2RQLA

Solution structure of the e. coli ribosome hibernation promoting factor hpf
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
95
structure length
95
Chain Sequence
MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
source organism Escherichia coli
publication title Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function.
pubmed doi rcsb
molecule keywords Probable sigma-54 modulation protein
total genus 21
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2009-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 2rqlA00
1N3GA 2YWQA 1IMUA 2RQLA 3TQMA 1L4SA 4HEIA
chains in the Genus database with same CATH superfamily
2KHXA 1N36E 1HNXE 2WZOA 2EPCA 4JI1E 1XNQE 2RS7A 1T38A 2B7VA 2EMWA 4JI8E 4JI4E 2LJUA 2HJJA 5AE2A 2EMFA 4L5NC 2YTIA 4X65E 5LMUE 2UUCE 1F2IG 4GEQB 2CSHA 4LU9A 4YHHE 2ZM6E 4LFBE 2EOMA 2JXPA 4M2ZA 2EOIA 2EOZA 2L3CA 2VRDA 1YZ9A 2L2MA 2V86A 2V8QB 3VHTB 2WCC3 1EH8A 1I94E 2EL6A 2EMIA 2EMXA 3VK6A 4X8WA 4F9CB 4LF4E 2DIXA 2ELYA 4YY3E 1JK2A 3M99B 1X6HA 1A1GA 2EPAA 2E1MA 4KWYA 1STUA 1YSAC 1DGCA 3EPHA 2PRTA 5KL7A 2MDRA 2DMIA 2DB2A 2M4IA 1TF6A 1GTKA 2EOEA 2DMYA 5A6BA 1DI2A 2YTGA 1UBDC 2EPPA 1GZ6A 1JK1A 5KL4A 1B69A 5LLQA 1RC7A 2EM6A 4DR6E 1YYKA 2EPXA 3HQ1A 2G7HA 4F6MA 2IHR1 2EMKA 1X5WA 4GZNC 1Z1BA 4OOGC 2EOYA 1SFEA 1ZBTA 3EPKA 4R2DA 4R2CA 3VYXA 2YTPA 1BB8A 2EN8A 4NZVA 4M9VC 2EPOA 1HNZE 3F6HA 2EJ4A 2EPMX 2M7QA 1IBKE 1N32E 3THOB 2ENHA 2BBGA 4DR3E 1A1JA 2LJHA 2EOXA 5A6KA 2RS6A 2LV2A 2MKDA 2ADRA 4HTGA 2JR1A 2YSPA 1TN9A 2L3JA 4JI0E 3C4TA 4GKJE 2YSOA 5A69A 3ADIA 2V89A 5AASA 2L2NA 1PJTA 3HPSA 2VE7C 5KL3A 1X48A 2R76A 2V88A 3BF2A 1T39A 3KWRA 1IMUA 2HHHE 2J7JA 3BBGA 4DV7E 2YTJA 1PDAA 2DLKA 4J8ZA 1XNRE 1ZBQA 3IWDA 4BS9A 2FTXB 3THNA 2JVAA 1PJQA 4O4KA 4P7DA 2B9DA 4LF6E 2EMCA 3C4BA 5BR8E 2LTSA 3K6QA 1KYQA 1HR0E 2BB8A 2RPCA 1PJSA 1T4LB 2V87A 4R2PA 1IQOA 2RSMA 1BBGA 3EPJA 3MSWA 5FLXC 2EOQA 2EM5A 2E72A 2EMLA 2LUQA 4LF9E 4NXME 2LBSB 2LRSA 4MLQA 4F2JC 3J7AG 4JI6E 5TSEA 4R2SA 2MDGA 2EZ6A 3P1XA 3KZYA 4BHCA 3J81C 3LMLA 4DR2E 2UUBE 3MHHC 