2RQLA

Solution structure of the e. coli ribosome hibernation promoting factor hpf
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
95
structure length
95
Chain Sequence
MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Translation
molecule keywords Probable sigma-54 modulation protein
publication title Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2009-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 2rqlA00
1IMUA 1L4SA 2YWQA 3TQMA 1N3GA 2RQLA 4HEIA
chains in the Genus database with same CATH superfamily
2EM7A 1Z1BA 4F54A 2L2NA 4O4KA 2EN4A 1T4OA 3T1HE 5AASA 1YYKA 5AC5A 3EQ1A 5A2QC 2UUCE 1QU6A 4F2JC 5AE3A 2EORA 2VE7C 1WXRA 2EOMA 1X6FA 3RMPA 4L8NA 4GEQB 4F9BB 2K4VA 3T1YE 4KHPE 3LMLA 1MEYC 2J7JA 2YPNA 1XMOE 1G2FC 2GLIA 3OMLA 4R2AA 5A6KA 1A1JA 3EPJA 1J26A 2EM3A 5LL6R 2CPNA 2DIXA 3VHTB 4GZNC 2I13A 2ENAA 4LTYA 1T4NA 2LO3A 3ADGA 1HNWE 2EM0A 4WXCA 4R8OA 5FLXC 2JOXA 2EN1A 4JI0E 5TSEA 2R1FA 4B3ME 2MDRA 2MKDA 2WCC3 2LCEA 4JI4E 3EPHA 2KOUA 4WYQB 4DUYE 2EMCA 4X65E 1A1HA 1HNZE 2EOQA 2JYAA 4N4RB 1WRJA 1ZU1A 1UHZA 2EPMX 5KL2A 4LF8E 1RC7A 4BHBA 4Q28A 5A69A 1XNQE 2KONA 1I94E 3H09A 2NUFA 2LV2A 5ADZA 2UXCE 4B3SE 4DV7E 2VQFE 3QG5C 2EMWA 4F9AB 4NXNE 2DB2A 2V83A 2EOHA 2B9DA 2EQ0A 2NABA 2G7HA 4NHRA 3JU0A 4NXME 1EH6A 2DMYA 2EM8A 4R2RA 2EN2A 2EPKX 1B69A 2EN8A 4BMJA 2A25A 2EPUA 4F6MA 1ZBTA 1X5WA 5KL3A 1IBLE 2EPRA 2JXPA 3BBGA 2VQEE 2YTGA 2EOSA 1AAYA 1PJSA 3KZZA 1ZR9A 4WSGA 3HPSA 2CT1A 1A1FA 3C4BA 1YZ9A 3KZYA 2V8QB 4F6NA 1A1LA 1TF3A 2EJ4A 4JI5E 2L6MA 3AV0A 1EKZA 4GKJE 2RQLA 3UK3C 3HPZA 1JK1A 2EPXA 2DMIA 1A1GA 2IHR1 2EMLA 2YRKA 2UXDE 3MHHC 4BCAA 1GQEA 3IWBA 1WHNA 1T38A 2LJHA 4DR1E 2EN3A 1EH8A 2YT4A 2ENHA 2JWOA 2RPCA 2L8TA 3J80C 1O0WA 2YTJA 1TN9A 2LTSA 5AC4A 2WBUA 5IT9C 4P78A 4DR5E 4JI2E 2B7TA 1IBME 1FKAE 4BHCA 4KZSA 4DR3E 2MC5A 3L00A 5AE1A 2L2KB 3VK6A 1IMUA 4JI8E 4DMIA 4YHHE 1BBOA 3P1XA 4LF9E 4WFTA 4DV3E 2LJUA 1PDAA 4X64E 1J5EE 2M4IA 5KL5A 2Q8UA 4ZYEA 1X3CA 2D9HA 5IWAE 4F9CB 2YTPA 2M1SA 4R2QA 2HGHA 2RSIA 2EMKA 