2RQLA

Solution structure of the e. coli ribosome hibernation promoting factor hpf
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
95
structure length
95
Chain Sequence
b'MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function.
pubmed doi rcsb
molecule keywords Probable sigma-54 modulation protein
source organism Escherichia coli
molecule tags Translation
total genus 21
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2009-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 2rqlA00
4HEIA 1IMUA 1N3GA 1L4SA 3TQMA 2YWQA 2RQLA
chains in the Genus database with same CATH superfamily
2EMZA 2L3JA 2LT7A 3JU0A 1GZ6A 2RSIA 3F6GA 4O4KA 2UXDE 2E1MA 4JI7E 3AUZA 1T4LB 5LLQA 1SR9A 4JI8E 1YYOA 1PJTA 4R2AA 1T39A 5ADZA 3MHSC 2EM5A 4M2ZA 1HNZE 2RSMA 2EMYA 3C6MA 1UILA 3ZOQB 4P7DA 3IWDA 4BHBA 1KYQA 5AE2A 4J8ZA 3M99B 2JR1A 2JVAA 1EH6A 2YRKA 4NHRA 4DV1E 2EQ0A 4BBYA 1N34E 2GLIA 2YTDA 2I13A 1N36E 2EQ3A 5AE3A 2EL6A 2L2KB 4JI2E 1X6FA 2EMIA 1LLMC 2EPNA 3J7Yp 1UBDC 2B7VA 4X8WA 4DV2E 3HQ1A 3L00A 2CTDA 4LF4E 1AH5A 2EMKA 2ZM6E 2LTSA 3AV0A 4WX9A 1QNTA 2EL5A 2YU5A 3ADGA 2HGHA 3HPZA 4DR7E 2KOUA 2V86A 4R2DA 1BBGA 1ZBTA 4NXME 2LJUA 4DKKA 1PDAA 2EN7A 4LU9A 1N3GA 1X49A 2NUEA 2HHHE 2YTFA 5A6BD 4RH8A 1STUA 2EOMA 4B3SE 3DF6A 1IBLE 1HNXE 2JXPA 2L92A 1J26A 4JI1E 5BR8E 2RTXA 4JYAE 2R1FA 3EPHA 2YTEA 2LRSA 4DR5E 3H09A 2EN8A 3BBGA 4M0VA 1X6EA 2CPNA 1A1IA 4X62E 2ODRD 1J5EE 3JAMC 2EPPA 1I94E 2L33A 2EPCA 4WPYA 4AQYE 1L4SA 4JI6E 3J80C 2EOYA 2DIXA 2EOQA 1GTKA 2YTIA 4DR4E 4BC9A 2PRTA 1MEYC 3HXLA 2ENAA 2YRHA 3J7AG 5KL2A 2VE7C 1UHZA 3UK3C 3BF2A 2B3TB 1A1JA 2L2MA 4GKJE 3LLHA 1T4NA 5A6JA 4R2RA 4O5GA 4JI5E 1TF6A 3QG5C 2EMXA 2EM6A 4F9AB 2EM4A 2EMLA 2EPKX 1WHNA 2EPRA 5IV8B 2EM2A 4ZYDA 1MGTA 1X6HA 2UXCE 4NXNE 1ZR9A 2EP3A 5IXMB 2EN1A 4R03A 4DV7E 5A69A 1DI2A 4DV0E 4I8OA 4MLVA 2EOFA 4R2SA 1DGCA 4X64E 5TSEA 4DR2E 3KWRA 3EPJA 2ADRA 2YZTA 2DB2A 2EPUA 3F6HA 2JOBA 2DSYA 2DLKA 2NA2A 3MHHC 1X48A 1N33E 2WBTA 2RS7A 1HR0E 1YUJA 2L8TA 5KL4A 1B69A 5T6JA 2EN4A 2K4VA 1WRJA 1RC7A 