3BGHA

Crystal structure of putative neuraminyllactose-binding hemagglutinin homolog from helicobacter pylori
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
206
structure length
187
Chain Sequence
VELHFHYPIKGKQEPKNSHLVVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQFKDASEIPQDIKEKALLVLRMDGNVAILEDIVEESDALSEEKVIDMSSGYLNLNFVEPKSEDIIHSFGIDVSKIKAVIERVKETDHDQAIRKIMNQAYHKVMVHITKELSKKHMEHYEKVSSEM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative neuraminyllactose-binding hemagglutinin homolog
publication title Crystal structure of putative neuraminyllactose-binding hemagglutinin homolog from Helicobacter pylori.
rcsb
source organism Helicobacter pylori
total genus 57
structure length 187
sequence length 206
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-11-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.180 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Putative neuraminyllactose-binding hemagglutinin homolog like domain 3bghA01
3BGHA 2I9IA
chains in the Genus database with same CATH superfamily
2YTEA 1UBDC 2EOOA 4DR1E 4NXME 1QNTA 2EPOA 1DI2A 2V89A 2V85A 1XMOE 2L6MA 2YSPA 1A1LA 2R1FA 3M99B 1A1GA 2RS6A 3ADLA 2DSYA 2LV2A 4GZNC 2DLKA 2EMHA 5AC5A 2EMWA 2L3CA 2EN4A 4RHBB 1N34E 1YYWA 2EMKA 4DV6E 3KWRA 5BR8E 2HC5A 2EPKX 1JK2A 3JTZA 2E1MA 1X48A 4BC9A 2EORA 4BC7A 3ECRA 1ZBQA 5KL6A 4X66E 4X9JA 2EMBA 2EN6A 4Q28A 2YTNA 4DMIA 1IBKE 4I8OA 4JV5E 1FJGE 3IWBA 4WFTA 2I13A 4R2SA 3JAMC 4DR2E 1YFHA 1IBME 4R2DA 3KZZA 5KL7A 2YWQA 4LF8E 5A6BD 2DLQA 2DMIA 4L8NA 3FIGA 5IT9C 3MHHC 1A1KA 1HNXE 3VK6A 4WSPA 2EOQA 1ZR9A 2YU5A 5LLQA 4OX9E 1X47A 3AUZA 4LTYA 4JI3E 1AH5A 1IQSA 2EM5A 1KJKA 2EMCA 5IXMB 2LE2A 5A6BA 2YTOA 3LLHA 1X6FA 4NHRA 1KYQA 2YU8A 3TQMA 4BMJA 4GKJE 5IV8B 4Q35B 1XMQE 1EH6A 5LL6R 2EMXA 1ZU1A 2B7VA 2GHFA 4F2JC 3F6HA 1I94E 4WX9A 2MKDA 3KZYA 1RMDA 3F6GA 3OTOE 3C6KA 2EMLA 2EN2A 4X62E 2E72A 1T38A 5AE2A 1PJTA 4O24A 4BBYA 4DV1E 1STUA 3ADGA 2VQFE 4DR3E 5AASA 2EOEA 4RH8A 5ADZA 2V88A 4X64E 2EQ0A 5KL3A 2ENAA 5KL5A 4BCAA 2EPAA 1YZ9A 2PRTA 4DV4E 3VHTB 4DV0E 4BHCA 3C6MA 1GQEA 2YZTA 3L00A 