2N3GA 2N8XA 2KHXA 2EPLX 4DV2E 2MDGA 1NEIA 2V86A 2EPPA 2E1MA 4R2EA 1N34E 2EOIA 2YTNA 2FV4B 2YTDA 3C4TA 1GZ6A 2EMGA 4TUGA 2YTIA 4DR4E 4OX9E 2DSYA 3IWCA 2L2MA 1SFEA 5IXMB 2JPAA 1SR9A 4BS9A 2DLQA 1QNTA 4I8OA 2LUPB 2YTQA 2WBSA 2YTOA 2E5LE 4X8WA 3ADJA 1X6HA 2JY9A 2YTFA 4JI3E 4ZYGA 3C6MA 2WZOA 2K7IA 4LF7E 2BB8A 2CSHA 2EN7A 4IS1C 4R2CA 2WBTA 3BF2A 2YZTA 4YY3E 2EPZA 4B3RE 2L3CA 2RS7A 2YSPA 4R2DA 4R2SA 4IJDA 2EOEA 4Q35B 2JVAA 5A6BD 3DF6A 4AQYE 1L4SA 2UUAE 2EM9A 2EN6A 1YSAC 3TQMA 2NUEA 3VYXA 2YU5A 3MSWA 1EH7A 2EOFA 4RHBB 1X6EA 1X49A 2LRSA 2DGCA 2BBGA 4GKKE 4K0KE 3THNA 1ZBQA 2HC5A 4JYAE 1G2DC 2EM2A 2ELZA 2HJJA 3BIDA 2NA2A 4B3TE 4LF5E 3JTZA 2EZ6A 2EQ3A 1IQOA 2EOYA 4NZVA 4JV5E 3ZOQB 1PJTA 1IBKE 1UN6B 1XMQE 4DR2E 3LLHA 4JI7E 1RQ0A 2EOZA 4DV4E 2EPOA 4JI1E 2EMIA 4L5NC 2EMYA 4O43A 2EMAA 2EMFA 3VYYA 3OTOE 3HXLA 4MLQA 2M7QA 4LFBE 2F8BA 1IQSA 4DR7E 2YU8A 5A6JA 2EL6A 4J8ZA 2GPIA 4ZYDA 2I9IA 2N3HA 4X62E 2LUQA 2LE2A 4R03A 3J7AG 4KWYA 2EL4A 4DV1E 1YYOA 2EPCA 2GHFA 1T4LB 1WJPA 2EP3A 2YSOA 1PJQA 4WXDA 4JI6E 4BC9A 3J81C 1ZAAC 1P47A 4X9JA 1WHQA 2YWQA 2R76A 1GTKA 2E72A 3KWRA 4DV5E 1FJGE 1T39A 2DLKA 2LVHA 4BBYA 2F4VE 2EPNA 2L33A 3J7Yp 3C6KA 2PRTA 1LLMC 1N3GA 1YUIA 3HTXA 2NUGA 1RMDA 1N33E 4RH8A 2LT7A 4O5GA 1BBGA 4WSPA 4M0VA 2EOXA 5LMUE 3ADLA 2EE8A 2RSMA 5T6JA 1A1KA 4LFCE 2ELYA 2B3TB 2B7VA 2VRDA 1KYQA 1DGCA 1HNXE 3HQ1A 2ZM6E 2UUBE 1STUA 2LTRA 2M9AA 5KL7A 3AUZA 1DI2A 1AH5A 2JP9A 1UBDC 5A6AA 2JOBA 4WPYA 5F3WA 1UILA 3F6HA 2CTDA 4LF4E 2LBSB 1X47A 2EOJA 4MLVA 3IWDA 2DRPA 4P7DA 1N36E 1X48A 1YUJA 3EPLA 2YRMA 4ZYHA 2LMZA 3F6GA 2EQ1A 1YFHA 4M9VC 1YPNA 4WX9A 2MC6A 2EMHA 2YTEA 1KJKA 2MKNA 2ODRC 4OOGC 5A6BA 1NCSA 1DQ3A 3JAMC 5LMNE 4O24A 2V87A 3K6QA 4HTGA 4M30A 2EM4A 3EPKA 2VF1A 2EMBA 3ECRA 2EM6A 1XNRE 2RS6A 2L3JA 2ENCA 4DUZE 3MHSC 2HHHE 2EWLA 4LFAE 2V85A 2ODRD 4HEIA 1TF6A 4DKKA 1PKPA 4BC7A 1N32E 4DV6E 2ADRA 2EMZA 3M99B 2V89A 4M2ZA 2EPAA 5LLQA 3THOB 4R2PA 5BR8E 2EOOA 2YRHA 5AE2A 1JK2A 4FK5C 4LF6E 2L92A 1HR0E 4LU9A 5KL4A 1A1IA 5DNYA 5IV8B 4DV0E 3ADIA 1F2IG 2FTXB 2UU9E 2EL5A 5CFFE 1BB8A 2EMXA 5KL6A 4TUIA 2FGGA 2H36X 2EM5A 2V88A 4DR6E 2JR1A 3DJWA 3FIGA 3BGHA 2RTXA 1MGTA 1YYWA 4X66E 2UXBE
