1N3GA

Solution structure of the ribosome-associated cold shock response protein yfia of escherichia coli
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
113
structure length
113
Chain Sequence
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (36-44)3H1 (27-29)O1 (30-32)S3 (47-56)TIV2 (34-37)S4 (59-67)AH2 (70-89)TVIII1 (67-70)TI2 (98-101)TIV6 (100-103)O2 (104-106)S1 (4-5)TIV1 (7-10)AH1 (14-26)Updating...
connected with : NaN
molecule tags Translation
source organism Escherichia coli
publication title Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia col
pubmed doi rcsb
molecule keywords Protein yfiA
total genus 24
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2002-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1n3gA01
2RQLA 1L4SA 1N3GA 3TQMA 4HEIA 1IMUA 2YWQA
chains in the Genus database with same CATH superfamily
4M30A 4X62E 1SFEA 1Z1BA 5AE3A 2EOMA 1PJSA 2N3HA 3T1YE 2LV2A 4F6MA 5AC5A 3J80C 4LF4E 1UN6B 2CPNA 1HNXE 4M2ZA 2KONA 3ADIA 1A1LA 1HNZE 3L00A 1X48A 2RQLA 2E5LE 1ZBQA 1ZU1A 1HR0E 2EPMX 2EOEA 1KYQA 2MDRA 4DUZE 2KHXA 4MLVA 1JK1A 3THNA 5ADZA 3J7Yp 1YSAC 4BC9A 4KZSA 4LFCE 2EM6A 2ELYA 4L8NA 3BIDA 2EJ4A 4ZYEA 4M0VA 4ZYDA 2EN7A 1PDAA 2EN2A 1QU6A 2ADRA 2EP3A 2EPNA 4WX9A 1A1IA 4DR4E 2YRKA 2EPCA 1EH8A 5KL3A 1IBME 2V86A 5AC4A 1TN9A 2EM3A 2ODRD 4LFAE 2EL4A 4YY3E 1UILA 4JYAE 4KWYA 1FJGE 1PJTA 2EE8A 3OTOE 2BBGA 2H36X 1N32E 2UU9E 2DGCA 1FKAE 2V88A 4HEIA 2VQFE 3P1XA 4TUIA 1B69A 1BBOA 4LTYA 2E1MA 3EPHA 3KZYA 2GLIA 2L3CA 3C6MA 4BMJA 2LTRA 5IXMB 4I8OA 4R8OA 2JP9A 2MC6A 4P78A 1O0WA 5A6BA 3MHHC 1N36E 2KOUA 4FK5C 4DMIA 2JXPA 1MGTA 1YFHA 2E72A 3BBGA 1G2DC 1X6FA 2YRMA 4J8ZA 3MHSC 4R2SA 2M7QA 5LLQA 2UUBE 2FTXB 5KL4A 5KL6A 4M9VC 2DB2A 3DJWA 4YHHE 1ZAAC 3ADLA 2WCC3 4DV1E 1A1GA 2EN1A 2FV4B 2EPUA 4O24A 2MKNA 1WHNA 3LLHA 2B7VA 4B3TE 1XMQE 3LMLA 2L2KB 1X47A 5LMUE 2JOXA 4R2QA 3J7AG 2EPZA 2LJUA 3IWCA 2EM2A 3EPLA 2EN8A 2L92A 2V85A 1A1HA 1NCSA 2CTDA 2RSMA 2EPOA 3EPJA 4JI8E 1P47A 2VE7C 4F6NA 1AH5A 4P7DA 5BR8E 4Q35B 1WHQA 2DSYA 2HGHA 2EPLX 2EM5A 4DR3E 1WXRA 4WPYA 2RS7A 4DKKA 3KWRA 3J81C 4BCAA 3DF6A 5A6AA 4BHCA 2JPAA 2EMHA 3VK6A 5KL2A 2YPNA 2DRPA 4OX9E 2YTJA 2L8TA 1STUA 2JR1A 4R2EA 2EN3A 1IBLE 5FLXC 3C4BA 2LMZA 