2I9IA

Crystal structure of helicobacter pylori protein hp0492
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
221
structure length
221
Chain Sequence
ERMKTSSEHVTPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELTKENIDKYREAIDRMKGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Helicobacter pylori
publication title Crystal Structure of Helicobacter pylori hypothetical protein O25234
rcsb
molecule keywords Hypothetical protein
total genus 79
structure length 221
sequence length 221
ec nomenclature
pdb deposition date 2006-09-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.180 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Putative neuraminyllactose-binding hemagglutinin homolog like domain 2i9iA00
3BGHA 2I9IA
chains in the Genus database with same CATH superfamily
4DV6E 2UUCE 2L92A 2CSHA 2EPCA 2EP3A 3J7Yp 2YTJA 4IJDA 1A1HA 1TN9A 1FJGE 1YYWA 4X8WA 2YZTA 4DV5E 2EMWA 2H36X 2HHHE 2EM9A 2EOYA 2L8TA 2EM4A 1JK1A 2EM0A 1YFHA 2JPAA 4OOGC 1QNTA 1TF6A 1BBOA 2KONA 4DR5E 3BIDA 2UUAE 4M0VA 1HNXE 1BBGA 1ZR9A 2DMYA 1ZBTA 4DMIA 2LT7A 1J5EE 4LF8E 4Q35B 2EN2A 2HC5A 2YRKA 1B69A 2L33A 2YWQA 3L00A 3LMLA 4R2PA 4DV7E 2DIXA 2YTPA 4M30A 3KZZA 4OX9E 2WBUA 2BB8A 4Q28A 3EPJA 2DRPA 2M9AA 5KL5A 4BHBA 2JP9A 4JV5E 3THOB 4X64E 5T6JA 3MHHC 1UBDC 2EM3A 4F2JC 3M99B 3FIGA 3IWDA 2EMLA 1P47A 1A1IA 2CTDA 5KL6A 4WFTA 4B3SE 4X62E 2L3CA 4ZYHA 5AE1A 4DV2E 1G2DC 2JVAA 2R76A 4GEQB 3EPHA 5AC5A 1J26A 2EN8A 5AE3A 4KWYA 2PRTA 4DV0E 2EWLA 4BBYA 3LLHA 1HR0E 2EPOA 4NHRA 4LFCE 3EQ1A 2I9IA 5AASA 4FK5C 5F3WA 1N34E 2LJHA 1YYKA 3QG5C 2DSYA 2EM7A 2LO3A 3HQ1A 4X66E 2EMYA 4BCAA 1STUA 2RSMA 2FV4B 4WSGA 2RS7A 4JYAE 1X5WA 4GKKE 4K0KE 2HJJA 2NA2A 2LBSB 2KHXA 2YTOA 4IS1C 2L2KB 4LF5E 3EPLA 5BR8E 4R2CA 2EN3A 4TUGA 2DLKA 5KL2A 2JWOA 1O0WA 2M4IA 2DMIA 2WBTA 3VHTB 3UK3C 1YUJA 2YTQA 2EMIA 2JY9A 4LFAE 4NZVA 1XNRE 1N36E 4WXDA 1T4OA 2EORA 2V89A 3AUZA 2RTXA 4NXNE 4LF4E 3ADIA 3C6KA 2V85A 2EPLX 4BS9A 3THNA 1WHNA 5A69A 2ENCA 3C6MA 4JI2E 2EMFA 1QU6A 1IBLE 2ELYA 3JU0A 2YSOA 2RS6A 2L3JA 4F6MA 