4HTGA 1YYWA 4DV4E 4MLQA 3LMLA 1HNWE 4IJDA 1RQ0A 2B9DA 1X5WA 4BCAA 2EPZA 4DR6E 2L6MA 2E72A 5AC4A 4JV5E 4KWYA 1UN6B 2R76A 4Q35B 3C6KA 1FJGE 4R8OA 2EMAA 5FLXC 1DQ3A 5AASA 2EPMX 4DR3E 2MKNA 4DR1E 4L5NC 4WXDA 3T1YE 2EQ1A 2EMWA 3RMPA 2L2NA 1T38A 3EPKA 2WBSA 3BIDA 2LVHA 5DNYA 4YHHE 4X65E 3ADLA 4R2PA 3THNA 4WFTA 2EMCA 2UUAE 1A1LA 4DMIA 2LJHA 2ENHA 2IHR1 2YTQA 2BB8A 4BMJA 3MSWA 1YSAC 1X47A 3JTZA 4WSPA 2FGGA 2EOSA 4F2JC 4F9BB 2K7IA 1NCSA 2NUGA 1PJQA 2JPAA 2YTGA 2DLQA 1N32E 2D9HA 3K6QA 3HTXA 2UU9E 4R2QA 5A6KA 4DUZE 4F9CB 2WBUA 2RQLA 2EMGA 2EOHA 4ZYHA 4O43A 3DJWA 4R2EA 2YPNA 1G2FC 2YSOA 2EWLA 1YUIA 3FIGA 2VQFE 1TN9A 1P47A 2ELZA 3VYXA 3BGHA 1IBME 2EM7A 2LBSB 2V89A 2DMIA 1IQSA 4TUIA 2B7TA 2V87A 1A1FA 2EM8A 2M9AA 5IWAE 3T1HE 2F4VE 1BBOA 5IT9C 1WJPA 2BBGA 2EOXA 2EOIA 2UXBE 2EOOA 2EOZA 2RPCA 2MC5A 2V8QB 4FK5C 5KL7A 1JK2A 1A1HA 4X9JA 5LL6R 2JOXA 2M4IA 2YTNA 2FTXB 3OMLA 4B3ME 3C4BA 1XNRE 4GEQB 4BC7A 2YWQA 3ADJA 2N8XA 2EJ4A 1GQEA 2V88A 4TUGA 1G2DC 4OX9E 2EZ6A 2E5LE 4Q28A 4DV5E 4ZYGA 1RMDA 4M9VC 1XMOE 2CT1A 4M30A 3KZZA 3THOB 2EN2A 2EE8A 3ADIA 4LF9E 2N3HA 2MC6A 3IWCA 3VHTB 2DMYA 4LTYA 2WZOA 4F6MA 1ZBQA 4LFCE 2ENCA 2YTJA 3EQ1A 5AE1A 4LF8E 4K0KE 2EOJA 1EH8A 4HEIA 2JWOA 1IMUA 2EPOA 1EH7A 4RHBB 2Q8UA 1A1GA 1TF3A 2V85A 4BS9A 2EL4A 2JYAA 5AC5A 4KHPE 2YSPA 2EOEA 1PJSA 1NEIA 4DV6E 2M1SA 1EKZA 2MDRA 4WXCA 4LF6E 3EPLA 2YU8A 4GZNC 2EM0A 2RS6A 1T4OA 2EMFA 2GPIA 4LFBE 3P1XA 4L8NA 2LTRA 3ECRA 2YRMA 5KL5A 1SFEA 1IBKE 4DUYE 1WHQA 2L3CA 2MKDA 3KZYA 2EORA 1BB8A 3VK6A 3C4TA 2MDGA 4JI4E 1Z1BA 2DRPA 4F6NA 2N3GA 2A25A 1AAYA 1PKPA 4B3TE 4X66E 2KONA 5KL6A 2I9IA 2NUFA 1X3CA 4LFAE 1YYKA 2LE2A 5KL3A 3HPSA 4LF7E 2G7HA 2EM9A 4ZYEA 4LF5E 1YFHA 5A6BA 1IQOA 2EMBA 4GKKE 2LV2A 1JK1A 2EM3A 2HJJA 1ZAAC 4WYQB 2GHFA 2EN3A 3TQMA 2WCC3 2LCEA 2JY9A 1F2IG 2LO3A 1YZ9A 2F8BA 4R2CA 3J81C 2UUCE 4F54A 2YTOA 2DGCA 2VQEE 2FV4B 2CSHA 2KHXA 2M7QA 5LMUE 4NZVA 2VF1A 2H36X 2ODRC 1ZU1A 2EMHA 1KJKA 2YTPA 1A1KA 2JP9A 2J7JA 4N4RB 4BHCA 1XMQE 5F3WA 2LMZA 2EN6A 1O0WA 3VYYA 2EPXA 2VRDA 4YY3E 1YPNA 5LMNE 2ELYA 5CFFE 4B3RE 2LUQA 4P78A 4DV3E 1XNQE 2UUBE 1FKAE 2HC5A 4JI0E 2LUPB 2EPAA 4WSGA 5A6AA 3IWBA 2NABA 1WXRA 5A2QC 4KZSA 4OOGC 2V83A 2YT4A 4O24A 1QU6A 4IS1C 4JI3E 2EPLX 3OTOE