3THNA 1HNZE 3OMLA 2EOHA 3LMLA 2EL4A 5CFFE 5DNYA 1UHZA 2DRPA 4KHPE 3ZOQB 4DV3E 2EM2A 2EMZA 2F4VE 2EOJA 4AQYE 4J8ZA 3MHSC 4NXNE 2LVHA 3C4TA 2HGHA 1HNWE 1PDAA 4M9VC 2JVAA 4ZYHA 2L8TA 2WBSA 2JPAA 2EM3A 3T1YE 3HXLA 1WHQA 2RQLA 3J81C 2LBSB 5IWAE 1GTKA 4WXDA 1QU6A 1WJPA 3MSWA 3BBGA 2JXPA 3J80C 1YUJA 4B3TE 2UUCE 5A69A 2B3TB 5A6KA 1A1FA 4R2RA 2EPNA 4F9AB 1JK1A 4JI0E 5AC4A 5F3WA 1RQ0A 2JWOA 2G7HA 2FV4B 4DV7E 1RC7A 1BBGA 2EM0A 4JI1E 2EE8A 5A6AA 5AE3A 2EMYA 4R03A 2GPIA 2JOBA 2EPMX 2YTDA 1WRJA 2NUFA 4FK5C 2JOXA 1XNQE 2UXBE 4YY3E 2JR1A 2J7JA 2I9IA 5A6JA 2NUGA 2RSMA 4DUZE 4L5NC 2B9DA 2WBUA 4JI2E 2UU9E 4M0VA 2MKNA 4F54A 2KOUA 1N32E 5LMUE 2ENCA 2EOZA 4JI7E 2RS7A 3H09A 1A1JA 1B69A 2YSOA 2EL6A 2MDGA 4DKKA 2EOSA 1YPNA 1TF6A 2CPNA 1YUIA 2ENHA 4IJDA 2LMZA 2UUAE 4KWYA 3HPZA 3IWCA 2LTRA 2KHXA 4LF9E 2CSHA 4JI6E 3EQ1A 2EN3A 2NA2A 2E5LE 1X5WA 2EJ4A 2NABA 1X6EA 2YRMA 4MLQA 1SR9A 1LLMC 4LFBE 2JP9A 1NEIA 1EKZA 2EWLA 4JYAE 1P47A 2K7IA 2WZOA 1WXRA 4O4KA 4LF6E 4HEIA 4X8WA 1NCSA 2VQEE 2L33A 2EL5A 4K0KE 2DB2A 1F2IG 2CT1A 1YSAC 1N3GA 2EMAA 1BBOA 3AV0A 2EN1A 4R2QA 2EZ6A 2ELZA 1Z1BA 4X65E 4R8OA 1T4LB 2ADRA 2V8QB 2YTFA 2ZM6E 1O0WA 2ELYA 1A1IA 5AE1A 1G2DC 4DR6E 4B3ME 2Q8UA 1PKPA 2EPUA 2VE7C 1EH8A 2L2NA 2M7QA 1N33E 4JI8E 2EMFA 3J7AG 4N4RB 2LUPB 2HJJA 4LF7E 4LF5E 2MDRA 4GKKE 1TF3A 2EPCA 1MGTA 5T6JA 3QG5C 3ADIA 2M1SA 3THOB 5A2QC 4R2CA 1L4SA 2KONA 1AAYA 2YRKA 2YTIA 3BIDA 2WBTA 4DR7E 3UK3C 2EM6A 1A1HA 3IWDA 4R2EA 1DQ3A 3C4BA 2L2MA 4KZSA 2B7TA 2D9HA 2LJUA 4BS9A 4WPYA 2EPPA 1HR0E 4P7DA 4LFCE 2EN8A 2HHHE 4TUIA 2UXDE 2N8XA 4O43A 4IS1C 2BB8A 2EMIA 4OOGC 1N36E 5FLXC 4R2AA 3J7Yp 3VYYA 1XNRE 1IBLE 4DR4E 2EOIA 1X3CA 2EN7A 4F9BB 4R2PA 2RSIA 1J26A 2YPNA 4WYQB 2EM7A 1FKAE 4ZYDA 2EPXA 4WSGA 2MC6A 1PJSA 2DMYA 4F9CB 1J5EE 2EPRA 2EM9A 2JYAA 3EPKA 4P78A 1T39A 1IMUA 2ODRD 1X6HA 2LRSA 2YTQA 3DF6A 1ZAAC 2DGCA 2N3HA 2EOXA 3BF2A 4O5GA 3HPSA 2V86A 2M4IA 2WCC3 2R76A 5TSEA 2V83A 4LU9A 2YTGA 3K6QA 3P1XA 4ZYEA 2L92A 2M9AA 2LT7A 2UXCE 2EQ1A 2VRDA 2YTPA 2EP3A 2N3GA 2EMGA 4HTGA 2YRHA 2YT4A 4DV5E 1SFEA 2DIXA 4MLVA 1PJQA 1GZ6A 3RMPA 2EOYA 3BGHA 2LTSA 3JU0A 2H36X 