3TQMA

Structure of an ribosomal subunit interface protein from coxiella burnetii
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
91
structure length
91
Chain Sequence
MHIQMTGQGVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVKLPGSTINAQAESDDMYKTVDLLMHKLETQLSKYKAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Ribosome-associated factor Y
publication title Structural genomics for drug design against the pathogen Coxiella burnetii.
pubmed doi rcsb
source organism Coxiella burnetii
total genus 24
structure length 91
sequence length 91
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 3tqmA00
2RQLA 1L4SA 3TQMA 2YWQA 1IMUA 1N3GA 4HEIA
chains in the Genus database with same CATH superfamily
1YZ9A 2V88A 4DV3E 2EN6A 4B3RE 4Q28A 5A6BA 3DJWA 1UN6B 2R1FA 2ELZA 1A1LA 1FKAE 3F6GA 4GZNC 3UK3C 4O4KA 4KWYA 3KWRA 1YUJA 2EM8A 2EOEA 3T1HE 2GHFA 2FGGA 4F6NA 2EPUA 1KJKA 2KHXA 2EORA 2EMZA 4IS1C 2K4VA 3JU0A 2LJUA 4LU9A 5ADZA 2L2MA 2EOHA 2EN7A 2HJJA 2UUBE 2EOYA 4LTYA 2RS7A 2UXBE 2V86A 4BCAA 5IT9C 2EM9A 2ODRD 4K0KE 2CTDA 4DV1E 3THNA 1I94E 3ZOQB 1KYQA 1DGCA 1DI2A 2B7TA 1B69A 1HNZE 2ENHA 4R2DA 1G2DC 4DR7E 4LF8E 4X62E 1AAYA 4X64E 1J5EE 3JTZA 3J7Yp 2N3GA 4DV0E 3ADLA 3HPZA 3OTOE 2YTFA 3LLHA 2ENAA 2G7HA 2ODRC 4L5NC 3MHSC 1X47A 2V83A 1SR9A 1P47A 2RQLA 4DR1E 2A25A 3IWBA 2L2NA 4N4RB 2EPCA 2EPOA 3ADJA 2VRDA 5LMNE 2MC5A 4RH8A 4P78A 4F9CB 2EQ0A 2HHHE 2M1SA 2E72A 4IJDA 2EL6A 5IWAE 2UUCE 4BC7A 3ADGA 4JI2E 4WFTA 3AV0A 3VHTB 4DKKA 1O0WA 2EM4A 1IQOA 2ZM6E 2MKNA 4R2PA 1YYKA 1EH8A 2YRKA 4FK5C 2EN1A 2EMKA 5AE1A 2LMZA 5AC5A 4TUGA 4BC9A 3DF6A 1RMDA 3BF2A 4YY3E 2I9IA 2N3HA 1PKPA 3FIGA 1X49A 4X9JA 1MEYC 2EOXA 2DRPA 2EOIA 4LF7E 4OX9E 2KOUA 2EN4A 2YTJA 1Z1BA 2V89A 2EE8A 4DUYE 2EPKX 4ZYEA 4DV7E 4NZVA 2EOSA 2HC5A 1N34E 4JI0E 2LE2A 3EPHA 2MKDA 2WBTA 2E5LE 2YTOA 5AC4A 5A6KA 4F54A 1A1GA 4WXDA 5IXMB 2YSOA 2JVAA 5KL5A 2MC6A 3F6HA 2JYAA 4GEQB 1A1IA 1BBOA 3C6KA 4DR6E 4WYQB 4X65E 2R76A 2YTGA 2EOMA 1ZBTA 3THOB 4BS9A 1X3CA 2NA2A 2EMHA 3EPKA 2FTXB 4B3SE 1WHQA 2HGHA 2LT7A 1X48A 4ZYDA 4JYAE 