3BBGA

Multi-conformer structure of ragweed pollen allergen from ambrosia trifida v, nmr, 2 structures
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
b'DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords POLLEN ALLERGEN 5
publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 3bbgA00
2BBGA 3BBGA 1BBGA
chains in the Genus database with same CATH superfamily
2L2MA 4BHBA 1A1LA 4DV3E 2EZ6A 4M2ZA 2RTXA 4B3ME 2EM5A 2DLQA 2GPIA 2HJJA 3HPSA 4ZYGA 2LE2A 2BB8A 4X9JA 1X6EA 2LTSA 2M1SA 4F54A 4P78A 4RHBB 3ADLA 3DJWA 3KZYA 4MLVA 2MC6A 4O24A 1RQ0A 2UXDE 2EOHA 4KZSA 4DR2E 5IXMB 2JXPA 3FIGA 4M30A 3J7AG 3THNA 5F3WA 1X47A 4DV5E 1I94E 2ODRC 5T6JA 3DF6A 1XMOE 4Q28A 4DV0E 2A25A 1Z1BA 2R1FA 2EM9A 1STUA 5LMUE 5IWAE 1YUIA 1ZAAC 2HGHA 2EWLA 2JR1A 1T4OA 2UUBE 1FJGE 2EMCA 2EOIA 2EMZA 4GKKE 2YU8A 1XNQE 4M9VC 2EMAA 2N3HA 4WXDA 2EPZA 1WHNA 2V86A 3C4TA 1UN6B 5DNYA 2YZTA 4WYQB 1IQOA 4LF9E 1JK2A 2V8QB 4LFCE 2CSHA 2WBUA 4ZYHA 3EPLA 3UK3C 1YYWA 3EPHA 4JI5E 2EE8A 2DMIA 1DI2A 4GZNC 4HTGA 2YTFA 5LL6R 4YHHE 4Q35B 2VF1A 1PJSA 3OTOE 5A6BD 4IJDA 4JI7E 3KWRA 4ZYDA 3ZOQB 2YPNA 2VQFE 2RSIA 1L4SA 3VHTB 2JOBA 2LV2A 3TQMA 4F6NA 4LU9A 2L6MA 2V87A 1P47A 2EPCA 2YSPA 1YZ9A 3MSWA 1YSAC 2WBTA 4LFAE 2FGGA 2EM7A 2ENHA 2YTOA 3BF2A 5IV8B 3C4BA 2WBSA 4M0VA 4N4RB 2WZOA 1N32E 5ADZA 2MC5A 2EMYA 4DKKA 4K0KE 1RMDA 2B7TA 2EOSA 1X3CA 1IBKE 2MKNA 4F9AB 1T39A 4NXME 4P7DA 4X8WA 2EMFA 2EPPA 2L33A 1J26A 1N3GA 1XMQE 4BBYA 1X48A 2LJHA 1A1IA 4DV6E 4R2CA 5AE1A 4L8NA 2EMBA 5A2QC 1QU6A 2YU5A 2YTGA 2DLKA 2B3TB 3KZZA 2PRTA 5AE2A 2N8XA 4R2QA 2EM0A 2L2KB 3IWBA 2YTDA 2UXBE 2RS6A 3BGHA 1NCSA 5KL7A 1YUJA 2EM6A 4YY3E 2EOQA 2EMHA 3JAMC 4WFTA 2EQ0A 1TF3A 2EPLX 4BC9A 2F4VE 2G7HA 5TSEA 2BBGA 2EN3A 2EMIA 1F2IG 4ZYEA 3C6KA 1AAYA 1SR9A 4JYAE 2L3CA 3BBGA 3T1YE 1A1HA 3OMLA 4KHPE 2ELZA 1HR0E 2VRDA 4I8OA 4TUIA 1JK1A 1NEIA 1FKAE 1YPNA 3HPZA 2GLIA 1IQSA 4DMIA 2ADRA 1N34E 5A6BA 2LBSB 2VE7C 2EOYA 3ECRA 2YRMA 2LCEA 4F9CB 3MHSC 3EQ1A 2MKDA 2EPKX 