chains in the Genus database with same CATH topology
4HEIA 1IMUA 1N3GA 1L4SA 3TQMA 2YWQA 2RQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HEI A;  1IMU A;  1N3G A;  1L4S A;  3TQM A;  2YWQ A;  2RQL A; 
#chains in the Genus database with same CATH topology
 2EMZ A;  2L3J A;  2LT7 A;  3JU0 A;  1GZ6 A;  2RSI A;  3F6G A;  4O4K A;  2UXD E;  2E1M A;  4JI7 E;  3AUZ A;  1T4L B;  5LLQ A;  1SR9 A;  4JI8 E;  1YYO A;  1PJT A;  4R2A A;  1T39 A;  5ADZ A;  3MHS C;  2EM5 A;  4M2Z A;  1HNZ E;  2RSM A;  2EMY A;  3C6M A;  1UIL A;  3ZOQ B;  4P7D A;  3IWD A;  4BHB A;  1KYQ A;  5AE2 A;  4J8Z A;  3M99 B;  2JR1 A;  2JVA A;  1EH6 A;  2YRK A;  4NHR A;  4DV1 E;  2EQ0 A;  4BBY A;  1N34 E;  2GLI A;  2YTD A;  2I13 A;  1N36 E;  2EQ3 A;  5AE3 A;  2EL6 A;  2L2K B;  4JI2 E;  1X6F A;  2EMI A;  1LLM C;  2EPN A;  3J7Y p;  1UBD C;  2B7V A;  4X8W A;  4DV2 E;  3HQ1 A;  3L00 A;  2CTD A;  4LF4 E;  1AH5 A;  2EMK A;  2ZM6 E;  2LTS A;  3AV0 A;  4WX9 A;  1QNT A;  2EL5 A;  2YU5 A;  3ADG A;  2HGH A;  3HPZ A;  4DR7 E;  2KOU A;  2V86 A;  4R2D A;  1BBG A;  1ZBT A;  4NXM E;  2LJU A;  4DKK A;  1PDA A;  2EN7 A;  4LU9 A;  1N3G A;  1X49 A;  2NUE A;  2HHH E;  2YTF A;  5A6B D;  4RH8 A;  1STU A;  2EOM A;  4B3S E;  3DF6 A;  1IBL E;  1HNX E;  2JXP A;  2L92 A;  1J26 A;  4JI1 E;  5BR8 E;  2RTX A;  4JYA E;  2R1F A;  3EPH A;  2YTE A;  2LRS A;  4DR5 E;  3H09 A;  2EN8 A;  3BBG A;  4M0V A;  1X6E A;  2CPN A;  1A1I A;  4X62 E;  2ODR D;  1J5E E;  3JAM C;  2EPP A;  1I94 E;  2L33 A;  2EPC A;  4WPY A;  4AQY E;  1L4S A;  4JI6 E;  3J80 C;  2EOY A;  2DIX A;  2EOQ A;  1GTK A;  2YTI A;  4DR4 E;  4BC9 A;  2PRT A;  1MEY C;  3HXL A;  2ENA A;  2YRH A;  3J7A G;  5KL2 A;  2VE7 C;  1UHZ A;  3UK3 C;  3BF2 A;  2B3T B;  1A1J A;  2L2M A;  4GKJ E;  3LLH A;  1T4N A;  5A6J A;  4R2R A;  4O5G A;  4JI5 E;  1TF6 A;  3QG5 C;  2EMX A;  2EM6 A;  4F9A