chains in the Genus database with same CATH topology
1IMUA 1L4SA 2YWQA 3TQMA 1N3GA 2RQLA 4HEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMU A;  1L4S A;  2YWQ A;  3TQM A;  1N3G A;  2RQL A;  4HEI A; 
#chains in the Genus database with same CATH topology
 2EM7 A;  1Z1B A;  4F54 A;  2L2N A;  4O4K A;  2EN4 A;  1T4O A;  3T1H E;  5AAS A;  1YYK A;  5AC5 A;  3EQ1 A;  5A2Q C;  2UUC E;  1QU6 A;  4F2J C;  5AE3 A;  2EOR A;  2VE7 C;  1WXR A;  2EOM A;  1X6F A;  3RMP A;  4L8N A;  4GEQ B;  4F9B B;  2K4V A;  3T1Y E;  4KHP E;  3LML A;  1MEY C;  2J7J A;  2YPN A;  1XMO E;  1G2F C;  2GLI A;  3OML A;  4R2A A;  5A6K A;  1A1J A;  3EPJ A;  1J26 A;  2EM3 A;  5LL6 R;  2CPN A;  2DIX A;  3VHT B;  4GZN C;  2I13 A;  2ENA A;  4LTY A;  1T4N A;  2LO3 A;  3ADG A;  1HNW E;  2EM0 A;  4WXC A;  4R8O A;  5FLX C;  2JOX A;  2EN1 A;  4JI0 E;  5TSE A;  2R1F A;  4B3M E;  2MDR A;  2MKD A;  2WCC 3;  2LCE A;  4JI4 E;  3EPH A;  2KOU A;  4WYQ B;  4DUY E;  2EMC A;  4X65 E;  1A1H A;  1HNZ E;  2EOQ A;  2JYA A;  4N4R B;  1WRJ A;  1ZU1 A;  1UHZ A;  2EPM X;  5KL2 A;  4LF8 E;  1RC7 A;  4BHB A;  4Q28 A;  5A69 A;  1XNQ E;  2KON A;  1I94 E;  3H09 A;  2NUF A;  2LV2 A;  5ADZ A;  2UXC E;  4B3S E;  4DV7 E;  2VQF E;  3QG5 C;  2EMW A;  4F9A B;  4NXN E;  2DB2 A;  2V83 A;  2EOH A;  2B9D A;  2EQ0 A;  2NAB A;  2G7H A;  4NHR A;  3JU0 A;  4NXM E;  1EH6 A;  2DMY A;  2EM8 A;  4R2R A;  2EN2 A;  2EPK X;  1B69 A;  2EN8 A;  4BMJ A;  2A25 A;  2EPU A;  4F6M A;  1ZBT A;  1X5W A;  5KL3 A;  1IBL E;  2EPR A;  2JXP A;  3BBG A;  2VQE E;  2YTG A;  2EOS A;  1AAY A;  1PJS A;  3KZZ A;  1ZR9 A;  4WSG A;  3HPS A;  2CT1 A;  1A1F A;  3C4B A;  1YZ9 A;  3KZY A;  2V8Q B;  4F6N A;  1A1L A;  1TF3 A;  2EJ4 A;  4JI5 E;  2L6M A;  3AV0 A;  1EKZ A;  4GKJ E;  2RQL A;  3UK3 C;  3HPZ A;  1JK1 A;  2EPX A;  2DMI A;  1A1G A;  2IHR 1;  2EML A;  2YRK A;  2UXD