2K7IA

Solution nmr structure of protein atu0232 from agrobacterium tumefaciens. northeast structural genomics consortium (nesg) target att3. ontario center for structural proteomics target atc0223.
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
62
structure length
62
Chain Sequence
MYKFEIYQDKAGEYRFRFKASNGETMFSSEGYKAKASAIHAIESIKRNSAGADTVDLTTMTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0339 protein Atu0232
publication title Solution structure of protein ATU0232 from Agrobacterium Tumefaciens.
rcsb
source organism Agrobacterium tumefaciens str.
total genus 10
structure length 62
sequence length 62
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.160 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain YegP-like 2k7iA01
3BIDA 2K7IA
chains in the Genus database with same CATH superfamily
2HC5A 4M30A 1T38A 4BBYA 4TUGA 2ELYA 5KL7A 2EOMA 3ADGA 5AE3A 4O4KA 3ADIA 4WXCA 1T4NA 1J5EE 3IWDA 3C6KA 1XMOE 1MEYC 4RH8A 1WRJA 4L8NA 4TUIA 2GPIA 4F6NA 3MHSC 2DIXA 2EM7A 2B3TB 1A1KA 2EPCA 2EM2A 1KYQA 1YYKA 2YTFA 1JK2A 2FTXB 2EMYA 3QG5C 1A1JA 2YT4A 2EN2A 4R2EA 5IXMB 4WSPA 1YUJA 5T6JA 2DMYA 1J26A 4R03A 3BBGA 2YTQA 4F9CB 1EKZA 4B3SE 1A1LA 2K4VA 2JVAA 1UBDC 2CSHA 2RS6A 3HXLA 5CFFE 1YFHA 2JOXA 2YTPA 1T4OA 4LF9E 4X64E 2LV2A 2EM3A 3T1YE 1HR0E 4DMIA 5KL3A 1UN6B 2KOUA 2LJUA 1ZU1A 3T1HE 1WHNA 2VF1A 1ZBTA 4LF4E 4IS1C 1AAYA 3ZOQB 2EE8A 4DV4E 1GQEA 2EM8A 1IQSA 4DR1E 2M4IA 2EQ0A 4JI8E 2NUEA 5ADZA 4X9JA 3MSWA 1RMDA 4OX9E 4JV5E 2L2NA 4LF5E 2I13A 2RPCA 4LFBE 2EPOA 3C6MA 4HTGA 1DI2A 2EOSA 4JI5E 1KJKA 1LLMC 2EMIA 2EMWA 3KZZA 3BGHA 4NXNE 4M9VC 2EOXA 2EZ6A 3VYXA 2YTNA 1XNRE 2LVHA 2UXCE 1G2DC 3THNA 4F2JC 2V83A 2YTOA 3LLHA 4YHHE 4ZYGA 2M7QA 2M1SA 2LRSA 1YUIA 2Q8UA 2WBTA 1X6HA 4DV5E 4WX9A 1N36E 1IBKE 2EM6A 3LMLA 1RC7A 4X65E 2EJ4A 2EOQA 4DUYE 1PJTA 2MKDA 1WHQA 3F6HA 5AC4A 4BS9A 3DF6A 2YSPA 2L33A 4X62E 2NUGA 5AE1A 2V87A 2MDRA 2RSMA 5KL4A 1YSAC 4AQYE 3P1XA 4J8ZA 3ADJA 1IQOA 1L4SA 2EPMX 4N4RB 1SR9A 1IBLE 1A1FA 4F9AB 2J7JA 1XNQE 4R2CA 2JR1A 4NXME 4BMJA 2V8QB 4X66E 2VQEE 