The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
77
|
sequence length |
273
|
structure length |
262
|
Chain Sequence |
MVKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQKRFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILISTNGLSPRFGALVRDEIRNLFTQMGDLALEDAVVKLGELRRGIRLLAPDDKDVKYRMDWARRCTDLFGIQHCHNIDVKRLLDLFKVMFQEQNCSLQFPPRERLLSEYCS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule keywords |
Siroheme biosynthesis protein MET8
|
publication title |
The structure of Saccharomyces cerevisiae Met8p, a bifunctional dehydrogenase and ferrochelatase.
pubmed doi rcsb |
source organism |
Saccharomyces cerevisiae
|
molecule tags |
Oxidoreductase, lyase
|
total genus |
77
|
structure length |
262
|
sequence length |
273
|
chains with identical sequence |
B, C
|
ec nomenclature |
ec
1.3.1.76: Precorrin-2 dehydrogenase. |
pdb deposition date | 2002-02-05 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF13241 | NAD_binding_7 | Putative NAD(P)-binding |
A | PF14823 | Sirohm_synth_C | Sirohaem biosynthesis protein C-terminal |
A | PF14824 | Sirohm_synth_M | Sirohaem biosynthesis protein central |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Siro heme synthase C-terminal domain-like | Siroheme synthase; domain 3 | ||
Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Siroheme synthase; domain 2 | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain |