3BBGA

Multi-conformer structure of ragweed pollen allergen from ambrosia trifida v, nmr, 2 structures
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
molecule keywords POLLEN ALLERGEN 5
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 3bbgA00
3BBGA 2BBGA 1BBGA
chains in the Genus database with same CATH superfamily
2KHXA 2EM6A 4DV2E 2LVHA 5KL4A 3UK3C 2EM2A 2UXCE 2L2MA 1X5WA 2EM8A 2H36X 3ADJA 3EPLA 2DRPA 1WHQA 1N34E 1WJPA 1A1JA 4F9AB 2EPPA 4F2JC 5AC4A 4WSGA 1N3GA 1KYQA 2EQ0A 2HHHE 1X48A 3P1XA 1JK2A 3AUZA 1YSAC 2LMZA 2EPUA 4RH8A 4JI7E 1NEIA 1ZR9A 2EOMA 2ADRA 4DKKA 1IBME 2LUQA 1GTKA 5LMUE 2M1SA 3HXLA 2EL4A 3THNA 1YYWA 3T1YE 4R2AA 5T6JA 2DIXA 1UBDC 2UUCE 4B3SE 4B3RE 2EMXA 3JU0A 1IQOA 2EM0A 2KOUA 5KL5A 1ZAAC 4LF8E 1EKZA 2YTIA 2V8QB 2VF1A 4DUYE 2ODRC 2EPXA 1MEYC 3VYYA 2WBSA 5CFFE 2ELYA 5A69A 1P47A 1EH7A 1XMQE 2YTPA 2UXBE 2YTQA 1X3CA 2ODRD 5F3WA 4NZVA 2EM7A 3F6HA 3AV0A 1A1KA 2EOSA 5AE2A 2EN8A 1RMDA 2VQEE 2EM9A 1B69A 2V89A 4DR7E 1SFEA 4WX9A 3DJWA 1JK1A 3ECRA 4AQYE 2EOIA 4LF6E 4F6MA 2MDGA 1A1HA 2YTNA 2RS7A 1YYKA 2WBUA 5AASA 2JR1A 4GKKE 4O24A 2YZTA 1J5EE 2RPCA 2ELZA 4HTGA 2D9HA 2EOXA 4R2PA 1UILA 2E72A 4DV5E 2ENCA 2L6MA 4NXNE 4DR6E 4JI8E 2GLIA 1DQ3A 2LJUA 2L2NA 4R2QA 2VQFE 1MGTA 2YPNA 5A2QC 3C6MA 2YTGA 4WSPA 4J8ZA 4WXDA 5KL3A 4F54A 2JOBA 4DV4E 2EJ4A 4X9JA 1PKPA 4X66E 4JI6E 4O5GA 2LRSA 4OOGC 2RS6A 4O43A 4JI3E 5KL2A 1FKAE 2EL5A 1ZU1A 3C6KA 1N32E 4DV6E 2CPNA 4LFCE 4Q28A 4P7DA 4M9VC 2EOQA 4R2EA 3BBGA 4P78A 1KJKA 5BR8E 1X49A 1XMOE 2V87A 4GKJE 2CSHA 2DGCA 1X6HA 5KL7A 4DV3E 4N4RB 2G7HA 1X6EA 4YY3E 3DF6A 1IBLE 3M99B 4JV5E 2A25A 2MC5A 2YU8A 4BS9A 4LF9E 3OMLA 2EN3A 4JI2E 2VE7C 2HJJA 1A1FA 5KL6A 2EN4A 3JTZA 2CTDA 2N3HA 2DLQA 1STUA 2EPNA 2EMYA 2L3CA 5DNYA 1YYOA 1DI2A 3KZYA 2ENAA 4JYAE 2YTEA 4WPYA 4BHBA 4DUZE 3QG5C 3EPHA 2BB8A 3HTXA 2JVAA 1O0WA 2EMZA 2V88A 3EPKA 1RC7A 3ADIA 4JI1E 4ZYGA 2EOFA 4M2ZA 4R03A 4L8NA 3VK6A 2BBGA 2EOYA 3VHTB 2FGGA 4LTYA 3J7AG 2J7JA 1UN6B 2DMYA 3ZOQB 5LMNE 4TUIA 4NXME 2WBTA 4BC9A 4DV1E 1T4LB 2EZ6A 2F8BA 1IQSA 3ADGA 4R2DA 1LLMC 3HPZA 2RTXA 4BBYA 4WXCA 2EN6A 4OX9E 2JOXA 1HNWE 2EPCA 2N3GA 4GEQB 4LF5E 2B7TA 2EPOA 2EPRA 4DV7E 4HEIA 3J80C 2GHFA 1HNXE 2EOZA 5AE1A 2NABA 4IJDA 1A1GA 5IV8B 1BBGA 1BBOA 1DGCA 4R2CA 4JI5E 1TN9A 4DR5E 2YT4A 2B7VA 2B3TB 2EMAA 2UUAE 5A6BA 1ZBTA 3L00A 4YHHE 2EMCA 4I8OA 3IWCA 1PDAA 2IHR1 2R76A 4L5NC 1WRJA 1I94E 3THOB 1XNRE 2EQ1A 2RSIA 2JXPA 2NUGA 2CT1A 2L92A 4ZYHA 5A6KA 4R8OA 4WYQB 2V86A 2I13A 2DMIA 2YSPA 1T4OA 3BIDA 2PRTA 4FK5C 1AH5A 1PJSA 2EMGA 2EQ3A 1A1IA 2NA2A 2DSYA 4F9CB 2EMKA 2EMHA 2M7QA 4BCAA 1T39A 1N33E 1YFHA 3EQ1A 1TF6A 1F2IG 4LF4E 2GPIA 2WCC3 1EH8A 3F6GA 1HR0E 2K7IA 3C4BA 2MKNA 4LU9A 2L2KB 2JY9A 2V85A 2EN7A 2YSOA 4O4KA 5IWAE 2EPKX 5FLXC 4RHBB 3VYXA 2EM3A 5IXMB 2M4IA 2EMWA 3MHHC 3C4TA 4M0VA 2JP9A 2LJHA 3KWRA 2EMLA 4F9BB 1QNTA 5AC5A 3LMLA 3OTOE 4BMJA 1IBKE 2YRKA 5IT9C 5TSEA 2JWOA 4MLQA 4LF7E 2R1FA 2LBSB 2LV2A 2EN2A 4BHCA 2K4VA 4GZNC 4ZYDA 3K6QA 2HGHA 2L3JA 1ZBQA 3IWBA 4BC7A 4IS1C 2Q8UA 3MSWA 1HNZE 2I9IA 3BF2A 1AAYA 1NCSA 2L33A 3T1HE 2LE2A 2EMFA 4JI4E 1G2DC 2EMIA 1QU6A 1WXRA 2LTSA 2YWQA 4DR1E 2EL6A 1X47A 1EH6A 2RQLA 1PJTA 3HQ1A 3MHSC 1UHZA 4B3ME 3KZZA 4JI0E 1X6FA 1RQ0A 2KONA 1YUIA 1SR9A 2UU9E 3J81C 2N8XA 2E1MA 2YRHA 1WHNA 2EPZA 2WZOA 2E5LE 3ADLA 1J26A 2EOHA 3EPJA 3HPSA 4DR3E 1L4SA 2F4VE 4X62E 1IMUA 4DMIA 4NHRA 2VRDA 4ZYEA 4Q35B 4X64E 2EN1A 2JPAA 3H09A 4KWYA 2LUPB 4R2RA 4KHPE 2NUEA 1T4NA 1A1LA 3BGHA 5ADZA 1FJGE 4MLVA 5A6AA 2EPLX 3IWDA 2UXDE 4B3TE 2MC6A 2EM5A 4WFTA 2YTOA 2EMBA 2YTDA 3TQMA 1XNQE 4KZSA 2EOJA 2EOOA 2YTFA 1T38A 4X8WA 2LTRA 2DB2A 2L8TA 2LO3A 2EP3A 4LFBE 3J7Yp 2EPMX 1GQEA 1GZ6A 2YTJA 1YZ9A 2EOEA 2YRMA 2V83A 5AE3A 2HC5A 2MKDA 3RMPA 4LFAE 2M9AA 2LT7A 4TUGA 2RSMA 2B9DA 3FIGA 2EORA 2FV4B 2EWLA 2UUBE 2JYAA 2LCEA 2ZM6E 4DR4E 2NUFA 1PJQA 3LLHA 4K0KE 4DR2E 5LLQA 4DV0E 2ENHA 3JAMC 1YUJA 2EM4A 4X65E 1N36E 4R2SA 1BB8A 2FTXB 1Z1BA 2YU5A 2EPAA 1YPNA 2MDRA 4F6NA 1TF3A 4M30A 5LL6R 2EE8A 1G2FC 2DLKA 5A6JA 5A6BD
chains in the Genus database with same CATH topology
3BBGA 2BBGA 1BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBG A;  2BBG A;  1BBG A; 
#chains in the Genus database with same CATH topology
 2KHX A;  2EM6 A;  4DV2 E;  2LVH A;  5KL4 A;  3UK3 C;  2EM2 A;  2UXC E;  2L2M A;  1X5W A;  2EM8 A;  2H36 X;  3ADJ A;  3EPL A;  2DRP A;  1WHQ A;  1N34 E;  1WJP A;  1A1J A;  4F9A B;  2EPP A;  4F2J C;  5AC4 A;  4WSG A;  1N3G A;  1KYQ A;  2EQ0 A;  2HHH E;  1X48 A;  3P1X A;  1JK2 A;  3AUZ A;  1YSA C;  2LMZ A;  2EPU A;  4RH8 A;  4JI7 E;  1NEI A;  1ZR9 A;  2EOM A;  2ADR A;  4DKK A;  1IBM E;  2LUQ A;  1GTK A;  5LMU E;  2M1S A;  3HXL A;  2EL4 A;  3THN A;  1YYW A;  3T1Y E;  4R2A A;  5T6J A;  2DIX A;  1UBD C;  2UUC E;  4B3S E;  4B3R E;  2EMX A;  3JU0 A;  1IQO A;  2EM0 A;  2KOU A;  5KL5 A;  1ZAA C;  4LF8 E;  1EKZ A;  2YTI A;  2V8Q B;  2VF1 A;  4DUY E;  2ODR C;  2EPX A;  1MEY C;  3VYY A;  2WBS A;  5CFF E;  2ELY A;  5A69 A;  1P47 A;  1EH7 A;  1XMQ E;  2YTP A;  2UXB E;  2YTQ A;  1X3C A;  2ODR D;  5F3W A;  4NZV A;  2EM7 A;  3F6H A;  3AV0 A;  1A1K A;  2EOS A;  5AE2 A;  2EN8 A;  1RMD A;  2VQE E;  2EM9 A;  1B69 A;  2V89 A;  4DR7 E;  1SFE A;  4WX9 A;  3DJW A;  1JK1 A;  3ECR A;  4AQY E;  2EOI A;  4LF6 E;  4F6M A;  2MDG A;  1A1H A;  2YTN A;  2RS7 A;  1YYK A;  2WBU A;  5AAS A;  2JR1 A;  4GKK E;  4O24 A;  2YZT A;  1J5E E;  2RPC A;  2ELZ A;  4HTG A;  2D9H A;  2EOX A;  4R2P A;  1UIL A;  2E72 A;  4DV5 E;  2ENC A;  2L6M A;  4NXN E;  4DR6 E;  4JI8 E;  2GLI A;  1DQ3 A;  2LJU A;  2L2N A;  4R2Q A;  2VQF E;  1MGT A;  2YPN A;  5A2Q C;  3C6M A;  2YTG A;  4WSP A;  4J8Z A;  4WXD A;  5KL3 A;  4F54 A;  2JOB A;  4DV4 E;  2EJ4 A;  4X9J A;  1PKP A;  4X66 E;  4JI6 E;  4O5G A;  2LRS A;  4OOG C;  2RS6 A;  4O43 A;  4JI3 E;  5KL2 A;  1FKA E;  2EL5 A;  1ZU1 A;  3C6K A;  1N32 E;  4DV6 E;  2CPN A;  4LFC E;  4Q28 A;  4P7D A;  4M9V C;  2EOQ A;  4R2E A;  3BBG A;  