3BBGA

Multi-conformer structure of ragweed pollen allergen from ambrosia trifida v, nmr, 2 structures
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
molecule keywords POLLEN ALLERGEN 5
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 3bbgA00
3BBGA 2BBGA 1BBGA
chains in the Genus database with same CATH superfamily
1N33E 5IV8B 3J7AG 1EH8A 1IBME 1N36E 2V8QB 4BBYA 5BR8E 3QG5C 4DUYE 1G2DC 1AAYA 2EMKA 3BBGA 2NABA 2LO3A 2YTJA 2ADRA 3HXLA 2M4IA 2ODRD 1X3CA 2EOHA 1RMDA 5AE1A 4B3RE 3M99B 4MLVA 3J81C 5A6BA 3KZYA 1PJQA 3LMLA 2LMZA 2YWQA 2EPOA 3IWDA 4KHPE 4JI4E 3BIDA 1HNWE 2I13A 1T4OA 5KL2A 3THOB 4R2DA 1ZBTA 2EN7A 1L4SA 1X6HA 4F2JC 1KYQA 1YUJA 4JI8E 4DR4E 2EOFA 2YTNA 2MC6A 4JV5E 2L2NA 4BC7A 2EM2A 2EPLX 1XNQE 2EM0A 2B7TA 2UUBE 2MKDA 3BGHA 3F6GA 4ZYHA 4DR3E 4M2ZA 1HR0E 2VQFE 4JI7E 2CT1A 1T39A 2EM8A 4K0KE 3KWRA 2ZM6E 1UHZA 4TUGA 2B9DA 4O5GA 1YSAC 2LUQA 5KL5A 5AC5A 2L33A 2L3JA 1N32E 3VHTB 3MHSC 4R03A 5AE2A 4LF9E 4NZVA 2V86A 2L6MA 2DB2A 3HTXA 1GQEA 1QU6A 4O43A 4R2QA 2EMIA 5IT9C 1FJGE 5DNYA 2RPCA 3K6QA 2EMGA 1XMOE 2LE2A 4BCAA 2B7VA 3VYXA 4DV2E 4FK5C 4DR6E 5AE3A 2YSPA 1HNXE 2N8XA 2R1FA 5AASA 2EOQA 5LL6R 2LT7A 4LFAE 4LU9A 1T4NA 1ZBQA 2YRHA 2JPAA 4B3ME 2GPIA 2HGHA 2ENHA 3IWBA 4DMIA 3ADIA 2EM5A 1A1GA 2UXDE 2LJHA 2EM7A 2WBSA 2EPCA 4B3TE 1EH7A 2EM3A 5A6JA 2YSOA 4WFTA 2DRPA 2EN4A 2EOXA 4BC9A 2LJUA 2HJJA 2EN8A 4DV5E 1WJPA 4L5NC 3MHHC 1X6FA 1A1LA 2RS6A 1WXRA 4YHHE 1RC7A 2EOEA 2VE7C 2EPRA 2DIXA 1J26A 4DKKA 2A25A 4DV6E 4KWYA 1WRJA 3AUZA 1X5WA 1AH5A 2EPNA 5TSEA 2EJ4A 2EORA 2M7QA 2EMWA 2VRDA 1DQ3A 2L8TA 4DV3E 2EPXA 2EL6A 2HC5A 1T4LB 2JP9A 4B3SE 4LTYA 3VYYA 1BBGA 4DV7E 2V88A 3DJWA 4Q28A 2BBGA 1I94E 2FTXB 3F6HA 3OTOE 4BHBA 1XNRE 2J7JA 2YRKA 2KHXA 2EM9A 1TF6A 2CSHA 1FKAE 2GHFA 1MEYC 2EQ1A 3JAMC 1IBLE 4JI5E 2YTQA 2B3TB 2NUEA 5A69A 3T1HE 4F9CB 2DMYA 1N3GA 5KL7A 3C4BA 1A1HA 3TQMA 1JK2A 1J5EE 2KOUA 2WBTA 3EPLA 2FV4B 2EN3A 1KJKA 2JR1A 4BMJA 2EP3A 2LV2A 4JI3E 4M9VC 2DGCA 2EQ3A 