4WPYA 2E1MA 2YTQA 4L5NC 4AQYE 3RMPA 5BR8E 1G2FC 2L2NA 4DV2E 3HXLA 4GEQB 5A6KA 1IBME 2ELYA 2H36X 3LLHA 1EKZA 2UU9E 5KL3A 4BCAA 4OX9E 2K4VA 2YTJA 5A6AA 2NUFA 2DGCA 2UXCE 5CFFE 5KL5A 3F6GA 4J8ZA 5FLXC 3EPJA 1GZ6A 1QNTA 2YWQA 2EN8A 2EM2A 4R2RA 2EN4A 1PJTA 2IHR1 4B3TE 3JU0A 3JTZA 4IS1C 3J7Yp 1BBOA 2NUEA 2EORA 2ZM6E 4B3RE 1UHZA 1DQ3A 4B3SE 2L3JA 1X5WA 3M99B 2E5LE 2JYAA 2EPUA 4DV4E 1X49A 1HNXE 1A1JA 5AE3A 4R2EA 5IT9C 2EM8A 2LRSA 2V83A 4DV1E 1EH7A 1A1FA 4BS9A 2EQ1A 1ZU1A 2JWOA 2ENAA 2EMXA 2LT7A 2LUQA 1WRJA 3VK6A 2RPCA 2EPNA 2EOXA 2EL5A 3P1XA 4WSGA 1T4NA 3F6HA 2M9AA 4LF4E 4LFBE 4WSPA 2N3GA 5AC4A 1A1GA 2UUCE 1PKPA 2EMLA 2F8BA 2NUGA 4DV7E 3BIDA 3VYXA 2NABA 2M7QA 1BBGA 2V85A 1SFEA 2EL4A 4HEIA 3J81C 4X62E 2EMKA 2EOZA 4NZVA 2B9DA 1G2DC 4LF8E 4DR1E 2EN6A 1T38A 1GQEA 1IMUA 1MGTA 1KYQA 2V88A 1UBDC 4O43A 4O5GA 4MLQA 3LMLA 2LUPB 2DIXA 1WXRA 4DR6E 1ZBTA 2YTNA 1PJQA 1X6FA 2JP9A 2EM3A 2KOUA 3QG5C 2EM4A 1UILA 1KJKA 1LLMC 3K6QA 4RH8A 4X64E 2YTPA 1DGCA 4LF7E 2B7VA 5AASA 2LTRA 2LMZA 2JPAA 5A6JA 4TUGA 3AV0A 1XNRE 2EPRA 3ADJA 4DUYE 2YT4A 4F6MA 4DUZE 4LF5E 3C6MA 4JV5E 5A69A 4R2PA 4R2AA 1BB8A 3J80C 2E72A 2ENCA 2MDRA 1HNZE 2L92A 2EN7A 2NA2A 2RQLA 5KL6A 2CTDA 2CT1A 2YSOA 4OOGC 1O0WA 3ADGA 1N36E 1WJPA 4JI0E 2EMGA 4JI4E 4LTYA 3IWCA 1AH5A 2D9HA 1YYOA 1MEYC 1EH8A 2EPXA 1YYKA 4JI2E 2VQEE 2EPAA 2DMYA 2V89A 2EL6A 1RC7A 2DB2A 4R8OA 4DR4E 1GTKA 2LJUA 3VYYA 1T4LB 2DRPA 2I9IA 5LLQA 2EOOA 3HTXA 2EP3A 4F9BB 3AUZA 3ADIA 2R76A 2FTXB 2EN2A 4BHCA 4DR7E 2YTIA 1HNWE 2EPOA 2EPMX 2KHXA 3IWDA 4R03A 2GHFA 4X65E 4R2SA 4FK5C 2RS7A 2KONA 2DSYA 2EN1A 2YRKA 1TF6A 1TN9A 3EPKA 4WX9A 2WCC3 4JI8E 2JVAA 1ZBQA 2M4IA 1EH6A 2EMWA 2LVHA 3HQ1A 4JI1E 2JOXA 5LMNE 2EQ3A 2HC5A 4GKJE 4R2DA 2EOFA 4KWYA 2EJ4A 4LF6E 5AC5A 1ZR9A 4O4KA 1IBLE 2I13A 4NXNE 2HHHE 4NHRA 2RSMA 4JI3E 3L00A 2JY9A 4BC7A 2YTEA 2K7IA 2MDGA 2LO3A 3THOB 5KL4A 1WHQA 1B69A 3MHHC 4DR3E 4BMJA 1J5EE 2UUAE 2EOMA 3H09A 2ODRD 2Q8UA 5KL2A 4X66E 2YRHA 1X6HA 4DR5E 1PDAA 2J7JA 1A1KA 3T1HE 1YFHA 4F2JC 4JI6E 1N33E 2FV4B 2EOJA 2L8TA 2CPNA 4WXCA 2EOEA