4ZYDA 2JWOA 5KL6A 2H36X 2HGHA 5AE2A 2YTEA 3J7Yp 2EN1A 4JYAE 2YSOA 3HPSA 1FJGE 1X6FA 2ENCA 4JI7E 1T39A 2EN3A 3RMPA 1N3GA 2NABA 4Q35B 4LFCE 2EPAA 2YTIA 2EMBA 4X8WA 2EPXA 2EPKX 3KZYA 4I8OA 1DGCA 2RQLA 4DR4E 1QU6A 4WSGA 4GZNC 1PDAA 4JI6E 4DV0E 1BBGA 4FK5C 2YRHA 2FV4B 2F8BA 4F9BB 1JK1A 3HPZA 2WZOA 1X6EA 4B3RE 5IT9C 4R2QA 2EMFA 4R2DA 2RS7A 4LF8E 4KWYA 2EL5A 1IMUA 4KZSA 4F54A 2LUPB 2YTDA 2MDGA 4MLVA 2EWLA 4O5GA 4RHBB 2LTSA 2EPUA 5A6JA 5A6BA 4LFAE 5F3WA 2LTRA 2EQ3A 5AC5A 2LJHA 3ECRA 1AH5A 5LL6R 1EH6A 2EN8A 2YPNA 1ZAAC 1N34E 2JY9A 2LCEA 2L2KB 4LTYA 4B3TE 5FLXC 1YPNA 2EMHA 2EM4A 2L3JA 1G2FC 2CT1A 2JP9A 4KHPE 2LBSB 2I9IA 2NUFA 4JI1E 4DR3E 1X49A 1EH7A 3VHTB 4DV2E 2ZM6E 4M2ZA 4BC7A 4Q28A 2RSIA 1EH8A 1IBME 3C4TA 1TF3A 2ODRC 5A6AA 4BCAA 2PRTA 1QNTA 2HJJA 1PKPA 4O43A 2EPLX 5KL2A 1STUA 5A69A 3JTZA 3THOB 4LF6E 2EMLA 2MC6A 2YRMA 5A2QC 5IV8B 3VYYA 3VK6A 2EL6A 2DRPA 2WCC3 2ELZA 2EPNA 3MHHC 2ENAA 3JU0A 2EOJA 2G7HA 1B69A 1RQ0A 2E5LE 4JI2E 3EPJA 2R76A 3JAMC 1PJSA 5TSEA 2UUAE 1YYWA 1FKAE 4WFTA 5DNYA 1UHZA 2IHR1 2VE7C 3AV0A 1YYOA 2JOBA 4DV3E 5LMNE 1X47A 4WXDA 4OOGC 1HNZE 4R2SA 2YTJA 3H09A 2GLIA 4GKKE 1X48A 2EOFA 2M9AA 3IWCA 2EPRA 3BIDA 2EOZA 3OMLA 2EL4A 2ODRD 2EMXA 2B7TA 2DMIA 3DJWA 1YZ9A 2LO3A 2EM5A 2DLQA 1F2IG 4R2RA 2B9DA 1SFEA 3ADLA 2KHXA 1BBOA 2BB8A 2V88A 4O24A 1PJQA 1WXRA 4DV7E 2NA2A 4B3ME 1UILA 3K6QA 5KL5A 2EMGA 1I94E 2EN4A 4ZYEA 3EPHA 2EM9A 4K0KE 4JI0E 2V85A 5LLQA 3EPLA 4JI3E 4WYQB 5BR8E 2L6MA 4R8OA 2UUCE 2LMZA 2L92A 4LF7E 2ENHA 2YZTA 2E1MA 1DQ3A 3L00A 2WBSA 2L8TA 2EMCA 4DR5E 2CPNA 2BBGA 4DKKA 1GZ6A 1X3CA 2N8XA 4BC9A 4F6MA 2MKNA 3HTXA 2F4VE 3UK3C 1A1HA 4WPYA 2KONA 2JYAA 3EQ1A 4R2AA 3TQMA 1HNXE 4HEIA 2JPAA 2EN6A 4P78A 3KWRA 2LE2A 2N3GA 4R2PA 4DUZE 1TN9A 2MC5A 1BB8A 2CTDA 2GHFA 2L2MA 4L5NC 2FGGA 2VRDA 2HHHE 1NCSA 3OTOE 1X5WA 2YTGA 4GEQB 3AUZA 3EPKA 1A1IA 2L3CA 2UU9E 3HQ1A 2K7IA 1XMQE 4ZYHA 1MGTA 2V86A 4GKJE 5A6BD 2EORA 2UXDE 2B7VA 4BHBA 4NHRA 3M99B 4DR6E 4IJDA 5IWAE 5A6KA 2EOYA 2VQFE 1O0WA 4DV1E 2YWQA 2EOIA 4MLQA 2YU5A 2RTXA 2ADRA 2EOEA 2EN7A 2D9HA 2YU8A 4NZVA 