2K7IA 5F3WA 4JI0E 1JK1A 4LFCE 2DLKA 2WCC3 2N3GA 1HNZE 4TUIA 1EH6A 2LBSB 1SR9A 5AC4A 2YU5A 1P47A 2RSIA 1IBKE 2MKNA 4JI2E 3LLHA 2JY9A 3C4TA 2EMAA 1PJSA 1YUIA 3ECRA 1ZR9A 4YY3E 4DV4E 2PRTA 3ADGA 2ELYA 3H09A 2RS7A 1X47A 2NUGA 4R2EA 1A1IA 4GKKE 5CFFE 3J80C 3EPJA 2I9IA 4HEIA 2V89A 1YPNA 2ODRC 3THNA 2M9AA 4BS9A 5A6BD 4WSGA 1UN6B 2UUAE 4RH8A 2JVAA 1IQSA 1QNTA 4WPYA 2V87A 4ZYGA 3DF6A 1RQ0A 3FIGA 2YZTA 1PJTA 2EMHA 4Q35B 2EOMA 2HHHE 4IS1C 4L8NA 3ZOQB 5IWAE 4WXCA 1UILA 5KL3A 3C6MA 4P78A 1G2FC 2ENAA 4I8OA 2EMLA 5LMNE 4P7DA 2JOBA 1YFHA 2YTEA 4BHCA 3IWCA 2EN2A 2IHR1 4ZYDA 2H36X 5A6AA 1ZAAC 2EN1A 2FGGA 2EE8A 5A2QC 1T38A 2EM4A 2RQLA 3HQ1A 4M0VA 2YPNA 2M1SA 2LTRA 2RTXA 1ZU1A 2NA2A 1XMQE 2EMYA 2GLIA 4NXME 2EPMX 4X64E 4DV0E 4LFBE 2EL4A 3JU0A 3C6KA 4N4RB 1BB8A 2JOXA 1STUA 1WHNA 4OX9E 2EMXA 3UK3C 4WXDA 2YTPA 4R2SA 1YZ9A 2DLQA 3ADLA 4DV1E 1X6EA 2L2MA 4X62E 5A6KA 2EOSA 2EN6A 4F9BB 2VQEE 1IQOA 2L3CA 1Z1BA 4X66E 1NEIA 4F6MA 5T6JA 1GTKA 2L2KB 2DMIA 5KL6A 2JWOA 3OMLA 2WZOA 2YU8A 4LF6E 4LF7E 4X8WA 1SFEA 5IXMB 4WSPA 2EOIA 2EPZA 4MLQA 1PDAA 3L00A 2EOOA 1A1KA 4HTGA 2K4VA 2EL5A 1A1FA 2LRSA 4O24A 1TN9A 1DGCA 3MSWA 2CTDA 4R2CA 1GZ6A 1UBDC 2RSMA 3EPKA 2EZ6A 3HPZA 3J7Yp 1PKPA 4AQYE 4WX9A 2V83A 2YRMA 1DI2A 2EQ0A 2F4VE 2BB8A 2YTFA 4R8OA 4J8ZA 2EPPA 4DUZE 4GEQB 2MDRA 3P1XA 2YTOA 4NXNE 2EPUA 2YT4A 2G7HA 3EQ1A 4R2AA 2F8BA 2YTIA 4JYAE 4LF8E 1X48A 2MDGA 2YTGA 3HPSA 2V85A 4DR5E 2EOYA 2DSYA 2VF1A 2EPAA 4F6NA 4LF5E 2WBUA 3JTZA 4JI1E 2KONA 2YTDA 2CPNA 4LF4E 3KZZA 4DR2E 2JXPA 1B69A 2UXBE 3T1YE 1EKZA 1X49A 1YYKA 2LUPB 2E1MA 4IJDA 1WHQA 4DR7E 4X9JA 2R76A 1N34E 2NUFA 1O0WA 1MGTA 1LLMC 2LTSA 2E5LE 4F54A 3AV0A 4GZNC 2MC5A 3RMPA 2L92A 1NCSA 2Q8UA 5KL4A 5ADZA 2ELZA 2EM6A 2EMZA 4GKJE 4F9AB 2EMCA 2LCEA 4JI6E 5LLQA 2N3HA 2E72A 2EOZA 4X65E 4RHBB 4R2PA 4OOGC 2EMBA 2EMFA 2UUCE 4WYQB 5FLXC 1IMUA 5LMUE 2D9HA 3EPHA 2UXCE 4NHRA 1TF3A 4DR1E 1YYOA 4R2RA 3BF2A 2EWLA 1F2IG 2EOJA 3VK6A 2JYAA 1BBOA 2EPKX 2LVHA 4KZSA 2ENCA 4O4KA 1YYWA 2UU9E 4ZYEA 1A1JA 4M30A 3ADJA