2EPNA 5LL6R 2YZTA 3J80C 2EN2A 5AE3A 3L00A 1N33E 3OTOE 2RQLA 4BC7A 2L2KB 2YU5A 1AH5A 2EMHA 1YUJA 2EOSA 2YTNA 4M0VA 4DKKA 2V85A 2N8XA 1T4NA 4DUYE 2NABA 4BBYA 2GPIA 2LO3A 1PKPA 4ZYEA 4ZYGA 1YPNA 4DV3E 4NHRA 1A1FA 2EOFA 3VYYA 2GHFA 2EORA 2EPZA 4JI7E 1AAYA 5AC5A 4WPYA 4RH8A 3QG5C 2YTDA 4ZYHA 1NEIA 4BC9A 5A6JA 4R2EA 2UXCE 4DMIA 1TF3A 1J5EE 1X3CA 2EL5A 4LF7E 2NUFA 3C6MA 4GKKE 4F9AB 2HGHA 2N3GA 2EPRA 3FIGA 4X62E 2LMZA 2L6MA 2B3TB 4NXNE 2EM2A 2LVHA 2EM0A 2HC5A 1NCSA 2WBSA 1UHZA 2EMBA 2KONA 2YU8A 1N34E 2EPLX 2JOBA 3T1HE 3AUZA 3C6KA 5IV8B 2EN6A 2EMZA 1UILA 2YRHA 2JOXA 2EPKX 2UXBE 5LMNE 2JYAA 4JI5E 3LLHA 3OMLA 2L92A 1RMDA 1LLMC 3F6GA 2EMAA 2EP3A 2EM3A 3KZZA 1EH7A 2K7IA 4TUGA 1YFHA 1X47A 4BMJA 4WFTA 3IWCA 4K0KE 1X6FA 2RSIA 2LE2A 1N3GA 2DSYA 2F4VE 2LUPB 2EL4A 2M9AA 4HEIA 4O5GA 1WXRA 4TUIA 4R03A 1X6EA 2YTEA 1A1IA 5A6AA 1QNTA 1G2FC 4WSGA 2VQEE 3T1YE 4LF8E 2CT1A 2EM4A 4AQYE 5IT9C 2I9IA 2EMYA 2GLIA 2UU9E 2F8BA 2YRMA 2JWOA 2DRPA 2I13A 5KL6A 2JY9A 4Q35B 2EE8A 2EN3A 4MLVA 2VF1A 4BCAA 4WX9A 4M30A 4JI2E 2LTRA 2L8TA 4JV5E 2EOHA 2MKNA 2YTFA 4DV5E 2FV4B 3HXLA 4DV0E 2ENAA 2EQ1A 4Q28A 5IWAE 1A1KA 2EPUA 1A1HA 1ZAAC 1T4OA 3ADGA 1SR9A 2EOOA 3TQMA 2D9HA 4WSPA 3HPZA 1ZU1A 4I8OA 4IS1C 1XMOE 4DV1E 2YWQA 1YYWA 5KL2A 1MEYC 4B3SE 3UK3C 4DR4E 2YTOA 1X49A 2UUAE 3JTZA 2R1FA 4F6NA 2WBUA 1KJKA 5T6JA 4WYQB 2EMGA 1YUIA 5A2QC 4RHBB 3AV0A 3JAMC 3H09A 1P47A 1QU6A 3DJWA 1ZR9A 1IBLE 2EN1A 4WXCA 3ZOQB 4DV2E 3MHSC 4LF5E 2M1SA 3EPLA 2MC5A 5DNYA 4JI3E 2EM8A 4L8NA 2UXDE 3JU0A 4F54A 1WRJA 5KL5A 2ODRC 5CFFE 3IWBA 4OX9E 4ZYDA 1MGTA 2NA2A 4DUZE 4WXDA 4DV6E 2EM7A 3BIDA 2LT7A 3HTXA 2E5LE 2YPNA 5ADZA 2EM9A 1EH6A 2EQ0A 4BHBA 2FGGA 2EN4A 1FJGE 4DR7E 5A6BD 2ODRD 1FKAE 2K4VA 2EQ3A 2L33A 1IQSA 4DV4E 2JPAA 3ADLA 1WJPA 4B3RE 4R2AA 4IJDA 2A25A 4B3ME 4LFCE 1O0WA 2NUGA 1DQ3A 1GQEA 3DF6A 4KZSA 2NUEA 4FK5C 1G2DC 3EQ1A 1WHQA 2EWLA 4F9BB 2DLQA 1XMQE 1BBOA 1YYOA 2V83A 5F3WA 4B3TE 2YT4A 1UN6B 2N3HA 4O24A 2CPNA 1L4SA 2B7TA 2H36X 2YRKA 1WHNA 4N4RB 1A1LA 3RMPA 2LCEA 2YTQA 3BGHA 4LFAE 2DGCA 4O43A 4LTYA 1RQ0A 4X66E 1J26A 5AE1A 2VQFE 1HNWE 4DR1E 4R2RA 2CTDA 3ADJA 4P78A 4JYAE 3ECRA 5AC4A 4DR5E 2MC6A 5IXMB 2ELZA 2EN7A 1EKZA 2KOUA 4R8OA 4R2QA 2JP9A 2RTXA 4KHPE 2ENCA 2Q8UA 4X64E 2EOJA 4X9JA 3J7Yp 1IBME 2WBTA