2EPZA 1T4LB 4P7DA 3J81C 5LMUE 2DLKA 3F6GA 2N3HA 4M0VA 1GTKA 4BHCA 2DSYA 1Z1BA 2EMAA 1N33E 4YY3E 1NEIA 1ZBQA 4JI4E 4DR7E 2EOHA 3IWBA 2EQ1A 2WBUA 2UUBE 1A1GA 2EM0A 2R1FA 2JXPA 4LU9A 4DR2E 2EMZA 2E72A 2DB2A 2EMKA 1ZR9A 3C4BA 1N32E 3BF2A 2YRKA 1P47A 2LT7A 3FIGA 2A25A 2UXBE 4DV6E 1HNWE 1WJPA 3J7AG 2V89A 2EP3A 2EPPA 2EOOA 5AASA 3J80C 2LUQA 2DGCA 1TF6A
chains in the Genus database with same CATH topology
3BIDA 2K7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BID A;  2K7I A; 
#chains in the Genus database with same CATH topology
 2HC5 A;  4M30 A;  1T38 A;  4BBY A;  4TUG A;  2ELY A;  5KL7 A;  2EOM A;  3ADG A;  5AE3 A;  4O4K A;  3ADI A;  4WXC A;  1T4N A;  1J5E E;  3IWD A;  3C6K A;  1XMO E;  1MEY C;  4RH8 A;  1WRJ A;  4L8N A;  4TUI A;  2GPI A;  4F6N A;  3MHS C;  2DIX A;  2EM7 A;  2B3T B;  1A1K A;  2EPC A;  2EM2 A;  1KYQ A;  1YYK A;  2YTF A;  1JK2 A;  2FTX B;  2EMY A;  3QG5 C;  1A1J A;  2YT4 A;  2EN2 A;  4R2E A;  5IXM B;  4WSP A;  1YUJ A;  5T6J A;  2DMY A;  1J26 A;  4R03 A;  3BBG A;  2YTQ A;  4F9C B;  1EKZ A;  4B3S E;  1A1L A;  2K4V A;  2JVA A;  1UBD C;  2CSH A;  2RS6 A;  3HXL A;  5CFF E;  1YFH A;  2JOX A;  2YTP A;  1T4O A;  4LF9 E;  4X64 E;  2LV2 A;  2EM3 A;  3T1Y E;  1HR0 E;  4DMI A;  5KL3 A;  1UN6 B;  2KOU A;  2LJU A;  1ZU1 A;  3T1H E;  1WHN A;  2VF1 A;  1ZBT A;  4LF4 E;  4IS1 C;  1AAY A;  3ZOQ B;  2EE8 A;  4DV4 E;  1GQE A;  2EM8 A;  1IQS A;  4DR1 E;  2M4I A;  2EQ0 A;  4JI8 E;  2NUE A;  5ADZ A;  4X9J A;  3MSW A;  1RMD A;  4OX9 E;  4JV5 E;  2L2N A;  4LF5 E;  2I13 A;  2RPC A;  4LFB E;  2EPO A;  3C6M A;  4HTG A;  1DI2 A;  2EOS A;  4JI5 E;  1KJK A;  1LLM C;  2EMI A;  2EMW A;  3KZZ A;  3BGH A;  4NXN E;  4M9V C;  2EOX A;  2EZ6 A;  3VYX A;  2YTN A;  1XNR E;  2LVH A;  2UXC E;  1G2D C;  3THN A;  4F2J C;  2V83 A;  2YTO A;  3LLH A;  4YHH E;  4ZYG A;  2M7Q A;  2M1S A;  2LRS A;  1YUI A;  2Q8U A;  2WBT A;  1X6H A;  4DV5 E;  4WX9 A;  1N36 E;  1IBK E;  2EM6 A;  3LML A;  1RC7 A;  4X65 E;  2EJ4 A;  2EOQ A;  4DUY E;  1PJT A;  2MKD A;  1WHQ A;  3F6H A;  5AC4 A;  