chains in the Genus database with same CATH topology
3BBGA 2BBGA 1BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBG A;  2BBG A;  1BBG A; 
#chains in the Genus database with same CATH topology
 1N33 E;  5IV8 B;  3J7A G;  1EH8 A;  1IBM E;  1N36 E;  2V8Q B;  4BBY A;  5BR8 E;  3QG5 C;  4DUY E;  1G2D C;  1AAY A;  2EMK A;  3BBG A;  2NAB A;  2LO3 A;  2YTJ A;  2ADR A;  3HXL A;  2M4I A;  2ODR D;  1X3C A;  2EOH A;  1RMD A;  5AE1 A;  4B3R E;  3M99 B;  4MLV A;  3J81 C;  5A6B A;  3KZY A;  1PJQ A;  3LML A;  2LMZ A;  2YWQ A;  2EPO A;  3IWD A;  4KHP E;  4JI4 E;  3BID A;  1HNW E;  2I13 A;  1T4O A;  5KL2 A;  3THO B;  4R2D A;  1ZBT A;  2EN7 A;  1L4S A;  1X6H A;  4F2J C;  1KYQ A;  1YUJ A;  4JI8 E;  4DR4 E;  2EOF A;  2YTN A;  2MC6 A;  4JV5 E;  2L2N A;  4BC7 A;  2EM2 A;  2EPL X;  1XNQ E;  2EM0 A;  2B7T A;  2UUB E;  2MKD A;  3BGH A;  3F6G A;  4ZYH A;  4DR3 E;  4M2Z A;  1HR0 E;  2VQF E;  4JI7 E;  2CT1 A;  1T39 A;  2EM8 A;  4K0K E;  3KWR A;  2ZM6 E;  1UHZ A;  4TUG A;  2B9D A;  4O5G A;  1YSA C;  2LUQ A;  5KL5 A;  5AC5 A;  2L33 A;  2L3J A;  1N32 E;  3VHT B;  3MHS C;  4R03 A;  5AE2 A;  4LF9 E;  4NZV A;  2V86 A;  2L6M A;  2DB2 A;  3HTX A;  1GQE A;  1QU6 A;  4O43 A;  4R2Q A;  2EMI A;  5IT9 C;  1FJG E;  5DNY A;  2RPC A;  3K6Q A;  2EMG A;  1XMO E;  2LE2 A;  4BCA A;  2B7V A;  3VYX A;  4DV2 E;  4FK5 C;  4DR6 E;  5AE3 A;  2YSP A;  1HNX E;  2N8X A;  2R1F A;  5AAS A;  2EOQ A;  5LL6 R;  2LT7 A;  4LFA E;  4LU9 A;  1T4N A;  1ZBQ A;  2YRH A;  2JPA A;  4B3M E;  2GPI A;  2HGH A;  2ENH A;  3IWB A;  4DMI A;  3ADI A;  2EM5 A;  1A1G A;  2UXD E;  2LJH A;  2EM7 A;  2WBS A;  2EPC A;  4B3T E;  1EH7 A;  2EM3 A;  5A6J A;  2YSO A;  4WFT A;  2DRP A;  2EN4 A;  2EOX A;  4BC9 A;  2LJU A;  2HJJ A;  2EN8 A;  4DV5 E;  1WJP A;  4L5N C;  3MHH C;  1X6F A;  1A1L A;  2RS6 A;  1WXR A;  4YHH E;  1RC7 A;  2EOE A;  2VE7 C;  2EPR A;  2DIX A;  1J26 A;  4DKK A;  2A25 A;  