B;  2EM4 A;  2EML A;  2EPK X;  1WHN A;  2EPR A;  5IV8 B;  2EM2 A;  4ZYD A;  1MGT A;  1X6H A;  2UXC E;  4NXN E;  1ZR9 A;  2EP3 A;  5IXM B;  2EN1 A;  4R03 A;  4DV7 E;  5A69 A;  1DI2 A;  4DV0 E;  4I8O A;  4MLV A;  2EOF A;  4R2S A;  1DGC A;  4X64 E;  5TSE A;  4DR2 E;  3KWR A;  3EPJ A;  2ADR A;  2YZT A;  2DB2 A;  2EPU A;  3F6H A;  2JOB A;  2DSY A;  2DLK A;  2NA2 A;  3MHH C;  1X48 A;  1N33 E;  2WBT A;  2RS7 A;  1HR0 E;  1YUJ A;  2L8T A;  5KL4 A;  1B69 A;  5T6J A;  2EN4 A;  2K4V A;  1WRJ A;  1RC7 A;  4HTG A;  1YYW A;  4DV4 E;  4MLQ A;  3LML A;  1HNW E;  4IJD A;  1RQ0 A;  2B9D A;  1X5W A;  4BCA A;  2EPZ A;  4DR6 E;  2L6M A;  2E72 A;  5AC4 A;  4JV5 E;  4KWY A;  1UN6 B;  2R76 A;  4Q35 B;  3C6K A;  1FJG E;  4R8O A;  2EMA A;  5FLX C;  1DQ3 A;  5AAS A;  2EPM X;  4DR3 E;  2MKN A;  4DR1 E;  4L5N C;  4WXD A;  3T1Y E;  2EQ1 A;  2EMW A;  3RMP A;  2L2N A;  1T38 A;  3EPK A;  2WBS A;  3BID A;  2LVH A;  5DNY A;  4YHH E;  4X65 E;  3ADL A;  4R2P A;  3THN A;  4WFT A;  2EMC A;  2UUA E;  1A1L A;  4DMI A;  2LJH A;  2ENH A;  2IHR 1;  2YTQ A;  2BB8 A;  4BMJ A;  3MSW A;  1YSA C;  1X47 A;  3JTZ A;  4WSP A;  2FGG A;  2EOS A;  4F2J C;  4F9B B;  2K7I A;  1NCS A;  2NUG A;  1PJQ A;  2JPA A;  2YTG A;  2DLQ A;  1N32 E;  2D9H A;  3K6Q A;  3HTX A;  2UU9 E;  4R2Q A;  5A6K A;  4DUZ E;  4F9C B;  2WBU A;  2RQL A;  2EMG A;  2EOH A;  4ZYH A;  4O43 A;  3DJW A;  4R2E A;  2YPN A;  1G2F C;  2YSO A;  2EWL A;  1YUI A;  3FIG A;  2VQF E;  1TN9 A;  1P47 A;  2ELZ A;  3VYX A;  3BGH A;  1IBM E;  2EM7 A;  2LBS B;  2V89 A;  2DMI A;  1IQS A;  4TUI A;  2B7T A;  2V87 A;  1A1F A;  2EM8 A;  2M9A A;  5IWA E;  3T1H E;  2F4V E;  1BBO A;  5IT9 C;  1WJP A;  2BBG A;  2EOX A;  2EOI A;  2UXB E;  2EOO A;  2EOZ A;  2RPC A;  2MC5 A;  2V8Q B;  4FK5 C;  5KL7 A;  1JK2 A;  1A1H A;  4X9J A;  5LL6 R;  2JOX A;  2M4I A;  2YTN A;  2FTX B;  3OML A;  4B3M E;  3C4B A;  1XNR E;  4GEQ B;  4BC7 A;  2YWQ A;  3ADJ A;  2N8X A;  2EJ4 A;  1GQE A;  2V88 A;  4TUG A;  1G2D C;  4OX9 E;  2EZ6 A;  2E5L E;  4Q28 A;  4DV5 E;  