chains in the Genus database with same CATH topology
1N3GA 2YWQA 1IMUA 2RQLA 3TQMA 1L4SA 4HEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N3G A;  2YWQ A;  1IMU A;  2RQL A;  3TQM A;  1L4S A;  4HEI A; 
#chains in the Genus database with same CATH topology
 2KHX A;  1N36 E;  1HNX E;  2WZO A;  2EPC A;  4JI1 E;  1XNQ E;  2RS7 A;  1T38 A;  2B7V A;  2EMW A;  4JI8 E;  4JI4 E;  2LJU A;  2HJJ A;  5AE2 A;  2EMF A;  4L5N C;  2YTI A;  4X65 E;  5LMU E;  2UUC E;  1F2I G;  4GEQ B;  2CSH A;  4LU9 A;  4YHH E;  2ZM6 E;  4LFB E;  2EOM A;  2JXP A;  4M2Z A;  2EOI A;  2EOZ A;  2L3C A;  2VRD A;  1YZ9 A;  2L2M A;  2V86 A;  2V8Q B;  3VHT B;  2WCC 3;  1EH8 A;  1I94 E;  2EL6 A;  2EMI A;  2EMX A;  3VK6 A;  4X8W A;  4F9C B;  4LF4 E;  2DIX A;  2ELY A;  4YY3 E;  1JK2 A;  3M99 B;  1X6H A;  1A1G A;  2EPA A;  2E1M A;  4KWY A;  1STU A;  1YSA C;  1DGC A;  3EPH A;  2PRT A;  5KL7 A;  2MDR A;  2DMI A;  2DB2 A;  2M4I A;  1TF6 A;  1GTK A;  2EOE A;  2DMY A;  5A6B A;  1DI2 A;  2YTG A;  1UBD C;  2EPP A;  1GZ6 A;  1JK1 A;  5KL4 A;  1B69 A;  5LLQ A;  1RC7 A;  2EM6 A;  4DR6 E;  1YYK A;  2EPX A;  3HQ1 A;  2G7H A;  4F6M A;  2IHR 1;  2EMK A;  1X5W A;  4GZN C;  1Z1B A;  4OOG C;  2EOY A;  1SFE A;  1ZBT A;  3EPK A;  4R2D A;  4R2C A;  3VYX A;  2YTP A;  1BB8 A;  2EN8 A;  4NZV A;  4M9V C;  2EPO A;  1HNZ E;  3F6H A;  2EJ4 A;  2EPM X;  2M7Q A;  1IBK E;  1N32 E;  3THO B;  2ENH A;  2BBG A;  4DR3 E;  1A1J A;  2LJH A;  2EOX A;  5A6K A;  2RS6 A;  2LV2 A;  2MKD A;  2ADR A;  4HTG A;  2JR1 A;  2YSP A;  1TN9 A;  2L3J A;  4JI0 E;  3C4T A;  4GKJ E;  2YSO A;  5A69 A;  3ADI A;  2V89 A;  5AAS A;  2L2N A;  1PJT A;  3HPS A;  2VE7 C;  5KL3 A;  1X48 A;  2R76 A;  2V88 A;  3BF2 A;  1T39 A;  3KWR A;  1IMU A;  2HHH E;  2J7J A;  3BBG A;  4DV7 E;  2YTJ A;  1PDA A;  2DLK A;  4J8Z A;  1XNR E;  1ZBQ A;  3IWD A;  4BS9 