4DV6 E;  4KWY A;  1WRJ A;  3AUZ A;  1X5W A;  1AH5 A;  2EPN A;  5TSE A;  2EJ4 A;  2EOR A;  2M7Q A;  2EMW A;  2VRD A;  1DQ3 A;  2L8T A;  4DV3 E;  2EPX A;  2EL6 A;  2HC5 A;  1T4L B;  2JP9 A;  4B3S E;  4LTY A;  3VYY A;  1BBG A;  4DV7 E;  2V88 A;  3DJW A;  4Q28 A;  2BBG A;  1I94 E;  2FTX B;  3F6H A;  3OTO E;  4BHB A;  1XNR E;  2J7J A;  2YRK A;  2KHX A;  2EM9 A;  1TF6 A;  2CSH A;  1FKA E;  2GHF A;  1MEY C;  2EQ1 A;  3JAM C;  1IBL E;  4JI5 E;  2YTQ A;  2B3T B;  2NUE A;  5A69 A;  3T1H E;  4F9C B;  2DMY A;  1N3G A;  5KL7 A;  3C4B A;  1A1H A;  3TQM A;  1JK2 A;  1J5E E;  2KOU A;  2WBT A;  3EPL A;  2FV4 B;  2EN3 A;  1KJK A;  2JR1 A;  4BMJ A;  2EP3 A;  2LV2 A;  4JI3 E;  4M9V C;  2DGC A;  2EQ3 A;  2K7I A;  5F3W A;  4JI0 E;  1JK1 A;  4LFC E;  2DLK A;  2WCC 3;  2N3G A;  1HNZ E;  4TUI A;  1EH6 A;  2LBS B;  1SR9 A;  5AC4 A;  2YU5 A;  1P47 A;  2RSI A;  1IBK E;  2MKN A;  4JI2 E;  3LLH A;  2JY9 A;  3C4T A;  2EMA A;  1PJS A;  1YUI A;  3ECR A;  1ZR9 A;  4YY3 E;  4DV4 E;  2PRT A;  3ADG A;  2ELY A;  3H09 A;  2RS7 A;  1X47 A;  2NUG A;  4R2E A;  1A1I A;  4GKK E;  5CFF E;  3J80 C;  3EPJ A;  2I9I A;  4HEI A;  2V89 A;  1YPN A;  2ODR C;  3THN A;  2M9A A;  4BS9 A;  5A6B D;  4WSG A;  1UN6 B;  2UUA E;  4RH8 A;  2JVA A;  1IQS A;  1QNT A;  4WPY A;  2V87 A;  4ZYG A;  3DF6 A;  1RQ0 A;  3FIG A;  2YZT A;  1PJT A;  2EMH A;  4Q35 B;  2EOM A;  2HHH E;  4IS1 C;  4L8N A;  3ZOQ B;  5IWA E;  4WXC A;  1UIL A;  5KL3 A;  3C6M A;  4P78 A;  1G2F C;  2ENA A;  4I8O A;  2EML A;  5LMN E;  4P7D A;  2JOB A;  1YFH A;  2YTE A;  4BHC A;  3IWC A;  2EN2 A;  2IHR 1;  4ZYD A;  2H36 X;  5A6A A;  1ZAA C;  2EN1 A;  2FGG A;  2EE8 A;  5A2Q C;  1T38 A;  2EM4 A;  2RQL A;  3HQ1 A;  4M0V A;  2YPN A;  2M1S A;  2LTR A;  2RTX A;  1ZU1 A;  2NA2 A;  1XMQ E;  2EMY A;  2GLI A;  4NXM E;  2EPM X;  4X64 E;  4DV0 E;  4LFB E;  2EL4 A;  3JU0 A;  3C6K A;  4N4R B;  1BB8 A;  2JOX A;  1STU A;  1WHN A;  4OX9 E;  2EMX A;  3UK3 C;  4WXD A;  