chains in the Genus database with same CATH topology
2BBGA 3BBGA 1BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BBG A;  3BBG A;  1BBG A; 
#chains in the Genus database with same CATH topology
 2L2M A;  4BHB A;  1A1L A;  4DV3 E;  2EZ6 A;  4M2Z A;  2RTX A;  4B3M E;  2EM5 A;  2DLQ A;  2GPI A;  2HJJ A;  3HPS A;  4ZYG A;  2LE2 A;  2BB8 A;  4X9J A;  1X6E A;  2LTS A;  2M1S A;  4F54 A;  4P78 A;  4RHB B;  3ADL A;  3DJW A;  3KZY A;  4MLV A;  2MC6 A;  4O24 A;  1RQ0 A;  2UXD E;  2EOH A;  4KZS A;  4DR2 E;  5IXM B;  2JXP A;  3FIG A;  4M30 A;  3J7A G;  3THN A;  5F3W A;  1X47 A;  4DV5 E;  1I94 E;  2ODR C;  5T6J A;  3DF6 A;  1XMO E;  4Q28 A;  4DV0 E;  2A25 A;  1Z1B A;  2R1F A;  2EM9 A;  1STU A;  5LMU E;  5IWA E;  1YUI A;  1ZAA C;  2HGH A;  2EWL A;  2JR1 A;  1T4O A;  2UUB E;  1FJG E;  2EMC A;  2EOI A;  2EMZ A;  4GKK E;  2YU8 A;  1XNQ E;  4M9V C;  2EMA A;  2N3H A;  4WXD A;  2EPZ A;  1WHN A;  2V86 A;  3C4T A;  1UN6 B;  5DNY A;  2YZT A;  4WYQ B;  1IQO A;  4LF9 E;  1JK2 A;  2V8Q B;  4LFC E;  2CSH A;  2WBU A;  4ZYH A;  3EPL A;  3UK3 C;  1YYW A;  3EPH A;  4JI5 E;  2EE8 A;  2DMI A;  1DI2 A;  4GZN C;  4HTG A;  2YTF A;  5LL6 R;  4YHH E;  4Q35 B;  2VF1 A;  1PJS A;  3OTO E;  5A6B D;  4IJD A;  4JI7 E;  3KWR A;  4ZYD A;  3ZOQ B;  2YPN A;  2VQF E;  2RSI A;  1L4S A;  3VHT B;  2JOB A;  2LV2 A;  3TQM A;  4F6N A;  4LU9 A;  2L6M A;  2V87 A;  1P47 A;  2EPC A;  2YSP A;  1YZ9 A;  3MSW A;  1YSA C;  2WBT A;  4LFA E;  2FGG A;  2EM7 A;  2ENH A;  2YTO A;  3BF2 A;  5IV8 B;  3C4B A;  2WBS A;  4M0V A;  4N4R B;  2WZO A;  1N32 E;  5ADZ A;  2MC5 A;  2EMY A;  4DKK A;  4K0K E;  1RMD A;  2B7T A;  2EOS A;  1X3C A;  1IBK E;  2MKN A;  4F9A B;  1T39 A;  4NXM E;  4P7D A;  4X8W A;  2EMF A;  2EPP A;  2L33 A;  1J26 A;  1N3G A;  1XMQ E;  4BBY A;  1X48 A;  2LJH A;  1A1I A;  4DV6 E;  4R2C A;  5AE1 A;  4L8N A;  2EMB A;  5A2Q C;  1QU6 A;  2YU5 