E;  3MHH C;  4BCA A;  1GQE A;  3IWB A;  1WHN A;  1T38 A;  2LJH A;  4DR1 E;  2EN3 A;  1EH8 A;  2YT4 A;  2ENH A;  2JWO A;  2RPC A;  2L8T A;  3J80 C;  1O0W A;  2YTJ A;  1TN9 A;  2LTS A;  5AC4 A;  2WBU A;  5IT9 C;  4P78 A;  4DR5 E;  4JI2 E;  2B7T A;  1IBM E;  1FKA E;  4BHC A;  4KZS A;  4DR3 E;  2MC5 A;  3L00 A;  5AE1 A;  2L2K B;  3VK6 A;  1IMU A;  4JI8 E;  4DMI A;  4YHH E;  1BBO A;  3P1X A;  4LF9 E;  4WFT A;  4DV3 E;  2LJU A;  1PDA A;  4X64 E;  1J5E E;  2M4I A;  5KL5 A;  2Q8U A;  4ZYE A;  1X3C A;  2D9H A;  5IWA E;  4F9C B;  2YTP A;  2M1S A;  4R2Q A;  2HGH A;  2RSI A;  2EMK A;  2N3G A;  2N8X A;  2KHX A;  2EPL X;  4DV2 E;  2MDG A;  1NEI A;  2V86 A;  2EPP A;  2E1M A;  4R2E A;  1N34 E;  2EOI A;  2YTN A;  2FV4 B;  2YTD A;  3C4T A;  1GZ6 A;  2EMG A;  4TUG A;  2YTI A;  4DR4 E;  4OX9 E;  2DSY A;  3IWC A;  2L2M A;  1SFE A;  5IXM B;  2JPA A;  1SR9 A;  4BS9 A;  2DLQ A;  1QNT A;  4I8O A;  2LUP B;  2YTQ A;  2WBS A;  2YTO A;  2E5L E;  4X8W A;  3ADJ A;  1X6H A;  2JY9 A;  2YTF A;  4JI3 E;  4ZYG A;  3C6M A;  2WZO A;  2K7I A;  4LF7 E;  2BB8 A;  2CSH A;  2EN7 A;  4IS1 C;  4R2C A;  2WBT A;  3BF2 A;  2YZT A;  4YY3 E;  2EPZ A;  4B3R E;  2L3C A;  2RS7 A;  2YSP A;  4R2D A;  4R2S A;  4IJD A;  2EOE A;  4Q35 B;  2JVA A;  5A6B D;  3DF6 A;  4AQY E;  1L4S A;  2UUA E;  2EM9 A;  2EN6 A;  1YSA C;  3TQM A;  2NUE A;  3VYX A;  2YU5 A;  3MSW A;  1EH7 A;  2EOF A;  4RHB B;  1X6E A;  1X49 A;  2LRS A;  2DGC A;  2BBG A;  4GKK E;  4K0K E;  3THN A;  1ZBQ A;  2HC5 A;  4JYA E;  1G2D C;  2EM2 A;  2ELZ A;  2HJJ A;  3BID A;  2NA2 A;  4B3T E;  4LF5 E;  3JTZ A;  2EZ6 A;  2EQ3 A;  1IQO A;  2EOY A;  4NZV A;  4JV5 E;  3ZOQ B;  1PJT A;  1IBK E;  1UN6 B;  1XMQ E;  4DR2 E;  3LLH A;  4JI7 E;  1RQ0 A;  2EOZ A;  4DV4 E;  2EPO A;  4JI1 E;  2EMI A;  4L5N C;  2EMY A;  4O43 A;  2EMA A;  2EMF A;  3VYY A;  3OTO E;  3HXL A;  4MLQ A;  2M7Q A;  4LFB E;  2F8B A;  1IQS A;  4DR7 E;  2YU8 A;  5A6J A;  2EL6 A;  4J8Z A;  2GPI A;  4ZYD A;  2I9I A;  2N3H A;  4X62 E;  2LUQ A;  