4BS9 A;  3DF6 A;  2YSP A;  2L33 A;  4X62 E;  2NUG A;  5AE1 A;  2V87 A;  2MDR A;  2RSM A;  5KL4 A;  1YSA C;  4AQY E;  3P1X A;  4J8Z A;  3ADJ A;  1IQO A;  1L4S A;  2EPM X;  4N4R B;  1SR9 A;  1IBL E;  1A1F A;  4F9A B;  2J7J A;  1XNQ E;  4R2C A;  2JR1 A;  4NXM E;  4BMJ A;  2V8Q B;  4X66 E;  2VQE E;  4ZYD A;  2JWO A;  5KL6 A;  2H36 X;  2HGH A;  5AE2 A;  2YTE A;  3J7Y p;  2EN1 A;  4JYA E;  2YSO A;  3HPS A;  1FJG E;  1X6F A;  2ENC A;  4JI7 E;  1T39 A;  2EN3 A;  3RMP A;  1N3G A;  2NAB A;  4Q35 B;  4LFC E;  2EPA A;  2YTI A;  2EMB A;  4X8W A;  2EPX A;  2EPK X;  3KZY A;  4I8O A;  1DGC A;  2RQL A;  4DR4 E;  1QU6 A;  4WSG A;  4GZN C;  1PDA A;  4JI6 E;  4DV0 E;  1BBG A;  4FK5 C;  2YRH A;  2FV4 B;  2F8B A;  4F9B B;  1JK1 A;  3HPZ A;  2WZO A;  1X6E A;  4B3R E;  5IT9 C;  4R2Q A;  2EMF A;  4R2D A;  2RS7 A;  4LF8 E;  4KWY A;  2EL5 A;  1IMU A;  4KZS A;  4F54 A;  2LUP B;  2YTD A;  2MDG A;  4MLV A;  2EWL A;  4O5G A;  4RHB B;  2LTS A;  2EPU A;  5A6J A;  5A6B A;  4LFA E;  5F3W A;  2LTR A;  2EQ3 A;  5AC5 A;  2LJH A;  3ECR A;  1AH5 A;  5LL6 R;  1EH6 A;  2EN8 A;  2YPN A;  1ZAA C;  1N34 E;  2JY9 A;  2LCE A;  2L2K B;  4LTY A;  4B3T E;  5FLX C;  1YPN A;  2EMH A;  2EM4 A;  2L3J A;  1G2F C;  2CT1 A;  2JP9 A;  4KHP E;  2LBS B;  2I9I A;  2NUF A;  4JI1 E;  4DR3 E;  1X49 A;  1EH7 A;  3VHT B;  4DV2 E;  2ZM6 E;  4M2Z A;  4BC7 A;  4Q28 A;  2RSI A;  1EH8 A;  1IBM E;  3C4T A;  1TF3 A;  2ODR C;  5A6A A;  4BCA A;  2PRT A;  1QNT A;  2HJJ A;  1PKP A;  4O43 A;  2EPL X;  5KL2 A;  1STU A;  5A69 A;  3JTZ A;  3THO B;  4LF6 E;  2EML A;  2MC6 A;  2YRM A;  5A2Q C;  5IV8 B;  3VYY A;  3VK6 A;  2EL6 A;  2DRP A;  2WCC 3;  2ELZ A;  2EPN A;  3MHH C;  2ENA A;  3JU0 A;  2EOJ A;  2G7H A;  1B69 A;  1RQ0 A;  2E5L E;  4JI2 E;  3EPJ A;  2R76 A;  3JAM C;  1PJS A;  5TSE A;  2UUA E;  1YYW A;  1FKA E;  4WFT A;  5DNY A;  1UHZ A;  2IHR 1;  2VE7 C;  3AV0 A;  1YYO A;  2JOB A;  4DV3 E;  5LMN E;  1X47 A;  4WXD A;  4OOG C;  1HNZ E;  4R2S A;  2YTJ A;  3H09 A;  2GLI A;  4GKK E;  1X48 A;  2EOF A;  2M9A A;  3IWC A;  2EPR