4P78 A;  1KJK A;  5BR8 E;  1X49 A;  1XMO E;  2V87 A;  4GKJ E;  2CSH A;  2DGC A;  1X6H A;  5KL7 A;  4DV3 E;  4N4R B;  2G7H A;  1X6E A;  4YY3 E;  3DF6 A;  1IBL E;  3M99 B;  4JV5 E;  2A25 A;  2MC5 A;  2YU8 A;  4BS9 A;  4LF9 E;  3OML A;  2EN3 A;  4JI2 E;  2VE7 C;  2HJJ A;  1A1F A;  5KL6 A;  2EN4 A;  3JTZ A;  2CTD A;  2N3H A;  2DLQ A;  1STU A;  2EPN A;  2EMY A;  2L3C A;  5DNY A;  1YYO A;  1DI2 A;  3KZY A;  2ENA A;  4JYA E;  2YTE A;  4WPY A;  4BHB A;  4DUZ E;  3QG5 C;  3EPH A;  2BB8 A;  3HTX A;  2JVA A;  1O0W A;  2EMZ A;  2V88 A;  3EPK A;  1RC7 A;  3ADI A;  4JI1 E;  4ZYG A;  2EOF A;  4M2Z A;  4R03 A;  4L8N A;  3VK6 A;  2BBG A;  2EOY A;  3VHT B;  2FGG A;  4LTY A;  3J7A G;  2J7J A;  1UN6 B;  2DMY A;  3ZOQ B;  5LMN E;  4TUI A;  4NXM E;  2WBT A;  4BC9 A;  4DV1 E;  1T4L B;  2EZ6 A;  2F8B A;  1IQS A;  3ADG A;  4R2D A;  1LLM C;  3HPZ A;  2RTX A;  4BBY A;  4WXC A;  2EN6 A;  4OX9 E;  2JOX A;  1HNW E;  2EPC A;  2N3G A;  4GEQ B;  4LF5 E;  2B7T A;  2EPO A;  2EPR A;  4DV7 E;  4HEI A;  3J80 C;  2GHF A;  1HNX E;  2EOZ A;  5AE1 A;  2NAB A;  4IJD A;  1A1G A;  5IV8 B;  1BBG A;  1BBO A;  1DGC A;  4R2C A;  4JI5 E;  1TN9 A;  4DR5 E;  2YT4 A;  2B7V A;  2B3T B;  2EMA A;  2UUA E;  5A6B A;  1ZBT A;  3L00 A;  4YHH E;  2EMC A;  4I8O A;  3IWC A;  1PDA A;  2IHR 1;  2R76 A;  4L5N C;  1WRJ A;  1I94 E;  3THO B;  1XNR E;  2EQ1 A;  2RSI A;  2JXP A;  2NUG A;  2CT1 A;  2L92 A;  4ZYH A;  5A6K A;  4R8O A;  4WYQ B;  2V86 A;  2I13 A;  2DMI A;  2YSP A;  1T4O A;  3BID A;  2PRT A;  4FK5 C;  1AH5 A;  1PJS A;  2EMG A;  2EQ3 A;  1A1I A;  2NA2 A;  2DSY A;  4F9C B;  2EMK A;  2EMH A;  2M7Q A;  4BCA A;  1T39 A;  1N33 E;  1YFH A;  3EQ1 A;  1TF6 A;  1F2I G;  4LF4 E;  2GPI A;  2WCC 3;  1EH8 A;  3F6G A;  1HR0 E;  2K7I A;  3C4B A;  2MKN A;  4LU9 A;  2L2K B;  2JY9 A;  2V85 A;  2EN7 A;  2YSO A;  4O4K A;  5IWA E;  2EPK X;  5FLX C;  4RHB B;  3VYX A;  2EM3 A;  5IXM B;  2M4I A;  2EMW A;  3MHH C;  3C4T A;  4M0V A;  