2EOFA 2N8XA 4TUIA 4LF6E 2YTGA 1RQ0A 4ZYDA 2N3HA 2LV2A 1T4NA 2I13A 4JI3E 1KYQA 2LTRA 1DGCA 4R2EA 2F8BA 3HPZA 3IWCA 5KL4A 2EOIA 2FGGA 4JI6E 4DR6E 2EN7A 3F6HA 4B3TE 2YPNA 2EM6A 2LUPB 5LL6R 4X65E 2EMCA 4RHBB 1A1FA 2E72A 5KL7A 1IBKE 1UHZA 3DJWA 2LVHA 2V83A 4O24A 2EMKA 2GLIA 1X6EA 1DI2A 2ODRD 2NUGA 4R2AA 4WX9A 2L2MA 2YT4A 2F4VE 4NXME 5A6AA 1N33E 2EMGA 1WHQA 4R2DA 2ZM6E 2UUBE 1HNZE 3ECRA 3J81C 2NUFA 5LLQA 2EOXA 1KJKA 2L6MA 1X6HA 2WZOA 4F9BB 4B3ME 2EMBA 1TF3A 1PKPA 2GHFA 3HXLA 5A6BA 4ZYGA 2EMXA 2LUQA 3JAMC 3VYXA 4R2RA 2LTSA 1NEIA 1YZ9A 2UXBE 1RC7A 2JR1A 1XNQE 2EPRA 1LLMC 2LRSA 2J7JA 2R1FA 1X48A 2EN4A 5AC4A 4F6NA 2EN1A 4X9JA 2RSIA 1SFEA 3T1YE 4WSPA 1NCSA 2VRDA 3JTZA 1EH8A 2K4VA 1I94E 4HEIA 4DR3E 2EOZA 2EM2A 2A25A 2EPXA 5FLXC 4KZSA 4GKJE 1N3GA 4DKKA 5A6KA 1X6FA 1ZAAC 1DQ3A 2YRHA 4BC7A 2BBGA 3P1XA 2ADRA 4WXCA 2WCC3 2N3GA 2G7HA 2EOJA 3DF6A 1PJTA 1X49A 4DR7E 5AE2A 2V86A 1ZU1A 2EL4A 2YTIA 4N4RB 2RQLA 2NABA 1GZ6A 4O4KA 2L2NA 2LCEA 4WPYA 2V88A 1F2IG 2GPIA 2EE8A 2EL6A 2LMZA 2YRMA 4ZYEA 2EMZA 2YTNA 2UU9E 2YU8A 2MC6A 2E5LE 2EPKX 3K6QA 2JYAA 5TSEA 4DR2E 4LFBE 5LMUE 2VE7C 2EZ6A 2B9DA 4LF9E 2MC5A 1WJPA 3HPSA 3HTXA 1UILA 2EJ4A 2LE2A 2M7QA 3T1HE 3MHSC 2EM5A 1A1GA 3ADGA 3VK6A 2EMHA 2JOXA 4P78A 3ADLA 1T39A 3J7AG 2FTXB 2ODRC 4LTYA 4F9AB 1X3CA 1AH5A 1ZBQA 4JI7E 4L8NA 2EOEA 1BB8A 4YHHE 2EN6A 2YU5A 4BC9A 4YY3E 3EPKA 2EQ1A 2UXCE 2EPPA 2EQ0A 2JXPA 2B7TA 2YTFA 2EPNA 1GTKA 1A1JA 4AQYE 1MGTA 3BF2A 2K7IA 2DB2A 2EPMX 2DLQA 4HTGA 1EH7A 3RMPA 4O43A 4RH8A 2EOHA 5A6JA 2B7VA 2WBSA 1XMOE 2B3TB 2V87A 1AAYA 3BGHA 1UN6B 2EPUA 2M1SA 3VYYA 2E1MA 1L4SA 2MKNA 3C4BA 1PDAA 2MDRA 4J8ZA 4O5GA 3TQMA 1WXRA 2VQFE 4F54A 4WYQB 1YPNA 2RPCA 2EQ3A 2CPNA 3OTOE 5A2QC 2EOSA 4JI5E 4KHPE 4R2SA 2JOBA 4DR4E 1A1KA 1X47A 1N32E 3KZYA 3MSWA 1T4LB 3BBGA 5IXMB 4GZNC 4DR1E 1IMUA 4LU9A 1GQEA 2EMAA 4P7DA 4JI0E 4BHCA 1SR9A 1Z1BA 2EL5A 1EKZA 2MKDA 3J80C 1JK2A 4B3RE 5ADZA 1PJSA 4DV4E 2YTDA 4MLVA 3C4TA 3AV0A 5IWAE 1IQSA 4JI1E 2EPZA 3IWBA 2LJUA 3OMLA 4R03A 1YSAC 2DGCA 2EOOA 2EPAA 2KOUA 2ENHA 2YTEA 4R8OA 4I8OA 1WRJA 1YUIA 