5A6AA 2WZOA 4M9VC 2VF1A 1XNQE 1ZU1A 2EN2A 2M7QA 2EPMX 4JV5E 1TF6A 2CT1A 2UU9E 4M30A 1N3GA 2JWOA 2M4IA 3J80C 4WPYA 3C6MA 1GQEA 2EM3A 1J26A 2EMGA 2LUQA 2EM5A 2L3JA 1EKZA 4DV5E 1XNRE 2B9DA 2EMFA 1HNXE 3VYXA 2Q8UA 4WXCA 4BMJA 5KL4A 4NXME 2K7IA 1WJPA 4MLVA 4LF6E 2EM2A 4B3ME 2BBGA 1YPNA 1WHNA 2VE7C 1T4OA 3ECRA 5FLXC 2I13A 2YSPA 1FJGE 2EL5A 2LJHA 2NUGA 2LRSA 2L33A 2DGCA 1PJTA 4RHBB 1L4SA 2UUAE 2E1MA 3ADIA 2B3TB 1YYOA 2RPCA 2JOBA 2VQFE 4DR5E 5A2QC 3J81C 2L3CA 2LCEA 1QU6A 2DMYA 2YTNA 1BBGA 1XMQE 3EPLA 4HTGA 2NABA 2LO3A 1RC7A 2V87A 1WRJA 4LF9E 4GKJE 2EN8A 2L6MA 2IHR1 1QNTA 2EPXA 2FV4B 2EOZA 2V85A 4M0VA 1UILA 4DR3E 4JI1E 3K6QA 3J7AG 2EPAA 1T38A 1T4NA 4KHPE 2EPPA 5LL6R 2EOJA 1T39A 4WX9A 3BIDA 2JY9A 5KL2A 2VQEE 2MDRA 2MDGA 2EL4A 2ELYA 4R2AA 1TF3A 2LTRA 2JP9A 1YUIA 1G2FC 1T4LB 1IBKE 1EH7A 4JI5E 2EM6A 2EMLA 5LLQA 3BBGA 4WSPA 4JI8E 4R2QA 3HQ1A 4TUIA 2LV2A 2V8QB 4B3TE 1X6EA 4ZYHA 2YPNA 2EMYA 1ZAAC 2PRTA 1WXRA 3JAMC 4AQYE 3EPJA 2YU5A 2B7VA 3MSWA 5AE2A 2DMIA 5AASA 3KZZA 4R03A 3QG5C 4WSGA 4BBYA 4DMIA 1STUA 3IWCA 4ZYGA 3M99B 3TQMA 1YYWA 4P7DA 2EPLX 1UBDC 4O43A 2EMIA 3RMPA 2WBUA 2YZTA 3HPSA 2BB8A 5DNYA 2WCC3 1JK2A 2YRMA 2NUFA 4Q35B 2EMBA 1N33E 2EMWA 2WBSA 4DV4E 1PJSA 1ZR9A 4GKKE 2EPNA 2LVHA 1GTKA 2LBSB 1AH5A 5TSEA 4JI3E 2EJ4A 2RSMA 4MLQA 2EOQA 1IMUA 4LFCE 5KL6A 2CSHA 1IQSA 1X6FA 4J8ZA 2EM7A 4LF5E 1MGTA 1A1HA 4X8WA 4BHBA 2EMCA 3P1XA 2N8XA 1HR0E 1JK1A 2YWQA 4R2CA 4NHRA 1X5WA 1DQ3A 5T6JA 4LFBE 5CFFE 1BB8A 2EM0A 2DIXA 3HXLA 4F9AB 2EOOA 1XMOE 4DV2E 4BHCA 1A1KA 2EP3A 4NXNE 2RS6A 3VK6A 2D9HA 1GZ6A 2DB2A 2KONA 3OMLA 2JPAA 5KL7A 2UXDE 2EMAA 2L2KB 3HTXA 2YTQA 4R8OA 1SFEA 2RSIA 4LF4E 3L00A 2RTXA 3T1YE 1NEIA 4YHHE 3IWDA 2EWLA 4O24A 2H36X 5A6BD 4DUZE 5AE3A 1NCSA 4OOGC 2L92A 1TN9A 2JR1A 5F3WA 4JI4E 2YTEA 1N32E 4KZSA 2DLKA 5KL3A 2EQ1A 2LUPB 1RQ0A 1EH6A 4X66E 4JI6E 2EZ6A 5IV8B 2YRHA 3C4BA 4JI7E 2CPNA 2EOFA 4HEIA 2EN3A 2LTSA 1HNWE 1N36E 2L8TA 2EPRA 4DR2E 2EPZA 4F9BB 2ADRA 4LFAE 3LMLA 1LLMC 2M9AA 4DR4E 1F2IG 2ENCA 4F6MA 3KZYA 1UHZA 1IBME 4M2ZA 4DV6E 2GPIA 3EQ1A 5LMUE 1ZBQA 2YT4A 4R2RA 5A6JA 1YSAC 3VYYA 1YFHA 2EMXA 2YTPA 2EQ3A 1X6HA 2F8BA 2F4VE 1PJQA 5BR8E 2GLIA 2UXCE 3BGHA 2YTDA 1PDAA 2NUEA 2DSYA 2JXPA 4L8NA 1IBLE 1A1FA 2YU8A 2YTIA 3AUZA 3H09A 2JOXA 4I8OA 4R2SA 2DLQA 4F2JC 4O5GA 3C4TA 1A1JA 3MHHC 5A69A 2J7JA 4R2EA
