The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
59
|
structure length |
58
|
Chain Sequence |
ANENILKLKLYRSLGVILDLENDQVLINRNDGNIDILPLDNNLSDFYKTKYIWERLGK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Cell cycle
|
| molecule keywords |
Kinetochore protein SPC25
|
| publication title |
A structural basis for kinetochore recruitment of the Ndc80 complex via two distinct centromere receptors.
pubmed doi rcsb |
| source organism |
Saccharomyces cerevisiae s288c
|
| total genus |
15
|
| structure length |
58
|
| sequence length |
59
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2012-08-02 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain |
#chains in the Genus database with same CATH superfamily 4GEQ B; 2FV4 B; 2FTX B; 5T6J A; #chains in the Genus database with same CATH topology 1N36 E; 4BC9 A; 3AUZ A; 2JYA A; 2EOH A; 3C6M A; 1EH8 A; 3JU0 A; 4DUY E; 4DR4 E; 1X5W A; 4P7D A; 4F9C B; 2EMK A; 5A2Q C; 4X8W A; 3C4B A; 3ADL A; 1SR9 A; 4O24 A; 4F54 A; 1STU A; 4Q28 A; 2JXP A; 4WX9 A; 2EM0 A; 3QG5 C; 2RTX A; 2LRS A; 3P1X A; 4IS1 C; 2K4V A; 4JI5 E; 2EMY A; 1LLM C; 3H09 A; 2F8B A; 1I94 E; 2MC5 A; 4B3S E; 4DV4 E; 2I13 A; 4WSG A; 2KOU A; 5A6A A; 1YYO A; 3ZOQ B; 3EPL A; 1UBD C; 1YYW A; 4DR7 E; 4ZYG A; 2EPK X; 1X48 A; 2V88 A; 2V86 A; 4DUZ E; 2MKD A; 2EPO A; 1HR0 E; 1PJS A; 4LF6 E; 1GZ6 A; 1JK1 A; 3F6G A; 2UXC E; 3VHT B; 4MLQ A; 3JAM C; 4AQY E; 4DR1 E; 4JI0 E; 2JR1 A; 2EMI A; 4RHB B; 5KL2 A; 1GTK A; 2EPZ A; 4Q35 B; 2DIX A; 3KWR A; 1T4O A; 5ADZ A; 2E5L E; 2EL6 A; 3L00 A; 2PRT A; 2LUQ A; 1N3G A; 4FK5 C; 1UN6 B; 2EM8 A; 2RS7 A; 4L5N C; 2YTN A; 2YTI A; 1HNX E; 2EQ0 A; 2L3C A; 1FKA E; 2YPN A; 2NA2 A; 2ELY A; 3BGH A; 5A6J A; 2WBU A; 2EM2 A; 4R8O A; 4LF4 E; 2L2N A; 2R76 A; 1XMQ E; 3TQM A; 4WXD A; 1X3C A; 1YSA C; 4GKJ E; 2JOB A; 2EMX A; 3ADI A; 1GQE A; 4R2R A; 4M30 A; 2NAB A; 5AE3 A; 4DR3 E; 2JP9 A; 2UUB E; 1ZBT A; 2EOQ A; 3AV0 A; 3VYY A; 2ADR A; 2FGG A; 4O4K A; 4JI4 E; 4JI7 E; 1IBM E; 4F6M A; 2EL5 A; 2VQF E; 1QU6 A; 1YYK A; 2RQL A; 2M7Q