3BBGA

Multi-conformer structure of ragweed pollen allergen from ambrosia trifida v, nmr, 2 structures
Total Genus 5
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 3bbgA00
2BBGA 3BBGA 1BBGA
chains in the Genus database with same CATH superfamily
2EOJA 2L3CA 5A6KA 4WX9A 4X9JA 4ZYDA 1ZR9A 2L2MA 1X47A 2B9DA 1WJPA 2EPPA 3HPSA 2KHXA 4OX9E 3LMLA 1IQSA 2G7HA 1BBOA 2ENCA 3LLHA 2EOEA 2FTXB 3FIGA 1N33E 2I9IA 2LO3A 5AASA 4NXME 2CT1A 3TQMA 3BGHA 1STUA 5KL4A 5BR8E 2R1FA 2K7IA 4I8OA 2HJJA 5IWAE 3K6QA 3C6MA 2RPCA 4BBYA 1EH6A 1RQ0A 4RH8A 1LLMC 4JI1E 2MC5A 3J7Yp 2HC5A 5KL3A 4K0KE 2YTFA 4DV6E 2DSYA 2L2NA 4LTYA 2EPLX 1DQ3A 1A1KA 2YU8A 1YUIA 2LCEA 2LT7A 4JI3E 4RHBB 4DV3E 2RS6A 2EWLA 2DGCA 1FKAE 3J7AG 2LTRA 4DR4E 4Q28A 1X6EA 2ZM6E 3MHHC 1MGTA 3AV0A 4DR6E 1X49A 1G2DC 3IWBA 4JI8E 1DI2A 4DR1E 4GKKE 2EQ1A 1ZAAC 2V86A 5KL5A 3P1XA 4NZVA 2UXDE 2MC6A 1X6FA 5T6JA 4X66E 5LMNE 2JOBA 2YRMA 3JAMC 4R2AA 4JI7E 2EOQA 4N4RB 2L3JA 2WBUA 2J7JA 5IXMB 1EH8A 4Q35B 1ZBQA 1A1FA 2HHHE 1HNXE 2EM3A 5A6BA 2WBTA 2EE8A 2M9AA 5TSEA 2EORA 4R2DA 2EMHA 1SR9A 2ELYA 2EOYA 3KZZA 2DIXA 4DR2E 4OOGC 4M9VC 2UUAE 4MLQA 3HPZA 5DNYA 2EMAA 1SFEA 4DR5E 1NEIA 3JU0A 4GKJE 2EMYA 2LBSB 1N36E 3DF6A 2EOHA 1YZ9A 2L6MA 4FK5C 3T1YE 2JYAA 4BMJA 2EN7A 2NUEA 2EL4A 2JPAA 4JI4E 2RSMA 3EPKA 1BB8A 1YPNA 2EMWA 2NUFA 3UK3C 4JV5E 2LV2A 4J8ZA 4BC9A 4M0VA 2LTSA 2PRTA 1JK1A 2UU9E 1IBLE 2NA2A 2V87A 4DV2E 3EPJA 2YU5A 2ODRD 1A1JA 2EOSA 5F3WA 1YYOA 1BBGA 4DV0E 4R03A 5KL6A 2UXCE 4F9BB 2KONA 4DV4E 1O0WA 2NUGA 1GQEA 2EPNA 1A1HA 1XNQE 1YYWA 2HGHA 4R2EA 4O43A 1ZU1A 2EPRA 2EM6A 3HXLA 1N32E 5AC4A 3KZYA 1EKZA 2RS7A 1HNZE 5A6JA 2YRKA 1B69A 5LMUE 4TUIA 2YRHA 1G2FC 2L2KB 4L5NC 4KZSA 3ZOQB 2EN6A 2GHFA 5KL7A 4ZYEA 5A2QC 2EPXA 4DMIA 1UN6B 2YTJA 4AQYE 1I94E 3H09A 2EN4A 2BB8A 2E72A 4HTGA 1N3GA 3EPLA 4DKKA 3J81C 3BIDA 2DLKA 2EQ3A 1NCSA 3ADJA 1WXRA 2EPCA 2YT4A 1XMOE 1PKPA 3ADGA 2YTEA 5AE1A 4JYAE 2EM7A 2EZ6A 4M30A 4B3SE 2EOIA 