2LE2 A;  4R03 A;  3J7A G;  4KWY A;  2EL4 A;  4DV1 E;  1YYO A;  2EPC A;  2GHF A;  1T4L B;  1WJP A;  2EP3 A;  2YSO A;  1PJQ A;  4WXD A;  4JI6 E;  4BC9 A;  3J81 C;  1ZAA C;  1P47 A;  4X9J A;  1WHQ A;  2YWQ A;  2R76 A;  1GTK A;  2E72 A;  3KWR A;  4DV5 E;  1FJG E;  1T39 A;  2DLK A;  2LVH A;  4BBY A;  2F4V E;  2EPN A;  2L33 A;  3J7Y p;  3C6K A;  2PRT A;  1LLM C;  1N3G A;  1YUI A;  3HTX A;  2NUG A;  1RMD A;  1N33 E;  4RH8 A;  2LT7 A;  4O5G A;  1BBG A;  4WSP A;  4M0V A;  2EOX A;  5LMU E;  3ADL A;  2EE8 A;  2RSM A;  5T6J A;  1A1K A;  4LFC E;  2ELY A;  2B3T B;  2B7V A;  2VRD A;  1KYQ A;  1DGC A;  1HNX E;  3HQ1 A;  2ZM6 E;  2UUB E;  1STU A;  2LTR A;  2M9A A;  5KL7 A;  3AUZ A;  1DI2 A;  1AH5 A;  2JP9 A;  1UBD C;  5A6A A;  2JOB A;  4WPY A;  5F3W A;  1UIL A;  3F6H A;  2CTD A;  4LF4 E;  2LBS B;  1X47 A;  2EOJ A;  4MLV A;  3IWD A;  2DRP A;  4P7D A;  1N36 E;  1X48 A;  1YUJ A;  3EPL A;  2YRM A;  4ZYH A;  2LMZ A;  3F6G A;  2EQ1 A;  1YFH A;  4M9V C;  1YPN A;  4WX9 A;  2MC6 A;  2EMH A;  2YTE A;  1KJK A;  2MKN A;  2ODR C;  4OOG C;  5A6B A;  1NCS A;  1DQ3 A;  3JAM C;  5LMN E;  4O24 A;  2V87 A;  3K6Q A;  4HTG A;  4M30 A;  2EM4 A;  3EPK A;  2VF1 A;  2EMB A;  3ECR A;  2EM6 A;  1XNR E;  2RS6 A;  2L3J A;  2ENC A;  4DUZ E;  3MHS C;  2HHH E;  2EWL A;  4LFA E;  2V85 A;  2ODR D;  4HEI A;  1TF6 A;  4DKK A;  1PKP A;  4BC7 A;  1N32 E;  4DV6 E;  2ADR A;  2EMZ A;  3M99 B;  2V89 A;  4M2Z A;  2EPA A;  5LLQ A;  3THO B;  4R2P A;  5BR8 E;  2EOO A;  2YRH A;  5AE2 A;  1JK2 A;  4FK5 C;  4LF6 E;  2L92 A;  1HR0 E;  4LU9 A;  5KL4 A;  1A1I A;  5DNY A;  5IV8 B;  4DV0 E;  3ADI A;  1F2I G;  2FTX B;  2UU9 E;  2EL5 A;  5CFF E;  1BB8 A;  2EMX A;  5KL6 A;  4TUI A;  2FGG A;  2H36 X;  2EM5 A;  2V88 A;  4DR6 E;  2JR1 A;  3DJW A;  3FIG A;  3BGH A;  2RTX A;  1MGT A;  1YYW A;  4X66 E;  2UXB E; 
#chains in the Genus database with same CATH homology
 1IMU A;  1L4S A;  2YWQ A;  3TQM A;  1N3G A;  2RQL A;  4HEI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...