4BHBA 5LMNE 3HTXA 2A25A 2CTDA 1WHNA 1IQOA 4YHHE 4B3RE 2ODRC 2FTXB 4TUGA 2L3JA 4GEQB 3DJWA 2UUBE 2FGGA 2JY9A 3EPHA 4M2ZA 2RPCA 2LJHA 2GLIA 2EOMA 4NZVA 4ZYGA 5KL2A 4DR5E 3T1HE 2LCEA 1X49A 3EPJA 4DUYE 1BB8A 2V87A 2L2KB 3ADJA 1MEYC 1G2FC 4DV2E 1T4OA 4F6NA 2EM8A 2NUEA 1T4NA 2IHR1 2EPLX 4LF4E 2MC5A 2EQ3A 4F6MA 2EM4A 1YYOA 4LFAE 2LUQA 1UILA 4M30A 2F8BA 2BBGA 3HQ1A 1DGCA 4JI5E 2YTJA 5KL4A 2LO3A 2EOFA 2EPZA 1YYKA 4B3SE 2VF1A 1TN9A 1EH7A 2K4VA 3VYXA 1UN6B 4WXCA 1ZBTA 3EPLA 4JI4E 2RTXA
chains in the Genus database with same CATH topology
3BGHA 2I9IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BGH A;  2I9I A; 
#chains in the Genus database with same CATH topology
 2YTE A;  1UBD C;  2EOO A;  4DR1 E;  4NXM E;  1QNT A;  2EPO A;  1DI2 A;  2V89 A;  2V85 A;  1XMO E;  2L6M A;  2YSP A;  1A1L A;  2R1F A;  3M99 B;  1A1G A;  2RS6 A;  3ADL A;  2DSY A;  2LV2 A;  4GZN C;  2DLK A;  2EMH A;  5AC5 A;  2EMW A;  2L3C A;  2EN4 A;  4RHB B;  1N34 E;  1YYW A;  2EMK A;  4DV6 E;  3KWR A;  5BR8 E;  2HC5 A;  2EPK X;  1JK2 A;  3JTZ A;  2E1M A;  1X48 A;  4BC9 A;  2EOR A;  4BC7 A;  3ECR A;  1ZBQ A;  5KL6 A;  4X66 E;  4X9J A;  2EMB A;  2EN6 A;  4Q28 A;  2YTN A;  4DMI A;  1IBK E;  4I8O A;  4JV5 E;  1FJG E;  3IWB A;  4WFT A;  2I13 A;  4R2S A;  3JAM C;  4DR2 E;  1YFH A;  1IBM E;  4R2D A;  3KZZ A;  5KL7 A;  2YWQ A;  4LF8 E;  5A6B D;  2DLQ A;  2DMI A;  4L8N A;  3FIG A;  5IT9 C;  3MHH C;  1A1K A;  1HNX E;  3VK6 A;  4WSP A;  2EOQ A;  1ZR9 A;  2YU5 A;  5LLQ A;  4OX9 E;  1X47 A;  3AUZ A;  4LTY A;  4JI3 E;  1AH5 A;  1IQS A;  2EM5 A;  1KJK A;  2EMC A;  5IXM B;  2LE2 A;  5A6B A;  2YTO A;  3LLH A;  1X6F A;  4NHR A;  1KYQ A;  2YU8 A;  3TQM A;  4BMJ A;  4GKJ E;  5IV8 B;  4Q35 B;  1XMQ E;  1EH6 A;  5LL6 R;  2EMX A;  1ZU1 A;  2B7V A;  2GHF A;  4F2J C;  3F6H A;  1I94 E;  4WX9 A;  2MKD A;  3KZY A;  1RMD A;  3F6G A;  3OTO E;  3C6K A;  2EML A;  2EN2 A;  4X62 E;  2E72 A;  1T38 A;  5AE2 A;  1PJT A;  4O24 A;  4BBY A;  4DV1 E;  1STU A;  3ADG A;  2VQF E;  4DR3 E;  5AAS A;  2EOE A;  4RH8 A;  5ADZ A;  2V88 A;  4X64 E;  2EQ0 A;  5KL3 A;  2ENA A;  