2V8QB 1T4OA 4R8OA 1MEYC 2JY9A 1IMUA 1DGCA 3F6HA 2I13A 3VYXA 2EPZA 2FGGA 2D9HA 1YFHA 2WCC3 3C4TA 2CTDA 2EPUA 1P47A 4LF6E 4LF8E 3HTXA 4LFAE 2EM0A 2UUCE 5A6BD 1UBDC 2EMFA 3F6GA 5ADZA 1J26A 4R2SA 4O24A 4F9AB 2JVAA 3C6KA 2MKDA 2EOXA 2ELZA 3EQ1A 3EPHA 4LU9A 4ZYGA 2LRSA 1GTKA 2YZTA 2CPNA 2GLIA 1FJGE 2B3TB 3THOB 1T39A 4IS1C 3MHSC 1Z1BA 2FV4B 4JI2E 1WHNA 5LL6R 1YSAC 2M7QA 4NHRA 3BF2A 2LE2A 4WYQB 1YYKA 1TF3A 2L33A 2K4VA 4O4KA 4R2RA 3HQ1A 2EL6A 1TN9A 3VYYA 4F9CB 2EMZA 2YTNA 4M2ZA 3MSWA 1PJTA 3ADIA 1GZ6A 2N8XA 1UILA 1RMDA 2YPNA 2VQEE 4X62E 2UUBE 4R2QA 4LF5E 4LF9E 2ODRC 5KL2A 2CSHA 1IBKE 2KOUA 2V88A 4BC7A 4GZNC 2N3GA 2YTIA 2EN2A 2JP9A 2N3HA 2E1MA 2JWOA 2LMZA 2R76A 4DR7E 2YTOA 4LF7E 4X8WA 5A69A 2DB2A 1WHQA 2EPKX 4WSPA 5AC5A 4NXNE 5LLQA 2MDGA 3ADLA 4LF4E 3L00A 2IHR1 4L8NA 1PJSA 3IWCA 3M99B 1IBME 3C4BA 1EH7A 2YSPA 2EM8A 4F54A 2WBSA 4F6NA 1XNRE 2JR1A 3VK6A 2V85A 4R2CA 1KJKA 1JK2A 3OTOE 2UXBE 2EOFA 4IJDA 2L8TA 4P7DA 2YTGA 2JXPA 2YTPA 4R2PA 5AE3A 2EN8A 3IWDA 4WXCA 4KHPE 1X6HA 3OMLA 1A1IA 1N34E 4P78A 4YY3E 2LJHA 3VHTB 2EMGA 4MLVA 1J5EE 4JI0E 5FLXC 2DMYA 1T38A 5IT9C 2LJUA 4GEQB 4BCAA 1T4LB 4WSGA 2EOZA 3THNA 4X64E 2M4IA 2E5LE 2LUQA 5CFFE 2M1SA 1YUJA 4LFBE 2F8BA 2YSOA 1T4NA 2DMIA 1PDAA 1X5WA 4LFCE 3AUZA 2EOMA 2VF1A 4JI5E 2LVHA 2EMKA 2YTQA 2B7TA 4DUYE 2EM2A 4B3RE 2EQ0A 2VRDA 2EMBA 2YTDA 2V83A 2EN1A 2MDRA 4F2JC 1QNTA 3QG5C 4X65E 3JTZA 2EPMX 2MKNA 2EMXA 4ZYHA 2RTXA 4WXDA 4BS9A 1ZBTA 3KWRA 1KYQA 2EMLA 2VE7C 1RC7A 2A25A 5IV8B 3T1HE 2V89A 4WPYA 1XMQE 2NABA 1AAYA 2YWQA 2B7VA 2EL5A 4JI6E 1IQOA 5AE2A 2Q8UA 2H36X 1UHZA 4DV7E 2EMCA 3RMPA 2F4VE 2EM4A 2JOXA 4DR3E 2EOOA 4F6MA 2EMIA 2LUPB 2ENHA 4B3ME 3BBGA 2VQFE 4KWYA 2RSIA 4DV5E 1L4SA 4WFTA 3DJWA 2EPOA 1WRJA 4BHBA 3ECRA 2EM5A 4TUGA 4HEIA 1HNWE 4DV1E 2ENAA 4BHCA 2BBGA 2EPAA 2L92A 4B3TE 5A6AA 1QU6A 4O5GA 4YHHE 2DRPA 2WZOA 2DLQA 1F2IG 1TF6A 2RQLA 4DUZE 2GPIA 2ADRA 2EP3A 1X48A 2EN3A 1HR0E 3J80C 1AH5A 1A1LA 1X3CA 1A1GA 2EJ4A 1PJQA 2EM9A