2JP9 A;  2LJH A;  3KWR A;  2EML A;  4F9B B;  1QNT A;  5AC5 A;  3LML A;  3OTO E;  4BMJ A;  1IBK E;  2YRK A;  5IT9 C;  5TSE A;  2JWO A;  4MLQ A;  4LF7 E;  2R1F A;  2LBS B;  2LV2 A;  2EN2 A;  4BHC A;  2K4V A;  4GZN C;  4ZYD A;  3K6Q A;  2HGH A;  2L3J A;  1ZBQ A;  3IWB A;  4BC7 A;  4IS1 C;  2Q8U A;  3MSW A;  1HNZ E;  2I9I A;  3BF2 A;  1AAY A;  1NCS A;  2L33 A;  3T1H E;  2LE2 A;  2EMF A;  4JI4 E;  1G2D C;  2EMI A;  1QU6 A;  1WXR A;  2LTS A;  2YWQ A;  4DR1 E;  2EL6 A;  1X47 A;  1EH6 A;  2RQL A;  1PJT A;  3HQ1 A;  3MHS C;  1UHZ A;  4B3M E;  3KZZ A;  4JI0 E;  1X6F A;  1RQ0 A;  2KON A;  1YUI A;  1SR9 A;  2UU9 E;  3J81 C;  2N8X A;  2E1M A;  2YRH A;  1WHN A;  2EPZ A;  2WZO A;  2E5L E;  3ADL A;  1J26 A;  2EOH A;  3EPJ A;  3HPS A;  4DR3 E;  1L4S A;  2F4V E;  4X62 E;  1IMU A;  4DMI A;  4NHR A;  2VRD A;  4ZYE A;  4Q35 B;  4X64 E;  2EN1 A;  2JPA A;  3H09 A;  4KWY A;  2LUP B;  4R2R A;  4KHP E;  2NUE A;  1T4N A;  1A1L A;  3BGH A;  5ADZ A;  1FJG E;  4MLV A;  5A6A A;  2EPL X;  3IWD A;  2UXD E;  4B3T E;  2MC6 A;  2EM5 A;  4WFT A;  2YTO A;  2EMB A;  2YTD A;  3TQM A;  1XNQ E;  4KZS A;  2EOJ A;  2EOO A;  2YTF A;  1T38 A;  4X8W A;  2LTR A;  2DB2 A;  2L8T A;  2LO3 A;  2EP3 A;  4LFB E;  3J7Y p;  2EPM X;  1GQE A;  1GZ6 A;  2YTJ A;  1YZ9 A;  2EOE A;  2YRM A;  2V83 A;  5AE3 A;  2HC5 A;  2MKD A;  3RMP A;  4LFA E;  2M9A A;  2LT7 A;  4TUG A;  2RSM A;  2B9D A;  3FIG A;  2EOR A;  2FV4 B;  2EWL A;  2UUB E;  2JYA A;  2LCE A;  2ZM6 E;  4DR4 E;  2NUF A;  1PJQ A;  3LLH A;  4K0K E;  4DR2 E;  5LLQ A;  4DV0 E;  2ENH A;  3JAM C;  1YUJ A;  2EM4 A;  4X65 E;  1N36 E;  4R2S A;  1BB8 A;  2FTX B;  1Z1B A;  2YU5 A;  2EPA A;  1YPN A;  2MDR A;  4F6N A;  1TF3 A;  4M30 A;  5LL6 R;  2EE8 A;  1G2F C;  2DLK A;  5A6J A;  5A6B D; 
#chains in the Genus database with same CATH homology
 3BBG A;  2BBG A;  1BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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