A;  2YTG A;  2DLK A;  2B3T B;  3KZZ A;  2PRT A;  5AE2 A;  2N8X A;  4R2Q A;  2EM0 A;  2L2K B;  3IWB A;  2YTD A;  2UXB E;  2RS6 A;  3BGH A;  1NCS A;  5KL7 A;  1YUJ A;  2EM6 A;  4YY3 E;  2EOQ A;  2EMH A;  3JAM C;  4WFT A;  2EQ0 A;  1TF3 A;  2EPL X;  4BC9 A;  2F4V E;  2G7H A;  5TSE A;  2BBG A;  2EN3 A;  2EMI A;  1F2I G;  4ZYE A;  3C6K A;  1AAY A;  1SR9 A;  4JYA E;  2L3C A;  3BBG A;  3T1Y E;  1A1H A;  3OML A;  4KHP E;  2ELZ A;  1HR0 E;  2VRD A;  4I8O A;  4TUI A;  1JK1 A;  1NEI A;  1FKA E;  1YPN A;  3HPZ A;  2GLI A;  1IQS A;  4DMI A;  2ADR A;  1N34 E;  5A6B A;  2LBS B;  2VE7 C;  2EOY A;  3ECR A;  2YRM A;  2LCE A;  4F9C B;  3MHS C;  3EQ1 A;  2MKD A;  2EPK X;  4WPY A;  2E1M A;  2YTQ A;  4L5N C;  4AQY E;  3RMP A;  5BR8 E;  1G2F C;  2L2N A;  4DV2 E;  3HXL A;  4GEQ B;  5A6K A;  1IBM E;  2ELY A;  2H36 X;  3LLH A;  1EKZ A;  2UU9 E;  5KL3 A;  4BCA A;  4OX9 E;  2K4V A;  2YTJ A;  5A6A A;  2NUF A;  2DGC A;  2UXC E;  5CFF E;  5KL5 A;  3F6G A;  4J8Z A;  5FLX C;  3EPJ A;  1GZ6 A;  1QNT A;  2YWQ A;  2EN8 A;  2EM2 A;  4R2R A;  2EN4 A;  1PJT A;  2IHR 1;  4B3T E;  3JU0 A;  3JTZ A;  4IS1 C;  3J7Y p;  1BBO A;  2NUE A;  2EOR A;  2ZM6 E;  4B3R E;  1UHZ A;  1DQ3 A;  4B3S E;  2L3J A;  1X5W A;  3M99 B;  2E5L E;  2JYA A;  2EPU A;  4DV4 E;  1X49 A;  1HNX E;  1A1J A;  5AE3 A;  4R2E A;  5IT9 C;  2EM8 A;  2LRS A;  2V83 A;  4DV1 E;  1EH7 A;  1A1F A;  4BS9 A;  2EQ1 A;  1ZU1 A;  2JWO A;  2ENA A;  2EMX A;  2LT7 A;  2LUQ A;  1WRJ A;  3VK6 A;  2RPC A;  2EPN A;  2EOX A;  2EL5 A;  3P1X A;  4WSG A;  1T4N A;  3F6H A;  2M9A A;  4LF4 E;  4LFB E;  4WSP A;  2N3G A;  5AC4 A;  1A1G A;  2UUC E;  1PKP A;  2EML A;  2F8B A;  2NUG A;  4DV7 E;  3BID A;  3VYX A;  2NAB A;  2M7Q A;  1BBG A;  2V85 A;  1SFE A;  2EL4 A;  4HEI A;  3J81 C;  4X62 E;  2EMK A;  2EOZ A;  4NZV A;  2B9D A;  1G2D C;  4LF8 E;  4DR1 E;  2EN6 A;  1T38 A;  1GQE A;  1IMU A;  1MGT A;  1KYQ A;  2V88 A;  1UBD C;  4O43 A;  4O5G A;  4MLQ A;  3LML A;  2LUP B;  