3BBGA

Multi-conformer structure of ragweed pollen allergen from ambrosia trifida v, nmr, 2 structures
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 3bbgA00
3BBGA 1BBGA 2BBGA
chains in the Genus database with same CATH superfamily
4O24A 2YTFA 2LMZA 2EPXA 2N3GA 3VHTB 4DV3E 2HJJA 2ZM6E 1YYKA 3MHHC 4F9BB 2UUCE 1DQ3A 2YTIA 5CFFE 2EJ4A 2D9HA 2M7QA 4KWYA 2EMCA 5T6JA 2UXBE 2EMHA 1T38A 1ZR9A 1A1FA 2YPNA 5BR8E 1XNQE 1YYWA 2WBUA 2HGHA 2KHXA 1WRJA 2EN7A 1YZ9A 3T1HE 2EOJA 4NXME 4BBYA 1TF3A 4BMJA 2NA2A 3KWRA 2LRSA 2ENAA 2K4VA 4OOGC 1P47A 2UUAE 3J80C 2MC5A 2WBSA 1BBOA 1EH8A 1O0WA 2YTDA 1YUJA 4RHBB 1RQ0A 2F8BA 5KL3A 4O4KA 4R03A 3ADIA 3HQ1A 4MLVA 1ZAAC 5KL6A 1XMQE 2B9DA 2DGCA 2UU9E 2G7HA 2JPAA 4M30A 2J7JA 2LT7A 4GEQB 4DR2E 4R2PA 2L2MA 2FGGA 4WXDA 2L2KB 2YTGA 1SR9A 1X6FA 1PKPA 2V85A 4R8OA 4DMIA 1IQSA 2EOOA 2M1SA 2F4VE 1WHNA 2RTXA 5IXMB 5TSEA 2EM4A 2EPZA 2ODRD 3BBGA 4R2CA 5LLQA 4WPYA 3JU0A 3BF2A 2DRPA 2JR1A 4F6MA 2E5LE 2WCC3 4AQYE 3OMLA 1Z1BA 3FIGA 1J5EE 4J8ZA 4WSGA 2WZOA 2N8XA 5A6JA 5KL4A 1IBLE 4NXNE 4P78A 4DV2E 3P1XA 4JI7E 2EOQA 2LBSB 4LF4E 1WJPA 2EN8A 2EPUA 1X3CA 2MKDA 5AC4A 1IMUA 4DR3E 1HNXE 1HNZE 2EL5A 1HNWE 4LFCE 3F6HA 4LF6E 2MC6A 4I8OA 2ELYA 1XMOE 3DJWA 3KZZA 1G2DC 2EP3A 1WHQA 2EPPA 4M9VC 2DMIA 5FLXC 2JYAA 2L3JA 2YTPA 4RH8A 1A1GA 4B3SE 1ZBQA 2JY9A 4LFAE 4F9CB 2EQ0A 1TF6A 5A6BA 2GPIA 2ENCA 2DSYA 4F2JC 2FTXB 4M0VA 4JI0E 1GTKA 3C6MA 2HC5A 3EPHA 1N34E 4X62E 2RS7A 4X66E 1LLMC 1KYQA 3ADLA 3MHSC 1X49A 4NZVA 4Q28A 4R2AA 1UBDC 3VYXA 1UILA 2EPMX 4JV5E 1MGTA 3JAMC 4BC9A 3H09A 1X6HA 1T39A 3J81C 2YWQA 3TQMA 1STUA 2VF1A 4KZSA 4R2SA 3K6QA 5AE2A 2FV4B 5AE1A 2YTJA 4ZYDA 2GHFA 1DI2A 4X64E 1A1JA 2M9AA 2EE8A 2JVAA 4GKJE 4DR7E 2EMGA 5AASA 3EPLA 2EMLA 5LMNE 2EOYA 1YUIA 1N32E 2H36X 2PRTA 4TUGA 4ZYEA 1RC7A 2V87A 3BGHA 1UHZA 2MDGA 4L8NA 2ELZA 5ADZA 4YY3E 2LCEA 1PJTA 2JWOA 2LJUA 2V89A 4DV6E 4DV5E 3IWCA 5AC5A 1QU6A 4LF5E 2NUFA 2CSHA 2EOSA 2JOXA 2E72A 2EMAA 2LE2A 