A;  1BB8 A;  2UUB E;  2EL6 A;  1HNW E;  3KZZ A;  5T6J A;  4TUI A;  2EOO A;  4DR2 E;  2EPZ A;  2YTI A;  1T4N A;  4P78 A;  1GZ6 A;  2EMB A;  2ENC A;  1G2F C;  4LF8 E;  5A2Q C;  3KWR A;  2YTQ A;  1A1H A;  2UXC E;  3L00 A;  2EE8 A;  1UIL A;  1XNR E;  4R2D A;  2EPM X;  1YUI A;  1YYO A;  2YPN A;  4JI2 E;  2LJH A;  2V8Q B;  1DQ3 A;  4BMJ A;  3EPL A;  1EH8 A;  1XMQ E;  4L5N C;  3HXL A;  2LJU A;  2LO3 A;  1B69 A;  4F9C B;  1ZBT A;  2JP9 A;  1UN6 B;  5A6B A;  3VHT B;  2N8X A;  4JV5 E;  2LE2 A;  1G2D C;  1RQ0 A;  4BHB A;  5A69 A;  5LLQ A;  2FGG A;  3BGH A;  3KZY A;  3ADG A;  2MDR A;  2EM6 A;  4R8O A;  2EJ4 A;  2EPX A;  4B3S E;  2ENA A;  1X5W A;  4JI7 E;  4JI3 E;  4R2S A;  2V86 A;  2L3J A;  4WX9 A;  3EQ1 A;  4O4K A;  2M1S A;  4JI5 E;  4LF5 E;  2YRM A;  4NZV A;  4WSP A;  2JYA A;  1IBK E;  4LTY A;  3H09 A;  2YTP A;  2HC5 A;  5AE3 A;  4DUY E;  2CT1 A;  2EL4 A;  1A1G A;  4HTG A;  1PKP A;  2FV4 B;  2YU8 A;  4L8N A;  1DGC A;  2VQE E;  4DV3 E;  4DV7 E; 
#chains in the Genus database with same CATH homology
 2I9I A;  3BGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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