A;  2FTX B;  3THN A;  2JVA A;  1PJQ A;  4O4K A;  4P7D A;  2B9D A;  4LF6 E;  2EMC A;  3C4B A;  5BR8 E;  2LTS A;  3K6Q A;  1KYQ A;  1HR0 E;  2BB8 A;  2RPC A;  1PJS A;  1T4L B;  2V87 A;  4R2P A;  1IQO A;  2RSM A;  1BBG A;  3EPJ A;  3MSW A;  5FLX C;  2EOQ A;  2EM5 A;  2E72 A;  2EML A;  2LUQ A;  4LF9 E;  4NXM E;  2LBS B;  2LRS A;  4MLQ A;  4F2J C;  3J7A G;  4JI6 E;  5TSE A;  4R2S A;  2MDG A;  2EZ6 A;  3P1X A;  3KZY A;  4BHC A;  3J81 C;  3LML A;  4DR2 E;  2UUB E;  3MHH C;  2EPN A;  5LL6 R;  2YZT A;  3J80 C;  2EN2 A;  5AE3 A;  3L00 A;  1N33 E;  3OTO E;  2RQL A;  4BC7 A;  2L2K B;  2YU5 A;  1AH5 A;  2EMH A;  1YUJ A;  2EOS A;  2YTN A;  4M0V A;  4DKK A;  2V85 A;  2N8X A;  1T4N A;  4DUY E;  2NAB A;  4BBY A;  2GPI A;  2LO3 A;  1PKP A;  4ZYE A;  4ZYG A;  1YPN A;  4DV3 E;  4NHR A;  1A1F A;  2EOF A;  3VYY A;  2GHF A;  2EOR A;  2EPZ A;  4JI7 E;  1AAY A;  5AC5 A;  4WPY A;  4RH8 A;  3QG5 C;  2YTD A;  4ZYH A;  1NEI A;  4BC9 A;  5A6J A;  4R2E A;  2UXC E;  4DMI A;  1TF3 A;  1J5E E;  1X3C A;  2EL5 A;  4LF7 E;  2NUF A;  3C6M A;  4GKK E;  4F9A B;  2HGH A;  2N3G A;  2EPR A;  3FIG A;  4X62 E;  2LMZ A;  2L6M A;  2B3T B;  4NXN E;  2EM2 A;  2LVH A;  2EM0 A;  2HC5 A;  1NCS A;  2WBS A;  1UHZ A;  2EMB A;  2KON A;  2YU8 A;  1N34 E;  2EPL X;  2JOB A;  3T1H E;  3AUZ A;  3C6K A;  5IV8 B;  2EN6 A;  2EMZ A;  1UIL A;  2YRH A;  2JOX A;  2EPK X;  2UXB E;  5LMN E;  2JYA A;  4JI5 E;  3LLH A;  3OML A;  2L92 A;  1RMD A;  1LLM C;  3F6G A;  2EMA A;  2EP3 A;  2EM3 A;  3KZZ A;  1EH7 A;  2K7I A;  4TUG A;  1YFH A;  1X47 A;  4BMJ A;  4WFT A;  3IWC A;  4K0K E;  1X6F A;  2RSI A;  2LE2 A;  1N3G A;  2DSY A;  2F4V E;  2LUP B;  2EL4 A;  2M9A A;  4HEI A;  4O5G A;  1WXR A;  4TUI A;  4R03 A;  1X6E A;  2YTE A;  1A1I A;  5A6A A;  1QNT A;  1G2F C;  4WSG A;  2VQE E;  3T1Y E;  4LF8 E;  2CT1 A;  2EM4 A;  4AQY E;  5IT9 C;  2I9I A;  2EMY A;  2GLI A;  2UU9 E;  2F8B A;  2YRM A;  2JWO A;  2DRP A;  2I13 A;  5KL6 A;  2JY9 A;  4Q35 B;  2EE8 A;  2EN3 A;  4MLV A;  2VF1 A;  4BCA A;  4WX9 A;  4M30 A;  4JI2 E;  