4ZYG A;  1RMD A;  4M9V C;  1XMO E;  2CT1 A;  4M30 A;  3KZZ A;  3THO B;  2EN2 A;  2EE8 A;  3ADI A;  4LF9 E;  2N3H A;  2MC6 A;  3IWC A;  3VHT B;  2DMY A;  4LTY A;  2WZO A;  4F6M A;  1ZBQ A;  4LFC E;  2ENC A;  2YTJ A;  3EQ1 A;  5AE1 A;  4LF8 E;  4K0K E;  2EOJ A;  1EH8 A;  4HEI A;  2JWO A;  1IMU A;  2EPO A;  1EH7 A;  4RHB B;  2Q8U A;  1A1G A;  1TF3 A;  2V85 A;  4BS9 A;  2EL4 A;  2JYA A;  5AC5 A;  4KHP E;  2YSP A;  2EOE A;  1PJS A;  1NEI A;  4DV6 E;  2M1S A;  1EKZ A;  2MDR A;  4WXC A;  4LF6 E;  3EPL A;  2YU8 A;  4GZN C;  2EM0 A;  2RS6 A;  1T4O A;  2EMF A;  2GPI A;  4LFB E;  3P1X A;  4L8N A;  2LTR A;  3ECR A;  2YRM A;  5KL5 A;  1SFE A;  1IBK E;  4DUY E;  1WHQ A;  2L3C A;  2MKD A;  3KZY A;  2EOR A;  1BB8 A;  3VK6 A;  3C4T A;  2MDG A;  4JI4 E;  1Z1B A;  2DRP A;  4F6N A;  2N3G A;  2A25 A;  1AAY A;  1PKP A;  4B3T E;  4X66 E;  2KON A;  5KL6 A;  2I9I A;  2NUF A;  1X3C A;  4LFA E;  1YYK A;  2LE2 A;  5KL3 A;  3HPS A;  4LF7 E;  2G7H A;  2EM9 A;  4ZYE A;  4LF5 E;  1YFH A;  5A6B A;  1IQO A;  2EMB A;  4GKK E;  2LV2 A;  1JK1 A;  2EM3 A;  2HJJ A;  1ZAA C;  4WYQ B;  2GHF A;  2EN3 A;  3TQM A;  2WCC 3;  2LCE A;  2JY9 A;  1F2I G;  2LO3 A;  1YZ9 A;  2F8B A;  4R2C A;  3J81 C;  2UUC E;  4F54 A;  2YTO A;  2DGC A;  2VQE E;  2FV4 B;  2CSH A;  2KHX A;  2M7Q A;  5LMU E;  4NZV A;  2VF1 A;  2H36 X;  2ODR C;  1ZU1 A;  2EMH A;  1KJK A;  2YTP A;  1A1K A;  2JP9 A;  2J7J A;  4N4R B;  4BHC A;  1XMQ E;  5F3W A;  2LMZ A;  2EN6 A;  1O0W A;  3VYY A;  2EPX A;  2VRD A;  4YY3 E;  1YPN A;  5LMN E;  2ELY A;  5CFF E;  4B3R E;  2LUQ A;  4P78 A;  4DV3 E;  1XNQ E;  2UUB E;  1FKA E;  2HC5 A;  4JI0 E;  2LUP B;  2EPA A;  4WSG A;  5A6A A;  3IWB A;  2NAB A;  1WXR A;  5A2Q C;  4KZS A;  4OOG C;  2V83 A;  2YT4 A;  4O24 A;  1QU6 A;  4IS1 C;  4JI3 E;  2EPL X;  3OTO E; 
#chains in the Genus database with same CATH homology
 4HEI A;  1IMU A;  1N3G A;  1L4S A;  3TQM A;  2YWQ A;  2RQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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