5KL5 A;  4BCA A;  2EPA A;  1YZ9 A;  2PRT A;  4DV4 E;  3VHT B;  4DV0 E;  4BHC A;  3C6M A;  1GQE A;  2YZT A;  3L00 A;  3THN A;  1HNZ E;  3OML A;  2EOH A;  3LML A;  2EL4 A;  5CFF E;  5DNY A;  1UHZ A;  2DRP A;  4KHP E;  3ZOQ B;  4DV3 E;  2EM2 A;  2EMZ A;  2F4V E;  2EOJ A;  4AQY E;  4J8Z A;  3MHS C;  4NXN E;  2LVH A;  3C4T A;  2HGH A;  1HNW E;  1PDA A;  4M9V C;  2JVA A;  4ZYH A;  2L8T A;  2WBS A;  2JPA A;  2EM3 A;  3T1Y E;  3HXL A;  1WHQ A;  2RQL A;  3J81 C;  2LBS B;  5IWA E;  1GTK A;  4WXD A;  1QU6 A;  1WJP A;  3MSW A;  3BBG A;  2JXP A;  3J80 C;  1YUJ A;  4B3T E;  2UUC E;  5A69 A;  2B3T B;  5A6K A;  1A1F A;  4R2R A;  2EPN A;  4F9A B;  1JK1 A;  4JI0 E;  5AC4 A;  5F3W A;  1RQ0 A;  2JWO A;  2G7H A;  2FV4 B;  4DV7 E;  1RC7 A;  1BBG A;  2EM0 A;  4JI1 E;  2EE8 A;  5A6A A;  5AE3 A;  2EMY A;  4R03 A;  2GPI A;  2JOB A;  2EPM X;  2YTD A;  1WRJ A;  2NUF A;  4FK5 C;  2JOX A;  1XNQ E;  2UXB E;  4YY3 E;  2JR1 A;  2J7J A;  2I9I A;  5A6J A;  2NUG A;  2RSM A;  4DUZ E;  4L5N C;  2B9D A;  2WBU A;  4JI2 E;  2UU9 E;  4M0V A;  2MKN A;  4F54 A;  2KOU A;  1N32 E;  5LMU E;  2ENC A;  2EOZ A;  4JI7 E;  2RS7 A;  3H09 A;  1A1J A;  1B69 A;  2YSO A;  2EL6 A;  2MDG A;  4DKK A;  2EOS A;  1YPN A;  1TF6 A;  2CPN A;  1YUI A;  2ENH A;  4IJD A;  2LMZ A;  2UUA E;  4KWY A;  3HPZ A;  3IWC A;  2LTR A;  2KHX A;  4LF9 E;  2CSH A;  4JI6 E;  3EQ1 A;  2EN3 A;  2NA2 A;  2E5L E;  1X5W A;  2EJ4 A;  2NAB A;  1X6E A;  2YRM A;  4MLQ A;  1SR9 A;  1LLM C;  4LFB E;  2JP9 A;  1NEI A;  1EKZ A;  2EWL A;  4JYA E;  1P47 A;  2K7I A;  2WZO A;  1WXR A;  4O4K A;  4LF6 E;  4HEI A;  4X8W A;  1NCS A;  2VQE E;  2L33 A;  2EL5 A;  4K0K E;  2DB2 A;  1F2I G;  2CT1 A;  1YSA C;  1N3G A;  2EMA A;  1BBO A;  3AV0 A;  2EN1 A;  4R2Q A;  2EZ6 A;  2ELZ A;  1Z1B A;  4X65 E;  4R8O A;  1T4L B;  2ADR A;  2V8Q B;  2YTF A;  2ZM6 E;  1O0W A;  2ELY A;  1A1I A;  5AE1 A;  1G2D C;  4DR6 E;  4B3M E;  2Q8U A;  1PKP A;  2EPU A;  2VE7 C;  1EH8 A;  2L2N A;  2M7Q A;  1N33 E;  4JI8 E;  2EMF A;  3J7A G;  4N4R B;  2LUP B;  2HJJ A;  4LF7 E;  4LF5 E;  2MDR A;  4GKK E;  1TF3 A;  2EPC A;  1MGT