A; 4JV5 E; 3K6Q A; 3MHS C; 1T38 A; 4LFA E; 4RH8 A; 4X62 E; 5IV8 B; 2YTE A; 1X6E A; 1T4L B; 2V8Q B; 1HNZ E; 2WZO A; 2EM7 A; 2B9D A; 4DR5 E; 5AE1 A; 4OOG C; 2EMH A; 4X64 E; 3M99 B; 2MKN A; 3BF2 A; 2RPC A; 2EZ6 A; 2EM3 A; 3BID A; 3J81 C; 3LML A; 3RMP A; 2EPL X; 4F9B B; 1B69 A; 2UU9 E; 1IBL E; 1ZU1 A; 4O5G A; 4R2C A; 3J7Y p; 4F6N A; 2DGC A; 2M9A A; 4ZYE A; 2DLQ A; 4B3M E; 4O43 A; 2YSP A; 2HJJ A; 4LFC E; 1JK2 A; 4YY3 E; 2L2M A; 3C4T A; 2EMZ A; 3HPZ A; 1NCS A; 4JI2 E; 4BMJ A; 4LTY A; 2EM9 A; 3HXL A; 4WSP A; 4DV7 E; 2R1F A; 2ODR C; 2IHR 1; 4NHR A; 2EMC A; 2EPC A; 2JVA A; 1DGC A; 2EPU A; 2EN4 A; 3DF6 A; 1UIL A; 4LU9 A; 2LJU A; 4I8O A; 1N33 E; 5A6K A; 2N8X A; 4R2E A; 2EOJ A; 2VF1 A; 2GLI A; 3KZY A; 1WHN A; 1G2F C; 2YTP A; 4ZYH A; 2L92 A; 2UXD E; 1YPN A; 2EL4 A; 1A1K A; 2MDG A; 3HPS A; 1XMO E; 3ADJ A; 2RS6 A; 2RSM A; 2EPR A; 3IWD A; 4R03 A; 2H36 X; 1KJK A; 1IQO A; 2EPM X; 4DV3 E; 1FJG E; 1WHQ A; 4P78 A; 1J26 A; 2YTJ A; 1SFE A; 3J80 C; 5KL4 A; 2ENH A; 2YSO A; 3HTX A; 2YU5 A; 2EOY A; 2LTR A; 2YTD A; 1IQS A; 2LVH A; 2EOI A; 4DV1 E; 1IMU A; 2EOE A; 3J7A G; 2JPA A; 1YFH A; 4B3T E; 2LBS B; 2B3T B; 2YTQ A; 5KL6 A; 5IT9 C; 2I9I A; 1XNQ E; 1BBO A; 4NZV A; 1TN9 A; 4DV6 E; 2CPN A; 2K7I A; 4HTG A; 5TSE A; 4HEI A; 4BHB A; 2ZM6 E; 1RQ0 A; 2LT7 A; 4J8Z A; 2YWQ A; 1X6F A; 4R2A A; 1EH7 A; 1A1G A; 4DV5 E; 2YRM A; 5A69 A; 3IWB A; 2MC6 A; 2UUC E; 2CSH A; 2EM6 A; 2V85 A; 2NUE A; 1BBG A; 2EOS A; 4LFB E; 2YRH A; 4KZS A; 4DR2 E; 2EJ4 A; 4JI8 E; 4K0K E; 4YHH E; 2ENC A; 2KON A; 2EN1 A; 4DKK A; 1UHZ A; 3OTO E; 1A1I A; 1XNR E; 4DV0 E; 4JYA E; 2V83 A; 2LCE A; 2L3J A; 4GEQ B; 2ENA A; 2EOO A; 1WRJ A; 2N3G A; 3THN A; 4X66 E; 1AAY A; 2EOR A; 4WFT A; 2MDR A; 2UUA E; 4M9V C; 2EMG A; 3T1Y E; 4WPY A; 2DLK A; 1ZAA C; 1A1H A; 2B7V A; 2A25 A; 4BS9 A; 2EOF A; 2EPX A; 5A6B A; 1A1J A; 5KL3 A; 2BBG A; 2EQ3 A; 4F9A B; 4R2Q A; 2EM5 A; 2G7H A; 1DQ3 A; 4TUG A; 4R2D A; 3KZZ A; 5T6J A; 2Q8U A; 2LO3 A; 1EH6 A; 2LTS A; 1X49 A; 1YUI A; 4BCA A; 2E1M A; 4M0V A; 4LF8 E; 4LF7 E; 3LLH A; 3F6H A; 1WXR A; 