3EPJA 1T4OA 3RMPA 2EN6A 1DGCA 4DR4E 4IJDA 1XNRE 2EPAA 5A2QC 4LF7E 2EN3A 1RMDA 2ENHA 2EN2A 2YTQA 5DNYA 2EMZA 2EMYA 3EQ1A 2YRKA 2I13A 4LFBE 3ECRA 2B7VA 5IV8B 4WX9A 4DR5E 3C6KA 2EPCA 2K7IA 3THNA 3F6GA 1KJKA 4DR1E 2VQEE 1AAYA 1N36E 4DR6E 3M99B 5IT9C 1T4NA 2IHR1 2LTSA 4WYQB 2YTOA 1IBKE 5IWAE 2DIXA 5AE3A 1A1HA 4X65E 2EN1A 4FK5C 2EMWA 2RSMA 2EM2A 2EWLA 2EM9A 2I9IA 2RS6A 1B69A 2YRHA 4LTYA 2EM0A 4BC7A 2EMIA 4F9AB 3UK3C 1N3GA 1JK2A 2L2NA 4F54A 1GZ6A 2EN4A 2L33A 2N3HA 2EOIA 2B3TB 5A6KA 2L6MA 3QG5C 1IQOA 4R2EA 5A6BD 2BB8A 1MEYC 2DB2A 3AV0A 2EMBA 1GQEA 2EPKX 1PJQA 1A1IA 4YHHE 2ADRA 2EOZA 2V86A 4HTGA 5LMUE 1TN9A 2YU5A 4JI4E 2YSOA 4O5GA 1YSAC 2EMXA 3EPKA 1JK1A 1EH7A 4M2ZA 2KONA 3HXLA 2LUQA 4JYAE 1NEIA 2JP9A 4B3RE 1YYOA 4ZYHA 4JI2E 1YPNA 3IWDA 4BHBA 4BHCA 2WBTA 1EH6A 2UXDE 2E1MA 2B7TA 2NABA 2EQ3A 1F2IG 2EM8A 3HTXA 2BBGA 1A1LA 4WXCA 2MDRA 3OTOE 2L3CA 4OX9E 2YT4A 4DV4E 4BS9A 5F3WA 4F6NA 1J26A 2YTEA 2EM6A 2JOBA 3J7AG 2EZ6A 2V8QB 3VYYA 4B3ME 4P7DA 2EOHA 5A6AA 4N4RB 4JI1E 4BCAA 1YFHA 3IWBA 2CTDA 2LVHA 4WFTA 2V83A 3VK6A 4KHPE 1BB8A 2EOXA 1SFEA 2RSIA 4GZNC 2Q8UA 2RQLA 2EL4A 4JI8E 2EM3A 2HHHE 4LF8E 1X47A 4JI3E 2CT1A 2EORA 3HPZA 3C4BA 2KOUA 3KZYA 1ZBTA 5LL6R 3ADGA 1X5WA 2EL6A 2R76A 1UN6B 2LUPB 5KL7A 2GLIA 5KL2A 3L00A 1AH5A 4NHRA 2LJHA 2LV2A 2EOFA 1X6EA 4DV7E 2LO3A 2V88A 2L8TA 2EMKA 4L5NC 1WXRA 4X8WA 4WSPA 2EPRA 4HEIA 4R2RA 4ZYGA 2M4IA 5A69A 5KL5A 2EOMA 1L4SA 1IBME 1BBGA 3C4TA 1HR0E 1NCSA 3JTZA 2YTNA 2VQFE 3ZOQB 3J7Yp 2YRMA 2DLKA 1QNTA 4GKKE 4JI5E 3HPSA 3LMLA 2NUGA 2EOEA 2YSPA 3DF6A 1G2FC 2UUBE 2L92A 4X9JA 3MSWA 2VRDA 4DUYE 1ZU1A 4DKKA 2A25A 4DUZE 2MKNA 4DV0E 2YU8A 3ADJA 2JXPA 1FJGE 1N33E 3AUZA 2EPLX 2DMYA 2UXCE 2LTRA 1EKZA 4TUIA 3LLHA 1I94E 2R1FA 4MLQA 2RPCA 2EPNA 4B3TE 4Q35B 4LU9A 2VE7C 2EM7A 4DV1E 4IS1C 1A1KA 4K0KE 1PJSA 2NUEA 2EMFA 2YZTA 1X48A 2EQ1A 2EM5A 2DLQA 2ODRC 1T4LB 2EPOA 4JI6E 4R2QA 4LF9E 2CPNA 4O43A 1PDAA 3THOB 4R2DA 3T1YE 3BIDA 1FKAE