chains in the Genus database with same CATH topology
2RQLA 1L4SA 3TQMA 2YWQA 1IMUA 1N3GA 4HEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQL A;  1L4S A;  3TQM A;  2YWQ A;  1IMU A;  1N3G A;  4HEI A; 
#chains in the Genus database with same CATH topology
 1YZ9 A;  2V88 A;  4DV3 E;  2EN6 A;  4B3R E;  4Q28 A;  5A6B A;  3DJW A;  1UN6 B;  2R1F A;  2ELZ A;  1A1L A;  1FKA E;  3F6G A;  4GZN C;  3UK3 C;  4O4K A;  4KWY A;  3KWR A;  1YUJ A;  2EM8 A;  2EOE A;  3T1H E;  2GHF A;  2FGG A;  4F6N A;  2EPU A;  1KJK A;  2KHX A;  2EOR A;  2EMZ A;  4IS1 C;  2K4V A;  3JU0 A;  2LJU A;  4LU9 A;  5ADZ A;  2L2M A;  2EOH A;  2EN7 A;  2HJJ A;  2UUB E;  2EOY A;  4LTY A;  2RS7 A;  2UXB E;  2V86 A;  4BCA A;  5IT9 C;  2EM9 A;  2ODR D;  4K0K E;  2CTD A;  4DV1 E;  3THN A;  1I94 E;  3ZOQ B;  1KYQ A;  1DGC A;  1DI2 A;  2B7T A;  1B69 A;  1HNZ E;  2ENH A;  4R2D A;  1G2D C;  4DR7 E;  4LF8 E;  4X62 E;  1AAY A;  4X64 E;  1J5E E;  3JTZ A;  3J7Y p;  2N3G A;  4DV0 E;  3ADL A;  3HPZ A;  3OTO E;  2YTF A;  3LLH A;  2ENA A;  2G7H A;  2ODR C;  4L5N C;  3MHS C;  1X47 A;  2V83 A;  1SR9 A;  1P47 A;  2RQL A;  4DR1 E;  2A25 A;  3IWB A;  2L2N A;  4N4R B;  2EPC A;  2EPO A;  3ADJ A;  2VRD A;  5LMN E;  2MC5 A;  4RH8 A;  4P78 A;  4F9C B;  2EQ0 A;  2HHH E;  2M1S A;  2E72 A;  4IJD A;  2EL6 A;  5IWA E;  2UUC E;  4BC7 A;  3ADG A;  4JI2 E;  4WFT A;  3AV0 A;  3VHT B;  4DKK A;  1O0W A;  2EM4 A;  1IQO A;  2ZM6 E;  2MKN A;  4R2P A;  1YYK A;  1EH8 A;  2YRK A;  4FK5 C;  2EN1 A;  2EMK A;  5AE1 A;  2LMZ A;  5AC5 A;  4TUG A;  4BC9 A;  3DF6 A;  1RMD A;  3BF2 A;  4YY3 E;  2I9I A;  2N3H A;  1PKP A;  3FIG A;  1X49 A;  4X9J A;  1MEY C;  2EOX A;  2DRP A;  2EOI A;  4LF7 E;  4OX9 E;  2KOU A;  2EN4 A;  2YTJ A;  1Z1B A;  2V89 A;  2EE8 A;  4DUY E;  2EPK X;  4ZYE A;  4DV7 E;  4NZV A;  2EOS