5IT9C 5IV8B 2UXDE 1XMQE 2EOQA 2HGHA 2D9HA 2V8QB 4LF7E 2EM8A 1IBME 1RMDA 4DV1E 1MEYC 4M9VC 4DUZE 2MDGA 2ENAA 4DUYE 4MLQA 2CT1A 2NUEA 3H09A 4L5NC 4F9CB 1G2FC 3ADJA 4JI8E 2ELZA 1PJQA 5KL3A 1EH6A 1HNWE 4R2QA 2EOMA 5LMNE 3KWRA 4BMJA 4DV3E 2VQEE 1FKAE 2IHR1 3F6GA 4JI4E 1YYOA 5DNYA 4M2ZA 2VF1A 5CFFE 1T38A 1IQOA 2Q8UA 5A6BD 2YSPA 1A1LA 3ZOQB
chains in the Genus database with same CATH topology
3BGHA 2I9IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BGH A;  2I9I A; 
#chains in the Genus database with same CATH topology
 4DV6 E;  2UUC E;  2L92 A;  2CSH A;  2EPC A;  2EP3 A;  3J7Y p;  2YTJ A;  4IJD A;  1A1H A;  1TN9 A;  1FJG E;  1YYW A;  4X8W A;  2YZT A;  4DV5 E;  2EMW A;  2H36 X;  2HHH E;  2EM9 A;  2EOY A;  2L8T A;  2EM4 A;  1JK1 A;  2EM0 A;  1YFH A;  2JPA A;  4OOG C;  1QNT A;  1TF6 A;  1BBO A;  2KON A;  4DR5 E;  3BID A;  2UUA E;  4M0V A;  1HNX E;  1BBG A;  1ZR9 A;  2DMY A;  1ZBT A;  4DMI A;  2LT7 A;  1J5E E;  4LF8 E;  4Q35 B;  2EN2 A;  2HC5 A;  2YRK A;  1B69 A;  2L33 A;  2YWQ A;  3L00 A;  3LML A;  4R2P A;  4DV7 E;  2DIX A;  2YTP A;  4M30 A;  3KZZ A;  4OX9 E;  2WBU A;  2BB8 A;  4Q28 A;  3EPJ A;  2DRP A;  2M9A A;  5KL5 A;  4BHB A;  2JP9 A;  4JV5 E;  3THO B;  4X64 E;  5T6J A;  3MHH C;  1UBD C;  2EM3 A;  4F2J C;  3M99 B;  3FIG A;  3IWD A;  2EML A;  1P47 A;  1A1I A;  2CTD A;  5KL6 A;  4WFT A;  4B3S E;  4X62 E;  2L3C A;  4ZYH A;  5AE1 A;  4DV2 E;  1G2D C;  2JVA A;  2R76 A;  4GEQ B;  3EPH A;  5AC5 A;  1J26 A;  2EN8 A;  5AE3 A;  4KWY A;  2PRT A;  4DV0 E;  2EWL A;  4BBY A;  3LLH A;  1HR0 E;  2EPO A;  4NHR A;  4LFC E;  3EQ1 A;  2I9I A;  5AAS A;  4FK5 C;  5F3W A;  1N34 E;  2LJH A;  1YYK A;  3QG5 C;  2DSY A;  2EM7 A;  2LO3 A;  3HQ1 A;  4X66 E;  2EMY A;  4BCA A;  1STU A;  2RSM A;  2FV4 B;  4WSG A;  2RS7 A;  4JYA E;  1X5W A;  4GKK E;  4K0K E;  2HJJ A;  2NA2 A;  2LBS B;  2KHX A;  2YTO A;  4IS1 C;  2L2K B;  4LF5 E;  3EPL A;  5BR8 E;  4R2C A;  2EN3 A;  4TUG A;  2DLK A;  5KL2 A;  2JWO A;  1O0W A;  2M4I A;  2DMI A;  2WBT A;  3VHT B;  3UK3 C;  1YUJ A;  2YTQ A;  