1A1L A; 2EM4 A; 5KL5 A; 1Z1B A; 1QNT A; 5IWA E; 4IJD A; 2ELZ A; 2EP3 A; 1HNW E; 5KL7 A; 1F2I G; 3DJW A; 1J5E E; 1ZR9 A; 2LJH A; 1O0W A; 2LUP B; 2LV2 A; 4DV2 E; 3EPK A; 1YUJ A; 2L2K B; 4X65 E; 3EPH A; 2F4V E; 4R2P A; 2V89 A; 2HHH E; 2L33 A; 1T39 A; 1PJT A; 4TUI A; 3MSW A; 4WXC A; 2EPN A; 4DMI A; 5CFF E; 2HGH A; 1NEI A; 1TF6 A; 1N32 E; 2EOZ A; 2J7J A; 2CT1 A; 4R2S A; 5LLQ A; 1KYQ A; 2DRP A; 4DR6 E; 2B7T A; 2YRK A; 5LMU E; 4MLV A; 4JI1 E; 2YTG A; 4OX9 E; 4GZN C; 4NXM E; 4BBY A; 2DSY A; 4N4R B; 2FTX B; 4JI3 E; 1X6H A; 2YT4 A; 4F2J C; 4JI6 E; 2EN8 A; 2YZT A; 1PJQ A; 3EPJ A; 3IWC A; 2M1S A; 2LMZ A; 2YU8 A; 1EKZ A; 2EWL A; 2YTF A; 4LF9 E; 2WCC 3; 5AAS A; 5LMN E; 2EMW A; 1IBK E; 2WBT A; 4KWY A; 4LF5 E; 3JTZ A; 1A1F A; 3T1H E; 2D9H A; 4M2Z A; 2ODR D; 5FLX C; 2UXB E; 1BB8 A; 2EOM A; 2V87 A; 2EPA A; 2EN7 A; 2L8T A; 2DMI A; 2KHX A; 1YZ9 A; 1DI2 A; 2EML A; 5F3W A; 3THO B; 3UK3 C; 2EOX A; 5AC4 A; 2EMF A; 4L8N A; 2YTO A; 2RSI A; 2GPI A; 3VK6 A; 1RC7 A; 2DB2 A; 4NXN E; 1AH5 A; 1T4N A; 4WYQ B; 1RMD A; 4X9J A; 2BB8 A; 2NUF A; 3MHH C; 1L4S A; 1PDA A; 2HC5 A; 4BHC A; 2WBS A; 2EN2 A; 2LE2 A; 1G2D C; 2N3H A; 3EQ1 A; 3OML A; 5A6B D; 2EMB A; 3C6K A; 2EE8 A; 5BR8 E; 2L6M A; 2VRD A; 4ZYD A; 2VQE E; 2EN6 A; 2DMY A; 1N34 E; 5AE2 A; 2JWO A; 2JOX A; 3HQ1 A; 2M4I A; 2JY9 A; 2VE7 C; 5AC5 A; 1ZBQ A; 3ADG A; 5DNY A; 2EQ1 A; 3BBG A; 2NUG A; 5IXM B; 1X47 A; 2GHF A; 3FIG A; 2FV4 B; 1TF3 A; 4KHP E; 3VYX A; 3ECR A; 1WJP A; 1PKP A; 2EPP A; 4GKK E; 2CTD A; 2E72 A; 4BC7 A; 1P47 A; 4B3R E; 5LL6 R; 1MGT A; 2EMA A; 1MEY C; 2EN3 A; #chains in the Genus database with same CATH homology 2WZO A; 1N36 E; 2FTX B; 4DV5 E; 4JI3 E; 2B9D A; 4BC9 A; 2YT4 A; 4DR5 E; 4JI6 E; 3AUZ A; 2YZT A; 5AE1 A; 4OOG C; 3IWC A; 4X64 E; 2M1S A; 3JU0 A; 4DUY E; 2LMZ A; 3IWB A; 4DR4 E; 1EKZ A; 2EZ6 A; 4P7D A; 2EWL A; 2MC6 A; 4LF9 E; 4F9C B; 5AAS A; 5LMN E; 2UUC E; 3J81 C; 3LML A; 3RMP A; 4F9B B; 5A2Q C; 2UU9 E; 1IBL E; 2V85 A; 4X8W A; 1IBK E; 3C4B A; 2NUE A; 1SR9 A; 3ADL A; 4F54 A; 3J7Y p; 4LF5 E; 4LFB E; 1STU A; 