A;  3BID A;  2EOZ A;  3OML A;  2EL4 A;  2ODR D;  2EMX A;  2B7T A;  2DMI A;  3DJW A;  1YZ9 A;  2LO3 A;  2EM5 A;  2DLQ A;  1F2I G;  4R2R A;  2B9D A;  1SFE A;  3ADL A;  2KHX A;  1BBO A;  2BB8 A;  2V88 A;  4O24 A;  1PJQ A;  1WXR A;  4DV7 E;  2NA2 A;  4B3M E;  1UIL A;  3K6Q A;  5KL5 A;  2EMG A;  1I94 E;  2EN4 A;  4ZYE A;  3EPH A;  2EM9 A;  4K0K E;  4JI0 E;  2V85 A;  5LLQ A;  3EPL A;  4JI3 E;  4WYQ B;  5BR8 E;  2L6M A;  4R8O A;  2UUC E;  2LMZ A;  2L92 A;  4LF7 E;  2ENH A;  2YZT A;  2E1M A;  1DQ3 A;  3L00 A;  2WBS A;  2L8T A;  2EMC A;  4DR5 E;  2CPN A;  2BBG A;  4DKK A;  1GZ6 A;  1X3C A;  2N8X A;  4BC9 A;  4F6M A;  2MKN A;  3HTX A;  2F4V E;  3UK3 C;  1A1H A;  4WPY A;  2KON A;  2JYA A;  3EQ1 A;  4R2A A;  3TQM A;  1HNX E;  4HEI A;  2JPA A;  2EN6 A;  4P78 A;  3KWR A;  2LE2 A;  2N3G A;  4R2P A;  4DUZ E;  1TN9 A;  2MC5 A;  1BB8 A;  2CTD A;  2GHF A;  2L2M A;  4L5N C;  2FGG A;  2VRD A;  2HHH E;  1NCS A;  3OTO E;  1X5W A;  2YTG A;  4GEQ B;  3AUZ A;  3EPK A;  1A1I A;  2L3C A;  2UU9 E;  3HQ1 A;  2K7I A;  1XMQ E;  4ZYH A;  1MGT A;  2V86 A;  4GKJ E;  5A6B D;  2EOR A;  2UXD E;  2B7V A;  4BHB A;  4NHR A;  3M99 B;  4DR6 E;  4IJD A;  5IWA E;  5A6K A;  2EOY A;  2VQF E;  1O0W A;  4DV1 E;  2YWQ A;  2EOI A;  4MLQ A;  2YU5 A;  2RTX A;  2ADR A;  2EOE A;  2EN7 A;  2D9H A;  2YU8 A;  4NZV A;  2EPZ A;  1T4L B;  4P7D A;  3J81 C;  5LMU E;  2DLK A;  3F6G A;  2N3H A;  4M0V A;  1GTK A;  4BHC A;  2DSY A;  1Z1B A;  2EMA A;  1N33 E;  4YY3 E;  1NEI A;  1ZBQ A;  4JI4 E;  4DR7 E;  2EOH A;  3IWB A;  2EQ1 A;  2WBU A;  2UUB E;  1A1G A;  2EM0 A;  2R1F A;  2JXP A;  4LU9 A;  4DR2 E;  2EMZ A;  2E72 A;  2DB2 A;  2EMK A;  1ZR9 A;  3C4B A;  1N32 E;  3BF2 A;  2YRK A;  1P47 A;  2LT7 A;  3FIG A;  2A25 A;  2UXB E;  4DV6 E;  1HNW E;  1WJP A;  3J7A G;  2V89 A;  2EP3 A;  2EPP A;  2EOO A;  5AAS A;  3J80 C;  2LUQ A;  2DGC A;  1TF6 A; 
#chains in the Genus database with same CATH homology
 3BID A;  2K7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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