2EMI A;  2JY9 A;  4LFA E;  4NZV A;  1XNR E;  1N36 E;  4WXD A;  1T4O A;  2EOR A;  2V89 A;  3AUZ A;  2RTX A;  4NXN E;  4LF4 E;  3ADI A;  3C6K A;  2V85 A;  2EPL X;  4BS9 A;  3THN A;  1WHN A;  5A69 A;  2ENC A;  3C6M A;  4JI2 E;  2EMF A;  1QU6 A;  1IBL E;  2ELY A;  3JU0 A;  2YSO A;  2RS6 A;  2L3J A;  4F6M A;  2EOF A;  2N8X A;  4TUI A;  4LF6 E;  2YTG A;  1RQ0 A;  4ZYD A;  2N3H A;  2LV2 A;  1T4N A;  2I13 A;  4JI3 E;  1KYQ A;  2LTR A;  1DGC A;  4R2E A;  2F8B A;  3HPZ A;  3IWC A;  5KL4 A;  2EOI A;  2FGG A;  4JI6 E;  4DR6 E;  2EN7 A;  3F6H A;  4B3T E;  2YPN A;  2EM6 A;  2LUP B;  5LL6 R;  4X65 E;  2EMC A;  4RHB B;  1A1F A;  2E72 A;  5KL7 A;  1IBK E;  1UHZ A;  3DJW A;  2LVH A;  2V83 A;  4O24 A;  2EMK A;  2GLI A;  1X6E A;  1DI2 A;  2ODR D;  2NUG A;  4R2A A;  4WX9 A;  2L2M A;  2YT4 A;  2F4V E;  4NXM E;  5A6A A;  1N33 E;  2EMG A;  1WHQ A;  4R2D A;  2ZM6 E;  2UUB E;  1HNZ E;  3ECR A;  3J81 C;  2NUF A;  5LLQ A;  2EOX A;  1KJK A;  2L6M A;  1X6H A;  2WZO A;  4F9B B;  4B3M E;  2EMB A;  1TF3 A;  1PKP A;  2GHF A;  3HXL A;  5A6B A;  4ZYG A;  2EMX A;  2LUQ A;  3JAM C;  3VYX A;  4R2R A;  2LTS A;  1NEI A;  1YZ9 A;  2UXB E;  1RC7 A;  2JR1 A;  1XNQ E;  2EPR A;  1LLM C;  2LRS A;  2J7J A;  2R1F A;  1X48 A;  2EN4 A;  5AC4 A;  4F6N A;  2EN1 A;  4X9J A;  2RSI A;  1SFE A;  3T1Y E;  4WSP A;  1NCS A;  2VRD A;  3JTZ A;  1EH8 A;  2K4V A;  1I94 E;  4HEI A;  4DR3 E;  2EOZ A;  2EM2 A;  2A25 A;  2EPX A;  5FLX C;  4KZS A;  4GKJ E;  1N3G A;  4DKK A;  5A6K A;  1X6F A;  1ZAA C;  1DQ3 A;  2YRH A;  4BC7 A;  2BBG A;  3P1X A;  2ADR A;  4WXC A;  2WCC 3;  2N3G A;  2G7H A;  2EOJ A;  3DF6 A;  1PJT A;  1X49 A;  4DR7 E;  5AE2 A;  2V86 A;  1ZU1 A;  2EL4 A;  2YTI A;  4N4R B;  2RQL A;  2NAB A;  1GZ6 A;  4O4K A;  2L2N A;  2LCE A;  4WPY A;  2V88 A;  1F2I G;  2GPI A;  2EE8 A;  2EL6 A;  2LMZ A;  2YRM A;  4ZYE A;  2EMZ A;  2YTN A;  2UU9 E;  2YU8 A;  2MC6 A;  2E5L E;  2EPK X;  3K6Q A;  2JYA A;  5TSE A;  4DR2 E;  4LFB E;  5LMU E;  2VE7 C;  2EZ6 A;  2B9D A;  4LF9 E;  2MC5 A;  1WJP A;  3HPS A;  3HTX A;  