chains in the Genus database with same CATH topology
2BBGA 3BBGA 1BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BBG A;  3BBG A;  1BBG A; 
#chains in the Genus database with same CATH topology
 2EOJ A;  2L3C A;  5A6K A;  4WX9 A;  4X9J A;  4ZYD A;  1ZR9 A;  2L2M A;  1X47 A;  2B9D A;  1WJP A;  2EPP A;  3HPS A;  2KHX A;  4OX9 E;  3LML A;  1IQS A;  2G7H A;  1BBO A;  2ENC A;  3LLH A;  2EOE A;  2FTX B;  3FIG A;  1N33 E;  2I9I A;  2LO3 A;  5AAS A;  4NXM E;  2CT1 A;  3TQM A;  3BGH A;  1STU A;  5KL4 A;  5BR8 E;  2R1F A;  2K7I A;  4I8O A;  2HJJ A;  5IWA E;  3K6Q A;  3C6M A;  2RPC A;  4BBY A;  1EH6 A;  1RQ0 A;  4RH8 A;  1LLM C;  4JI1 E;  2MC5 A;  3J7Y p;  2HC5 A;  5KL3 A;  4K0K E;  2YTF A;  4DV6 E;  2DSY A;  2L2N A;  4LTY A;  2EPL X;  1DQ3 A;  1A1K A;  2YU8 A;  1YUI A;  2LCE A;  2LT7 A;  4JI3 E;  4RHB B;  4DV3 E;  2RS6 A;  2EWL A;  2DGC A;  1FKA E;  3J7A G;  2LTR A;  4DR4 E;  4Q28 A;  1X6E A;  2ZM6 E;  3MHH C;  1MGT A;  3AV0 A;  4DR6 E;  1X49 A;  1G2D C;  3IWB A;  4JI8 E;  1DI2 A;  4DR1 E;  4GKK E;  2EQ1 A;  1ZAA C;  2V86 A;  5KL5 A;  3P1X A;  4NZV A;  2UXD E;  2MC6 A;  1X6F A;  5T6J A;  4X66 E;  5LMN E;  2JOB A;  2YRM A;  3JAM C;  4R2A A;  4JI7 E;  2EOQ A;  4N4R B;  2L3J A;  2WBU A;  2J7J A;  5IXM B;  1EH8 A;  4Q35 B;  1ZBQ A;  1A1F A;  2HHH E;  1HNX E;  2EM3 A;  5A6B A;  2WBT A;  2EE8 A;  2M9A A;  5TSE A;  2EOR A;  4R2D A;  2EMH A;  1SR9 A;  2ELY A;  2EOY A;  3KZZ A;  2DIX A;  4DR2 E;  4OOG C;  4M9V C;  2UUA E;  4MLQ A;  3HPZ A;  5DNY A;  2EMA A;  1SFE A;  4DR5 E;  1NEI A;  3JU0 A;  4GKJ E;  2EMY A;  2LBS B;  1N36 E;  3DF6 A;  2EOH A;  1YZ9 A;  2L6M A;  4FK5 C;  3T1Y E;  2JYA A;  4BMJ A;  2EN7 A;  2NUE A;  2EL4 A;  2JPA A;  4JI4 E;  2RSM A;  3EPK A;  1BB8 A;  1YPN A;  2EMW A;  2NUF A;  3UK3 C;  4JV5 E;  2LV2 A;  4J8Z A;  4BC9 A;  4M0V A;  2LTS A;  2PRT A;  1JK1 A;  2UU9 E;  1IBL E;  2NA2 A;  2V87 A;  4DV2 E;  