chains in the Genus database with same CATH topology
3BBGA 1BBGA 2BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBG A;  1BBG A;  2BBG A; 
#chains in the Genus database with same CATH topology
 4O24 A;  2YTF A;  2LMZ A;  2EPX A;  2N3G A;  3VHT B;  4DV3 E;  2HJJ A;  2ZM6 E;  1YYK A;  3MHH C;  4F9B B;  2UUC E;  1DQ3 A;  2YTI A;  5CFF E;  2EJ4 A;  2D9H A;  2M7Q A;  4KWY A;  2EMC A;  5T6J A;  2UXB E;  2EMH A;  1T38 A;  1ZR9 A;  1A1F A;  2YPN A;  5BR8 E;  1XNQ E;  1YYW A;  2WBU A;  2HGH A;  2KHX A;  1WRJ A;  2EN7 A;  1YZ9 A;  3T1H E;  2EOJ A;  4NXM E;  4BBY A;  1TF3 A;  4BMJ A;  2NA2 A;  3KWR A;  2LRS A;  2ENA A;  2K4V A;  4OOG C;  1P47 A;  2UUA E;  3J80 C;  2MC5 A;  2WBS A;  1BBO A;  1EH8 A;  1O0W A;  2YTD A;  1YUJ A;  4RHB B;  1RQ0 A;  2F8B A;  5KL3 A;  4O4K A;  4R03 A;  3ADI A;  3HQ1 A;  4MLV A;  1ZAA C;  5KL6 A;  1XMQ E;  2B9D A;  2DGC A;  2UU9 E;  2G7H A;  2JPA A;  4M30 A;  2J7J A;  2LT7 A;  4GEQ B;  4DR2 E;  4R2P A;  2L2M A;  2FGG A;  4WXD A;  2L2K B;  2YTG A;  1SR9 A;  1X6F A;  1PKP A;  2V85 A;  4R8O A;  4DMI A;  1IQS A;  2EOO A;  2M1S A;  2F4V E;  1WHN A;  2RTX A;  5IXM B;  5TSE A;  2EM4 A;  2EPZ A;  2ODR D;  3BBG A;  4R2C A;  5LLQ A;  4WPY A;  3JU0 A;  3BF2 A;  2DRP A;  2JR1 A;  4F6M A;  2E5L E;  2WCC 3;  4AQY E;  3OML A;  1Z1B A;  3FIG A;  1J5E E;  4J8Z A;  4WSG A;  2WZO A;  2N8X A;  5A6J A;  5KL4 A;  1IBL E;  4NXN E;  4P78 A;  4DV2 E;  3P1X A;  4JI7 E;  2EOQ A;  2LBS B;  4LF4 E;  1WJP A;  2EN8 A;  2EPU A;  1X3C A;  2MKD A;  5AC4 A;  1IMU A;  4DR3 E;  1HNX E;  1HNZ E;  2EL5 A;  1HNW E;  4LFC E;  3F6H A;  4LF6 E;  2MC6 A;  4I8O A;  2ELY A;  1XMO E;  3DJW A;  3KZZ A;  1G2D C;  2EP3 A;  1WHQ A;  2EPP A;  4M9V C;  2DMI A;  5FLX C;  2JYA A;  2L3J A;  2YTP A;  4RH8 A;  1A1G A;  4B3S E;  1ZBQ A;  2JY9 A;  4LFA E;  4F9C B;  2EQ0 A;  1TF6 A;  5A6B A;  2GPI A;  2ENC A;  2DSY A;  4F2J C;  2FTX B;  4M0V A;  4JI0 E;  1GTK A;  3C6M A;  2HC5 A;  