2DIX A;  1WXR A;  4DR6 E;  1ZBT A;  2YTN A;  1PJQ A;  1X6F A;  2JP9 A;  2EM3 A;  2KOU A;  3QG5 C;  2EM4 A;  1UIL A;  1KJK A;  1LLM C;  3K6Q A;  4RH8 A;  4X64 E;  2YTP A;  1DGC A;  4LF7 E;  2B7V A;  5AAS A;  2LTR A;  2LMZ A;  2JPA A;  5A6J A;  4TUG A;  3AV0 A;  1XNR E;  2EPR A;  3ADJ A;  4DUY E;  2YT4 A;  4F6M A;  4DUZ E;  4LF5 E;  3C6M A;  4JV5 E;  5A69 A;  4R2P A;  4R2A A;  1BB8 A;  3J80 C;  2E72 A;  2ENC A;  2MDR A;  1HNZ E;  2L92 A;  2EN7 A;  2NA2 A;  2RQL A;  5KL6 A;  2CTD A;  2CT1 A;  2YSO A;  4OOG C;  1O0W A;  3ADG A;  1N36 E;  1WJP A;  4JI0 E;  2EMG A;  4JI4 E;  4LTY A;  3IWC A;  1AH5 A;  2D9H A;  1YYO A;  1MEY C;  1EH8 A;  2EPX A;  1YYK A;  4JI2 E;  2VQE E;  2EPA A;  2DMY A;  2V89 A;  2EL6 A;  1RC7 A;  2DB2 A;  4R8O A;  4DR4 E;  1GTK A;  2LJU A;  3VYY A;  1T4L B;  2DRP A;  2I9I A;  5LLQ A;  2EOO A;  3HTX A;  2EP3 A;  4F9B B;  3AUZ A;  3ADI A;  2R76 A;  2FTX B;  2EN2 A;  4BHC A;  4DR7 E;  2YTI A;  1HNW E;  2EPO A;  2EPM X;  2KHX A;  3IWD A;  4R03 A;  2GHF A;  4X65 E;  4R2S A;  4FK5 C;  2RS7 A;  2KON A;  2DSY A;  2EN1 A;  2YRK A;  1TF6 A;  1TN9 A;  3EPK A;  4WX9 A;  2WCC 3;  4JI8 E;  2JVA A;  1ZBQ A;  2M4I A;  1EH6 A;  2EMW A;  2LVH A;  3HQ1 A;  4JI1 E;  2JOX A;  5LMN E;  2EQ3 A;  2HC5 A;  4GKJ E;  4R2D A;  2EOF A;  4KWY A;  2EJ4 A;  4LF6 E;  5AC5 A;  1ZR9 A;  4O4K A;  1IBL E;  2I13 A;  4NXN E;  2HHH E;  4NHR A;  2RSM A;  4JI3 E;  3L00 A;  2JY9 A;  4BC7 A;  2YTE A;  2K7I A;  2MDG A;  2LO3 A;  3THO B;  5KL4 A;  1WHQ A;  1B69 A;  3MHH C;  4DR3 E;  4BMJ A;  1J5E E;  2UUA E;  2EOM A;  3H09 A;  2ODR D;  2Q8U A;  5KL2 A;  4X66 E;  2YRH A;  1X6H A;  4DR5 E;  1PDA A;  2J7J A;  1A1K A;  3T1H E;  1YFH A;  4F2J C;  4JI6 E;  1N33 E;  2FV4 B;  2EOJ A;  2L8T A;  2CPN A;  4WXC A;  2EOE A; 
#chains in the Genus database with same CATH homology
 2BBG A;  3BBG A;  1BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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