2LTR A;  2L8T A;  4JV5 E;  2EOH A;  2MKN A;  2YTF A;  4DV5 E;  2FV4 B;  3HXL A;  4DV0 E;  2ENA A;  2EQ1 A;  4Q28 A;  5IWA E;  1A1K A;  2EPU A;  1A1H A;  1ZAA C;  1T4O A;  3ADG A;  1SR9 A;  2EOO A;  3TQM A;  2D9H A;  4WSP A;  3HPZ A;  1ZU1 A;  4I8O A;  4IS1 C;  1XMO E;  4DV1 E;  2YWQ A;  1YYW A;  5KL2 A;  1MEY C;  4B3S E;  3UK3 C;  4DR4 E;  2YTO A;  1X49 A;  2UUA E;  3JTZ A;  2R1F A;  4F6N A;  2WBU A;  1KJK A;  5T6J A;  4WYQ B;  2EMG A;  1YUI A;  5A2Q C;  4RHB B;  3AV0 A;  3JAM C;  3H09 A;  1P47 A;  1QU6 A;  3DJW A;  1ZR9 A;  1IBL E;  2EN1 A;  4WXC A;  3ZOQ B;  4DV2 E;  3MHS C;  4LF5 E;  2M1S A;  3EPL A;  2MC5 A;  5DNY A;  4JI3 E;  2EM8 A;  4L8N A;  2UXD E;  3JU0 A;  4F54 A;  1WRJ A;  5KL5 A;  2ODR C;  5CFF E;  3IWB A;  4OX9 E;  4ZYD A;  1MGT A;  2NA2 A;  4DUZ E;  4WXD A;  4DV6 E;  2EM7 A;  3BID A;  2LT7 A;  3HTX A;  2E5L E;  2YPN A;  5ADZ A;  2EM9 A;  1EH6 A;  2EQ0 A;  4BHB A;  2FGG A;  2EN4 A;  1FJG E;  4DR7 E;  5A6B D;  2ODR D;  1FKA E;  2K4V A;  2EQ3 A;  2L33 A;  1IQS A;  4DV4 E;  2JPA A;  3ADL A;  1WJP A;  4B3R E;  4R2A A;  4IJD A;  2A25 A;  4B3M E;  4LFC E;  1O0W A;  2NUG A;  1DQ3 A;  1GQE A;  3DF6 A;  4KZS A;  2NUE A;  4FK5 C;  1G2D C;  3EQ1 A;  1WHQ A;  2EWL A;  4F9B B;  2DLQ A;  1XMQ E;  1BBO A;  1YYO A;  2V83 A;  5F3W A;  4B3T E;  2YT4 A;  1UN6 B;  2N3H A;  4O24 A;  2CPN A;  1L4S A;  2B7T A;  2H36 X;  2YRK A;  1WHN A;  4N4R B;  1A1L A;  3RMP A;  2LCE A;  2YTQ A;  3BGH A;  4LFA E;  2DGC A;  4O43 A;  4LTY A;  1RQ0 A;  4X66 E;  1J26 A;  5AE1 A;  2VQF E;  1HNW E;  4DR1 E;  4R2R A;  2CTD A;  3ADJ A;  4P78 A;  4JYA E;  3ECR A;  5AC4 A;  4DR5 E;  2MC6 A;  5IXM B;  2ELZ A;  2EN7 A;  1EKZ A;  2KOU A;  4R8O A;  4R2Q A;  2JP9 A;  2RTX A;  4KHP E;  2ENC A;  2Q8U A;  4X64 E;  2EOJ A;  4X9J A;  3J7Y p;  1IBM E;  2WBT A; 
#chains in the Genus database with same CATH homology
 1N3G A;  2YWQ A;  1IMU A;  2RQL A;  3TQM A;  1L4S A;  4HEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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