3EPH A;  1N34 E;  4X62 E;  2RS7 A;  4X66 E;  1LLM C;  1KYQ A;  3ADL A;  3MHS C;  1X49 A;  4NZV A;  4Q28 A;  4R2A A;  1UBD C;  3VYX A;  1UIL A;  2EPM X;  4JV5 E;  1MGT A;  3JAM C;  4BC9 A;  3H09 A;  1X6H A;  1T39 A;  3J81 C;  2YWQ A;  3TQM A;  1STU A;  2VF1 A;  4KZS A;  4R2S A;  3K6Q A;  5AE2 A;  2FV4 B;  5AE1 A;  2YTJ A;  4ZYD A;  2GHF A;  1DI2 A;  4X64 E;  1A1J A;  2M9A A;  2EE8 A;  2JVA A;  4GKJ E;  4DR7 E;  2EMG A;  5AAS A;  3EPL A;  2EML A;  5LMN E;  2EOY A;  1YUI A;  1N32 E;  2H36 X;  2PRT A;  4TUG A;  4ZYE A;  1RC7 A;  2V87 A;  3BGH A;  1UHZ A;  2MDG A;  4L8N A;  2ELZ A;  5ADZ A;  4YY3 E;  2LCE A;  1PJT A;  2JWO A;  2LJU A;  2V89 A;  4DV6 E;  4DV5 E;  3IWC A;  5AC5 A;  1QU6 A;  4LF5 E;  2NUF A;  2CSH A;  2EOS A;  2JOX A;  2E72 A;  2EMA A;  2LE2 A;  3EPJ A;  1T4O A;  3RMP A;  2EN6 A;  1DGC A;  4DR4 E;  4IJD A;  1XNR E;  2EPA A;  5A2Q C;  4LF7 E;  2EN3 A;  1RMD A;  2ENH A;  2EN2 A;  2YTQ A;  5DNY A;  2EMZ A;  2EMY A;  3EQ1 A;  2YRK A;  2I13 A;  4LFB E;  3ECR A;  2B7V A;  5IV8 B;  4WX9 A;  4DR5 E;  3C6K A;  2EPC A;  2K7I A;  3THN A;  3F6G A;  1KJK A;  4DR1 E;  2VQE E;  1AAY A;  1N36 E;  4DR6 E;  3M99 B;  5IT9 C;  1T4N A;  2IHR 1;  2LTS A;  4WYQ B;  2YTO A;  1IBK E;  5IWA E;  2DIX A;  5AE3 A;  1A1H A;  4X65 E;  2EN1 A;  4FK5 C;  2EMW A;  2RSM A;  2EM2 A;  2EWL A;  2EM9 A;  2I9I A;  2RS6 A;  1B69 A;  2YRH A;  4LTY A;  2EM0 A;  4BC7 A;  2EMI A;  4F9A B;  3UK3 C;  1N3G A;  1JK2 A;  2L2N A;  4F54 A;  1GZ6 A;  2EN4 A;  2L33 A;  2N3H A;  2EOI A;  2B3T B;  5A6K A;  2L6M A;  3QG5 C;  1IQO A;  4R2E A;  5A6B D;  2BB8 A;  1MEY C;  2DB2 A;  3AV0 A;  2EMB A;  1GQE A;  2EPK X;  1PJQ A;  1A1I A;  4YHH E;  2ADR A;  2EOZ A;  2V86 A;  4HTG A;  5LMU E;  1TN9 A;  2YU5 A;  4JI4 E;  2YSO A;  4O5G A;  1YSA C;  2EMX A;  3EPK A;  1JK1 A;  1EH7 A;  4M2Z A;  2KON A;  3HXL A;  2LUQ A;  4JYA E;  1NEI A;  2JP9 A;  4B3R E;  1YYO A;  4ZYH A;  4JI2 E;  1YPN A;  