3EPJ A;  2YU5 A;  2ODR D;  1A1J A;  2EOS A;  5F3W A;  1YYO A;  1BBG A;  4DV0 E;  4R03 A;  5KL6 A;  2UXC E;  4F9B B;  2KON A;  4DV4 E;  1O0W A;  2NUG A;  1GQE A;  2EPN A;  1A1H A;  1XNQ E;  1YYW A;  2HGH A;  4R2E A;  4O43 A;  1ZU1 A;  2EPR A;  2EM6 A;  3HXL A;  1N32 E;  5AC4 A;  3KZY A;  1EKZ A;  2RS7 A;  1HNZ E;  5A6J A;  2YRK A;  1B69 A;  5LMU E;  4TUI A;  2YRH A;  1G2F C;  2L2K B;  4L5N C;  4KZS A;  3ZOQ B;  2EN6 A;  2GHF A;  5KL7 A;  4ZYE A;  5A2Q C;  2EPX A;  4DMI A;  1UN6 B;  2YTJ A;  4AQY E;  1I94 E;  3H09 A;  2EN4 A;  2BB8 A;  2E72 A;  4HTG A;  1N3G A;  3EPL A;  4DKK A;  3J81 C;  3BID A;  2DLK A;  2EQ3 A;  1NCS A;  3ADJ A;  1WXR A;  2EPC A;  2YT4 A;  1XMO E;  1PKP A;  3ADG A;  2YTE A;  5AE1 A;  4JYA E;  2EM7 A;  2EZ6 A;  4M30 A;  4B3S E;  2EOI A;  2V8Q B;  1T4O A;  4R8O A;  1MEY C;  2JY9 A;  1IMU A;  1DGC A;  3F6H A;  2I13 A;  3VYX A;  2EPZ A;  2FGG A;  2D9H A;  1YFH A;  2WCC 3;  3C4T A;  2CTD A;  2EPU A;  1P47 A;  4LF6 E;  4LF8 E;  3HTX A;  4LFA E;  2EM0 A;  2UUC E;  5A6B D;  1UBD C;  2EMF A;  3F6G A;  5ADZ A;  1J26 A;  4R2S A;  4O24 A;  4F9A B;  2JVA A;  3C6K A;  2MKD A;  2EOX A;  2ELZ A;  3EQ1 A;  3EPH A;  4LU9 A;  4ZYG A;  2LRS A;  1GTK A;  2YZT A;  2CPN A;  2GLI A;  1FJG E;  2B3T B;  3THO B;  1T39 A;  4IS1 C;  3MHS C;  1Z1B A;  2FV4 B;  4JI2 E;  1WHN A;  5LL6 R;  1YSA C;  2M7Q A;  4NHR A;  3BF2 A;  2LE2 A;  4WYQ B;  1YYK A;  1TF3 A;  2L33 A;  2K4V A;  4O4K A;  4R2R A;  3HQ1 A;  2EL6 A;  1TN9 A;  3VYY A;  4F9C B;  2EMZ A;  2YTN A;  4M2Z A;  3MSW A;  1PJT A;  3ADI A;  1GZ6 A;  2N8X A;  1UIL A;  1RMD A;  2YPN A;  2VQE E;  4X62 E;  2UUB E;  4R2Q A;  4LF5 E;  4LF9 E;  2ODR C;  5KL2 A;  2CSH A;  1IBK E;  2KOU A;  2V88 A;  4BC7 A;  4GZN C;  2N3G A;  2YTI A;  2EN2 A;  2JP9 A;  2N3H A;  2E1M A;  2JWO A;  2LMZ A;  2R76 A;  4DR7 E;  2YTO A;  4LF7 E;  4X8W A;  5A69 A;  2DB2 A;  1WHQ A;  2EPK X;  4WSP A;  5AC5 A;  4NXN E;  5LLQ A;  2MDG A;  3ADL A;  4LF4 E;  3L00 A;  2IHR 1;  4L8N A;  1PJS A;  3IWC A;  3M99 B;  1IBM E;  3C4B A;  1EH7 A;  2YSP A;  2EM8 A;  4F54 A;  2WBS A;  4F6N A;  1XNR E;  2JR1 A;  3VK6 A;  2V85 A;  4R2C A;  1KJK A;  1JK2 A;  3OTO E;  2UXB E;  2EOF A;  4IJD A;  2L8T A;  4P7D A;  2YTG A;  2JXP A;  2YTP A;  4R2P A;  5AE3 A;  2EN8 A;  3IWD A;  4WXC A;  4KHP E;  1X6H A;  3OML A;  1A1I A;  1N34 E;  4P78 A;  4YY3 E;  2LJH A;  3VHT B;  2EMG A;  4MLV A;  1J5E E;  4JI0 E;  5FLX C;  2DMY A;  1T38 A;  5IT9 C;  2LJU A;  4GEQ B;  4BCA A;  1T4L B;  4WSG A;  2EOZ A;  3THN A;  4X64 E;  2M4I A;  2E5L E;  2LUQ A;  5CFF E;  2M1S A;  1YUJ A;  4LFB E;  2F8B A;  2YSO A;  1T4N A;  2DMI A;  1PDA A;  1X5W A;  4LFC E;  3AUZ A;  2EOM A;  2VF1 A;  4JI5 E;  2LVH A;  2EMK A;  2YTQ A;  2B7T A;  4DUY E;  2EM2 A;  4B3R E;  2EQ0 A;  2VRD A;  2EMB A;  2YTD A;  2V83 A;  2EN1 A;  2MDR A;  4F2J C;  1QNT A;  3QG5 C;  4X65 E;  3JTZ A;  2EPM X;  2MKN A;  2EMX A;  4ZYH A;  2RTX A;  4WXD A;  4BS9 A;  1ZBT A;  3KWR A;  1KYQ A;  2EML A;  2VE7 C;  1RC7 A;  2A25 A;  5IV8 B;  3T1H E;  2V89 A;  4WPY A;  1XMQ E;  2NAB A;  1AAY A;  2YWQ A;  2B7V A;  2EL5 A;  4JI6 E;  1IQO A;  5AE2 A;  2Q8U A;  2H36 X;  1UHZ A;  4DV7 E;  2EMC A;  3RMP A;  2F4V E;  2EM4 A;  2JOX A;  4DR3 E;  2EOO A;  4F6M A;  2EMI A;  2LUP B;  2ENH A;  4B3M E;  3BBG A;  2VQF E;  4KWY A;  2RSI A;  4DV5 E;  1L4S A;  4WFT A;  3DJW A;  2EPO A;  1WRJ A;  4BHB A;  3ECR A;  2EM5 A;  4TUG A;  4HEI A;  1HNW E;  4DV1 E;  2ENA A;  4BHC A;  2BBG A;  2EPA A;  2L92 A;  4B3T E;  5A6A A;  1QU6 A;  4O5G A;  4YHH E;  2DRP A;  2WZO A;  2DLQ A;  1F2I G;  1TF6 A;  2RQL A;  4DUZ E;  2GPI A;  2ADR A;  2EP3 A;  1X48 A;  2EN3 A;  1HR0 E;  3J80 C;  1AH5 A;  1A1L A;  1X3C A;  1A1G A;  2EJ4 A;  1PJQ A;  2EM9 A; 
#chains in the Genus database with same CATH homology
 2BBG A;  3BBG A;  1BBG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...