A;  2HC5 A;  1N34 E;  4JI0 E;  2LE2 A;  3EPH A;  2MKD A;  2WBT A;  2E5L E;  2YTO A;  5AC4 A;  5A6K A;  4F54 A;  1A1G A;  4WXD A;  5IXM B;  2YSO A;  2JVA A;  5KL5 A;  2MC6 A;  3F6H A;  2JYA A;  4GEQ B;  1A1I A;  1BBO A;  3C6K A;  4DR6 E;  4WYQ B;  4X65 E;  2R76 A;  2YTG A;  2EOM A;  1ZBT A;  3THO B;  4BS9 A;  1X3C A;  2NA2 A;  2EMH A;  3EPK A;  2FTX B;  4B3S E;  1WHQ A;  2HGH A;  2LT7 A;  1X48 A;  4ZYD A;  4JYA E;  5A6A A;  2WZO A;  4M9V C;  2VF1 A;  1XNQ E;  1ZU1 A;  2EN2 A;  2M7Q A;  2EPM X;  4JV5 E;  1TF6 A;  2CT1 A;  2UU9 E;  4M30 A;  1N3G A;  2JWO A;  2M4I A;  3J80 C;  4WPY A;  3C6M A;  1GQE A;  2EM3 A;  1J26 A;  2EMG A;  2LUQ A;  2EM5 A;  2L3J A;  1EKZ A;  4DV5 E;  1XNR E;  2B9D A;  2EMF A;  1HNX E;  3VYX A;  2Q8U A;  4WXC A;  4BMJ A;  5KL4 A;  4NXM E;  2K7I A;  1WJP A;  4MLV A;  4LF6 E;  2EM2 A;  4B3M E;  2BBG A;  1YPN A;  1WHN A;  2VE7 C;  1T4O A;  3ECR A;  5FLX C;  2I13 A;  2YSP A;  1FJG E;  2EL5 A;  2LJH A;  2NUG A;  2LRS A;  2L33 A;  2DGC A;  1PJT A;  4RHB B;  1L4S A;  2UUA E;  2E1M A;  3ADI A;  2B3T B;  1YYO A;  2RPC A;  2JOB A;  2VQF E;  4DR5 E;  5A2Q C;  3J81 C;  2L3C A;  2LCE A;  1QU6 A;  2DMY A;  2YTN A;  1BBG A;  1XMQ E;  3EPL A;  4HTG A;  2NAB A;  2LO3 A;  1RC7 A;  2V87 A;  1WRJ A;  4LF9 E;  4GKJ E;  2EN8 A;  2L6M A;  2IHR 1;  1QNT A;  2EPX A;  2FV4 B;  2EOZ A;  2V85 A;  4M0V A;  1UIL A;  4DR3 E;  4JI1 E;  3K6Q A;  3J7A G;  2EPA A;  1T38 A;  1T4N A;  4KHP E;  2EPP A;  5LL6 R;  2EOJ A;  1T39 A;  4WX9 A;  3BID A;  2JY9 A;  5KL2 A;  2VQE E;  2MDR A;  2MDG A;  2EL4 A;  2ELY A;  4R2A A;  1TF3 A;  2LTR A;  2JP9 A;  1YUI A;  1G2F C;  1T4L B;  1IBK E;  1EH7 A;  4JI5 E;  2EM6 A;  2EML A;  5LLQ A;  3BBG A;  4WSP A;  4JI8 E;  4R2Q A;  3HQ1 A;  4TUI A;  2LV2 A;  2V8Q B;  4B3T E;  1X6E A;  4ZYH A;  2YPN A;  2EMY A;  1ZAA C;  2PRT A;  1WXR A;  3JAM C;  4AQY E;  3EPJ A;  2YU5 A;  2B7V A;  3MSW A;  5AE2 A;  2DMI A;  5AAS A;  3KZZ A;  4R03 A;  3QG5 C;  4WSG A;  4BBY A;  4DMI A;  1STU A;  3IWC A;  4ZYG A;  3M99 B;  3TQM A;  1YYW A;  4P7D A;  2EPL