3IWD A;  4BHB A;  4BHC A;  2WBT A;  1EH6 A;  2UXD E;  2E1M A;  2B7T A;  2NAB A;  2EQ3 A;  1F2I G;  2EM8 A;  3HTX A;  2BBG A;  1A1L A;  4WXC A;  2MDR A;  3OTO E;  2L3C A;  4OX9 E;  2YT4 A;  4DV4 E;  4BS9 A;  5F3W A;  4F6N A;  1J26 A;  2YTE A;  2EM6 A;  2JOB A;  3J7A G;  2EZ6 A;  2V8Q B;  3VYY A;  4B3M E;  4P7D A;  2EOH A;  5A6A A;  4N4R B;  4JI1 E;  4BCA A;  1YFH A;  3IWB A;  2CTD A;  2LVH A;  4WFT A;  2V83 A;  3VK6 A;  4KHP E;  1BB8 A;  2EOX A;  1SFE A;  2RSI A;  4GZN C;  2Q8U A;  2RQL A;  2EL4 A;  4JI8 E;  2EM3 A;  2HHH E;  4LF8 E;  1X47 A;  4JI3 E;  2CT1 A;  2EOR A;  3HPZ A;  3C4B A;  2KOU A;  3KZY A;  1ZBT A;  5LL6 R;  3ADG A;  1X5W A;  2EL6 A;  2R76 A;  1UN6 B;  2LUP B;  5KL7 A;  2GLI A;  5KL2 A;  3L00 A;  1AH5 A;  4NHR A;  2LJH A;  2LV2 A;  2EOF A;  1X6E A;  4DV7 E;  2LO3 A;  2V88 A;  2L8T A;  2EMK A;  4L5N C;  1WXR A;  4X8W A;  4WSP A;  2EPR A;  4HEI A;  4R2R A;  4ZYG A;  2M4I A;  5A69 A;  5KL5 A;  2EOM A;  1L4S A;  1IBM E;  1BBG A;  3C4T A;  1HR0 E;  1NCS A;  3JTZ A;  2YTN A;  2VQF E;  3ZOQ B;  3J7Y p;  2YRM A;  2DLK A;  1QNT A;  4GKK E;  4JI5 E;  3HPS A;  3LML A;  2NUG A;  2EOE A;  2YSP A;  3DF6 A;  1G2F C;  2UUB E;  2L92 A;  4X9J A;  3MSW A;  2VRD A;  4DUY E;  1ZU1 A;  4DKK A;  2A25 A;  4DUZ E;  2MKN A;  4DV0 E;  2YU8 A;  3ADJ A;  2JXP A;  1FJG E;  1N33 E;  3AUZ A;  2EPL X;  2DMY A;  2UXC E;  2LTR A;  1EKZ A;  4TUI A;  3LLH A;  1I94 E;  2R1F A;  4MLQ A;  2RPC A;  2EPN A;  4B3T E;  4Q35 B;  4LU9 A;  2VE7 C;  2EM7 A;  4DV1 E;  4IS1 C;  1A1K A;  4K0K E;  1PJS A;  2NUE A;  2EMF A;  2YZT A;  1X48 A;  2EQ1 A;  2EM5 A;  2DLQ A;  2ODR C;  1T4L B;  2EPO A;  4JI6 E;  4R2Q A;  4LF9 E;  2CPN A;  4O43 A;  1PDA A;  3THO B;  4R2D A;  3T1Y E;  3BID A;  1FKA E; 
#chains in the Genus database with same CATH homology
 3BBG A;  1BBG A;  2BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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