2YTP A;  4R2S A;  1YZ9 A;  2DLQ A;  3ADL A;  4DV1 E;  1X6E A;  2L2M A;  4X62 E;  5A6K A;  2EOS A;  2EN6 A;  4F9B B;  2VQE E;  1IQO A;  2L3C A;  1Z1B A;  4X66 E;  1NEI A;  4F6M A;  5T6J A;  1GTK A;  2L2K B;  2DMI A;  5KL6 A;  2JWO A;  3OML A;  2WZO A;  2YU8 A;  4LF6 E;  4LF7 E;  4X8W A;  1SFE A;  5IXM B;  4WSP A;  2EOI A;  2EPZ A;  4MLQ A;  1PDA A;  3L00 A;  2EOO A;  1A1K A;  4HTG A;  2K4V A;  2EL5 A;  1A1F A;  2LRS A;  4O24 A;  1TN9 A;  1DGC A;  3MSW A;  2CTD A;  4R2C A;  1GZ6 A;  1UBD C;  2RSM A;  3EPK A;  2EZ6 A;  3HPZ A;  3J7Y p;  1PKP A;  4AQY E;  4WX9 A;  2V83 A;  2YRM A;  1DI2 A;  2EQ0 A;  2F4V E;  2BB8 A;  2YTF A;  4R8O A;  4J8Z A;  2EPP A;  4DUZ E;  4GEQ B;  2MDR A;  3P1X A;  2YTO A;  4NXN E;  2EPU A;  2YT4 A;  2G7H A;  3EQ1 A;  4R2A A;  2F8B A;  2YTI A;  4JYA E;  4LF8 E;  1X48 A;  2MDG A;  2YTG A;  3HPS A;  2V85 A;  4DR5 E;  2EOY A;  2DSY A;  2VF1 A;  2EPA A;  4F6N A;  4LF5 E;  2WBU A;  3JTZ A;  4JI1 E;  2KON A;  2YTD A;  2CPN A;  4LF4 E;  3KZZ A;  4DR2 E;  2JXP A;  1B69 A;  2UXB E;  3T1Y E;  1EKZ A;  1X49 A;  1YYK A;  2LUP B;  2E1M A;  4IJD A;  1WHQ A;  4DR7 E;  4X9J A;  2R76 A;  1N34 E;  2NUF A;  1O0W A;  1MGT A;  1LLM C;  2LTS A;  2E5L E;  4F54 A;  3AV0 A;  4GZN C;  2MC5 A;  3RMP A;  2L92 A;  1NCS A;  2Q8U A;  5KL4 A;  5ADZ A;  2ELZ A;  2EM6 A;  2EMZ A;  4GKJ E;  4F9A B;  2EMC A;  2LCE A;  4JI6 E;  5LLQ A;  2N3H A;  2E72 A;  2EOZ A;  4X65 E;  4RHB B;  4R2P A;  4OOG C;  2EMB A;  2EMF A;  2UUC E;  4WYQ B;  5FLX C;  1IMU A;  5LMU E;  2D9H A;  3EPH A;  2UXC E;  4NHR A;  1TF3 A;  4DR1 E;  1YYO A;  4R2R A;  3BF2 A;  2EWL A;  1F2I G;  2EOJ A;  3VK6 A;  2JYA A;  1BBO A;  2EPK X;  2LVH A;  4KZS A;  2ENC A;  4O4K A;  1YYW A;  2UU9 E;  4ZYE A;  1A1J A;  4M30 A;  3ADJ A; 
#chains in the Genus database with same CATH homology
 3BBG A;  2BBG A;  1BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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