X;  1UBD C;  4O43 A;  2EMI A;  3RMP A;  2WBU A;  2YZT A;  3HPS A;  2BB8 A;  5DNY A;  2WCC 3;  1JK2 A;  2YRM A;  2NUF A;  4Q35 B;  2EMB A;  1N33 E;  2EMW A;  2WBS A;  4DV4 E;  1PJS A;  1ZR9 A;  4GKK E;  2EPN A;  2LVH A;  1GTK A;  2LBS B;  1AH5 A;  5TSE A;  4JI3 E;  2EJ4 A;  2RSM A;  4MLQ A;  2EOQ A;  1IMU A;  4LFC E;  5KL6 A;  2CSH A;  1IQS A;  1X6F A;  4J8Z A;  2EM7 A;  4LF5 E;  1MGT A;  1A1H A;  4X8W A;  4BHB A;  2EMC A;  3P1X A;  2N8X A;  1HR0 E;  1JK1 A;  2YWQ A;  4R2C A;  4NHR A;  1X5W A;  1DQ3 A;  5T6J A;  4LFB E;  5CFF E;  1BB8 A;  2EM0 A;  2DIX A;  3HXL A;  4F9A B;  2EOO A;  1XMO E;  4DV2 E;  4BHC A;  1A1K A;  2EP3 A;  4NXN E;  2RS6 A;  3VK6 A;  2D9H A;  1GZ6 A;  2DB2 A;  2KON A;  3OML A;  2JPA A;  5KL7 A;  2UXD E;  2EMA A;  2L2K B;  3HTX A;  2YTQ A;  4R8O A;  1SFE A;  2RSI A;  4LF4 E;  3L00 A;  2RTX A;  3T1Y E;  1NEI A;  4YHH E;  3IWD A;  2EWL A;  4O24 A;  2H36 X;  5A6B D;  4DUZ E;  5AE3 A;  1NCS A;  4OOG C;  2L92 A;  1TN9 A;  2JR1 A;  5F3W A;  4JI4 E;  2YTE A;  1N32 E;  4KZS A;  2DLK A;  5KL3 A;  2EQ1 A;  2LUP B;  1RQ0 A;  1EH6 A;  4X66 E;  4JI6 E;  2EZ6 A;  5IV8 B;  2YRH A;  3C4B A;  4JI7 E;  2CPN A;  2EOF A;  4HEI A;  2EN3 A;  2LTS A;  1HNW E;  1N36 E;  2L8T A;  2EPR A;  4DR2 E;  2EPZ A;  4F9B B;  2ADR A;  4LFA E;  3LML A;  1LLM C;  2M9A A;  4DR4 E;  1F2I G;  2ENC A;  4F6M A;  3KZY A;  1UHZ A;  1IBM E;  4M2Z A;  4DV6 E;  2GPI A;  3EQ1 A;  5LMU E;  1ZBQ A;  2YT4 A;  4R2R A;  5A6J A;  1YSA C;  3VYY A;  1YFH A;  2EMX A;  2YTP A;  2EQ3 A;  1X6H A;  2F8B A;  2F4V E;  1PJQ A;  5BR8 E;  2GLI A;  2UXC E;  3BGH A;  2YTD A;  1PDA A;  2NUE A;  2DSY A;  2JXP A;  4L8N A;  1IBL E;  1A1F A;  2YU8 A;  2YTI A;  3AUZ A;  3H09 A;  2JOX A;  4I8O A;  4R2S A;  2DLQ A;  4F2J C;  4O5G A;  3C4T A;  1A1J A;  3MHH C;  5A69 A;  2J7J A;  4R2E A; 
#chains in the Genus database with same CATH homology
 2RQL A;  1L4S A;  3TQM A;  2YWQ A;  1IMU A;  1N3G A;  4HEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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