A;  5T6J A;  3QG5 C;  3ADI A;  2M1S A;  3THO B;  5A2Q C;  4R2C A;  1L4S A;  2KON A;  1AAY A;  2YRK A;  2YTI A;  3BID A;  2WBT A;  4DR7 E;  3UK3 C;  2EM6 A;  1A1H A;  3IWD A;  4R2E A;  1DQ3 A;  3C4B A;  2L2M A;  4KZS A;  2B7T A;  2D9H A;  2LJU A;  4BS9 A;  4WPY A;  2EPP A;  1HR0 E;  4P7D A;  4LFC E;  2EN8 A;  2HHH E;  4TUI A;  2UXD E;  2N8X A;  4O43 A;  4IS1 C;  2BB8 A;  2EMI A;  4OOG C;  1N36 E;  5FLX C;  4R2A A;  3J7Y p;  3VYY A;  1XNR E;  1IBL E;  4DR4 E;  2EOI A;  1X3C A;  2EN7 A;  4F9B B;  4R2P A;  2RSI A;  1J26 A;  2YPN A;  4WYQ B;  2EM7 A;  1FKA E;  4ZYD A;  2EPX A;  4WSG A;  2MC6 A;  1PJS A;  2DMY A;  4F9C B;  1J5E E;  2EPR A;  2EM9 A;  2JYA A;  3EPK A;  4P78 A;  1T39 A;  1IMU A;  2ODR D;  1X6H A;  2LRS A;  2YTQ A;  3DF6 A;  1ZAA C;  2DGC A;  2N3H A;  2EOX A;  3BF2 A;  4O5G A;  3HPS A;  2V86 A;  2M4I A;  2WCC 3;  2R76 A;  5TSE A;  2V83 A;  4LU9 A;  2YTG A;  3K6Q A;  3P1X A;  4ZYE A;  2L92 A;  2M9A A;  2LT7 A;  2UXC E;  2EQ1 A;  2VRD A;  2YTP A;  2EP3 A;  2N3G A;  2EMG A;  4HTG A;  2YRH A;  2YT4 A;  4DV5 E;  1SFE A;  2DIX A;  4MLV A;  1PJQ A;  1GZ6 A;  3RMP A;  2EOY A;  3BGH A;  2LTS A;  3JU0 A;  2H36 X;  4BHB A;  5LMN E;  3HTX A;  2A25 A;  2CTD A;  1WHN A;  1IQO A;  4YHH E;  4B3R E;  2ODR C;  2FTX B;  4TUG A;  2L3J A;  4GEQ B;  3DJW A;  2UUB E;  2FGG A;  2JY9 A;  3EPH A;  4M2Z A;  2RPC A;  2LJH A;  2GLI A;  2EOM A;  4NZV A;  4ZYG A;  5KL2 A;  4DR5 E;  3T1H E;  2LCE A;  1X49 A;  3EPJ A;  4DUY E;  1BB8 A;  2V87 A;  2L2K B;  3ADJ A;  1MEY C;  1G2F C;  4DV2 E;  1T4O A;  4F6N A;  2EM8 A;  2NUE A;  1T4N A;  2IHR 1;  2EPL X;  4LF4 E;  2MC5 A;  2EQ3 A;  4F6M A;  2EM4 A;  1YYO A;  4LFA E;  2LUQ A;  1UIL A;  4M30 A;  2F8B A;  2BBG A;  3HQ1 A;  1DGC A;  4JI5 E;  2YTJ A;  5KL4 A;  2LO3 A;  2EOF A;  2EPZ A;  1YYK A;  4B3S E;  2VF1 A;  1TN9 A;  1EH7 A;  2K4V A;  3VYX A;  1UN6 B;  4WXC A;  1ZBT A;  3EPL A;  4JI4 E;  2RTX A; 
#chains in the Genus database with same CATH homology
 3BGH A;  2I9I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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