3JTZ A; 4Q28 A; 4B3M E; 4KZS A; 4DR2 E; 2RTX A; 2LRS A; 4JI8 E; 3P1X A; 4YHH E; 2K4V A; 4YY3 E; 3T1H E; 2L2M A; 4JI5 E; 4M2Z A; 4LFC E; 2KON A; 2ODR D; 3H09 A; 4DKK A; 1UHZ A; 3OTO E; 2F8B A; 1XNR E; 3C4T A; 5FLX C; 4DV0 E; 2V83 A; 3HPZ A; 2L3J A; 4JYA E; 4GEQ B; 1I94 E; 2UXB E; 2N3G A; 2MC5 A; 4B3S E; 4X66 E; 4DV4 E; 4JI2 E; 4BMJ A; 4LTY A; 2KOU A; 3HXL A; 1YYO A; 4WSP A; 3ZOQ B; 4DV7 E; 4WFT A; 1YYW A; 4DR7 E; 2MDR A; 2V87 A; 2UUA E; 1X48 A; 2ODR C; 2V88 A; 3T1Y E; 2IHR 1; 2L8T A; 2V86 A; 4WPY A; 4DUZ E; 2B7V A; 2JVA A; 2KHX A; 1YZ9 A; 1DI2 A; 4BS9 A; 3DF6 A; 5F3W A; 1HR0 E; 4F9A B; 1UIL A; 4LU9 A; 4LF6 E; 1GZ6 A; 2G7H A; 4I8O A; 1N33 E; 1DQ3 A; 3F6G A; 4TUG A; 2UXC E; 5T6J A; 3JAM C; 4AQY E; 4L8N A; 4DR1 E; 2LTS A; 2JR1 A; 4JI0 E; 1X49 A; 3VK6 A; 2VF1 A; 4BCA A; 2E1M A; 1WHN A; 4M0V A; 4LF8 E; 4LF7 E; 3LLH A; 2DIX A; 2L92 A; 1T4O A; 3KWR A; 3F6H A; 5ADZ A; 2E5L E; 4K0K E; 2UXD E; 1WXR A; 2LUQ A; 1RC7 A; 3HPS A; 1XMO E; 2DB2 A; 3ADJ A; 5IWA E; 4NXN E; 2RS6 A; 2RS7 A; 4L5N C; 2RSM A; 1T4N A; 1HNX E; 4WYQ B; 3IWD A; 1HNW E; 4R03 A; 2H36 X; 2NUF A; 3DJW A; 2L3C A; 1J5E E; 1FKA E; 2LJH A; 2LE2 A; 1O0W A; 4DV3 E; 2N3H A; 2LUP B; 2NA2 A; 1FJG E; 1WHQ A; 3OML A; 4R8O A; 4P78 A; 4DV2 E; 4LF4 E; 2L2N A; 1J26 A; 2L2K B; 3J80 C; 1XMQ E; 5BR8 E; 2L6M A; 4X65 E; 2VQE E; 2F4V E; 4GKJ E; 3HTX A; 2V89 A; 2DMY A; 2JOB A; 2LTR A; 1N34 E; 5AE2 A; 3ADI A; 1GQE A; 2JWO A; 2HHH E; 2JOX A; 3HQ1 A; 2M4I A; 2JY9 A; 2L33 A; 2VE7 C; 4M30 A; 1ZBQ A; 4DV1 E; 3ADG A; 5DNY A; 4TUI A; 3MSW A; 2NUG A; 5AE3 A; 4DR3 E; 3J7A G; 1X47 A; 4DMI A; 3FIG A; 1ZBT A; 2FV4 B; 5CFF E; 2UUB E; 3VYX A; 4KHP E; 4B3T E; 3AV0 A; 3VYY A; 1PKP A; 1N32 E; 2FGG A; 2B3T B; 2LBS B; 4JI4 E; 5IT9 C; 4JI7 E; 1IBM E; 1XNQ E; 4GKK E; 2VQF E; 1QU6 A; 4DV6 E; 1YYK A; 4DR6 E; 2CPN A; 2M7Q A; 4BC7 A; 4JV5 E; 3K6Q A; 2ZM6 E; 2B7T A; 1RQ0 A; 5LMU E; 4J8Z A; 4JI1 E; 1HNZ E; 4LFA E; 4B3R E; 4OX9 E; 5LL6 R; 4X62 E; 1T4L B; 2V8Q B; 4NXM E; 4BBY A; 2DSY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