1UIL A;  2EJ4 A;  2LE2 A;  2M7Q A;  3T1H E;  3MHS C;  2EM5 A;  1A1G A;  3ADG A;  3VK6 A;  2EMH A;  2JOX A;  4P78 A;  3ADL A;  1T39 A;  3J7A G;  2FTX B;  2ODR C;  4LTY A;  4F9A B;  1X3C A;  1AH5 A;  1ZBQ A;  4JI7 E;  4L8N A;  2EOE A;  1BB8 A;  4YHH E;  2EN6 A;  2YU5 A;  4BC9 A;  4YY3 E;  3EPK A;  2EQ1 A;  2UXC E;  2EPP A;  2EQ0 A;  2JXP A;  2B7T A;  2YTF A;  2EPN A;  1GTK A;  1A1J A;  4AQY E;  1MGT A;  3BF2 A;  2K7I A;  2DB2 A;  2EPM X;  2DLQ A;  4HTG A;  1EH7 A;  3RMP A;  4O43 A;  4RH8 A;  2EOH A;  5A6J A;  2B7V A;  2WBS A;  1XMO E;  2B3T B;  2V87 A;  1AAY A;  3BGH A;  1UN6 B;  2EPU A;  2M1S A;  3VYY A;  2E1M A;  1L4S A;  2MKN A;  3C4B A;  1PDA A;  2MDR A;  4J8Z A;  4O5G A;  3TQM A;  1WXR A;  2VQF E;  4F54 A;  4WYQ B;  1YPN A;  2RPC A;  2EQ3 A;  2CPN A;  3OTO E;  5A2Q C;  2EOS A;  4JI5 E;  4KHP E;  4R2S A;  2JOB A;  4DR4 E;  1A1K A;  1X47 A;  1N32 E;  3KZY A;  3MSW A;  1T4L B;  3BBG A;  5IXM B;  4GZN C;  4DR1 E;  1IMU A;  4LU9 A;  1GQE A;  2EMA A;  4P7D A;  4JI0 E;  4BHC A;  1SR9 A;  1Z1B A;  2EL5 A;  1EKZ A;  2MKD A;  3J80 C;  1JK2 A;  4B3R E;  5ADZ A;  1PJS A;  4DV4 E;  2YTD A;  4MLV A;  3C4T A;  3AV0 A;  5IWA E;  1IQS A;  4JI1 E;  2EPZ A;  3IWB A;  2LJU A;  3OML A;  4R03 A;  1YSA C;  2DGC A;  2EOO A;  2EPA A;  2KOU A;  2ENH A;  2YTE A;  4R8O A;  4I8O A;  1WRJ A;  1YUI A;  5IT9 C;  5IV8 B;  2UXD E;  1XMQ E;  2EOQ A;  2HGH A;  2D9H A;  2V8Q B;  4LF7 E;  2EM8 A;  1IBM E;  1RMD A;  4DV1 E;  1MEY C;  4M9V C;  4DUZ E;  2MDG A;  2ENA A;  4DUY E;  4MLQ A;  2CT1 A;  2NUE A;  3H09 A;  4L5N C;  4F9C B;  1G2F C;  3ADJ A;  4JI8 E;  2ELZ A;  1PJQ A;  5KL3 A;  1EH6 A;  1HNW E;  4R2Q A;  2EOM A;  5LMN E;  3KWR A;  4BMJ A;  4DV3 E;  2VQE E;  1FKA E;  2IHR 1;  3F6G A;  4JI4 E;  1YYO A;  5DNY A;  4M2Z A;  2VF1 A;  5CFF E;  1T38 A;  1IQO A;  2Q8U A;  5A6B D;  2YSP A;  1A1L A;  3ZOQ B; 
#chains in the Genus database with same CATH homology
 3BGH A;  2I9I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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