1I94E 2L2NA 3QG5C 4LF7E 2MDGA 2YTGA 5IWAE 1EKZA 1ZBTA 3M99B 2LJHA 5DNYA 1J26A 2VRDA 1PKPA 2EPPA 5CFFE 1TF3A 2YTDA 1A1KA 3BF2A 2GHFA 5IT9C 4LU9A 2CSHA 2NUGA 2B3TB 4X8WA 3UK3C 2M4IA 2F8BA 1LLMC 2RTXA 4LFBE 2EOHA 4BC7A 2EMCA 2EPRA 4OOGC 2WBTA 4R2CA 3C4TA 3ADGA 4GKJE 2HJJA 1A1FA 2EMFA 4R2AA 2JYAA 1UBDC 5TSEA 1G2FC 2LVHA 2YT4A 2I9IA 2EMZA 5A2QC 2YTPA 2HC5A 3VYXA 1T4OA 2EQ0A 2EN6A 2N8XA 2EOZA 4RHBB 1QNTA 4B3RE 4KHPE 4DR5E 1YPNA 2EMGA 1XNRE 2YZTA 2YTNA 4DR6E 3ZOQB 2ELZA 4O43A 1RMDA 4RH8A 4R2RA 2NUEA 2ENCA 3C6KA 3F6GA 4HTGA 3HPSA 2M9AA 3FIGA 2MKDA 1SR9A 3HQ1A 3JTZA 2EMLA 2EM7A 4DR1E 5F3WA 2WZOA 3BGHA 2V8QB 2UXCE 1WJPA 1BBGA 1KJKA 2RS6A 1J5EE 2EOOA 1AAYA 4LF8E 2EMYA 2L33A 2NA2A 2Q8UA 4DV4E 2ODRC 2R1FA 1EH7A 4DV6E 4JI3E 4NHRA 4X9JA 3KZZA 4NZVA 2LCEA 1ZR9A 2EPAA 1T38A 1IQOA 4R2DA 1BB8A 2DLKA 2EMXA 1F2IG 4IS1C 4MLQA 4GEQB 2L3JA 1IBKE 3EPKA 2YRHA 4DV7E 4LF6E 4NXME 2EMWA 2M1SA 3T1HE 2EPKX 2UUCE 4GZNC 2N3GA 1PJQA 2FGGA 2L6MA 2BB8A 2LBSB 1YYWA 5A6JA 4B3SE 1YZ9A 1HNWE 2ENHA 1IMUA 2EOXA 1UHZA 3AV0A 4WYQB 2YWQA 2EZ6A 1L4SA 2A25A 3H09A 4O4KA 4X66E 2PRTA 3VHTB 2EMAA 2EORA 3F6HA 2EOFA 4JV5E 2DMIA 5AE2A 5KL5A 4BBYA 4DV3E 1X6HA 1N3GA 2I13A 2L2MA 1X49A 1DQ3A 3HPZA 2NABA 2WBSA 4JI5E 1EH6A 4JI4E 1X5WA 1XNQE 3AUZA 3HTXA 5T6JA 4IJDA 3JU0A 3JAMC 4JI2E 1GZ6A 2V89A 1JK2A 1A1JA 4ZYGA 2CT1A 4ZYHA 2D9HA 3OMLA 2LE2A 4JI1E 2LUPB 1XMOE 2HHHE 2EMIA 4AQYE 2YU5A 1NEIA 2J7JA 1WRJA 2LT7A 2EOJA 4F9BB 2EM0A 1X6EA 4X65E 1N34E 4F54A 3RMPA 1X3CA 5A6KA 2V83A 5LMNE 1DI2A 1MEYC 5LL6R 2UUAE 4WFTA 2LRSA 4R03A 2JY9A 2VQEE 2YSOA 2ZM6E 4DR7E 2UXBE 2WBUA 2RSIA 4F2JC 3THOB 5A6BD 2ENAA 2F4VE 2JVAA 4JI6E 1T4NA 2LO3A 4BHBA 1YYOA 2EL6A 4O5GA 2EMKA 3TQMA 4DV2E 4DR2E 4X64E 1T4LB 4BS9A 4JI0E 4N4RB 4DUYE 5AE1A 1DGCA 4NXNE 2UXDE 2RPCA 2EOIA 5IV8B 2K4VA 3IWBA 2EQ3A 1N33E 4TUGA 1YUJA 2YTQA 4LF9E 4F9AB 5A69A 4WSGA 2JWOA 2EOSA 2GPIA 4GKKE 2DLQA 2LTSA 1RQ0A 2EM8A 4DV0E 2YSPA 2B7TA 2K7IA 4LF5E 2EWLA 4Q28A 4WXDA 3MSWA 2B9DA 5KL7A 3HXLA 4JI7E 2MC5A 2YTOA 4WSPA 1GQEA 2EPXA 4DV5E 1TF6A 4WXCA 2EQ1A 2JOBA 5AASA 2EM4A 2LUQA 2YTIA 1YUIA 3ADJA 2DMYA 4L5NC 2EOYA 2EN4A 2YTFA 3K6QA 1YYKA 2G7HA 2EOQA 2EL5A 2YTEA 1IQSA 2R76A 3VYYA 2EMBA 4R2PA 2NUFA 2IHR1 3EQ1A 4B3ME 3IWDA 1RC7A 2EM9A 2DIXA 2V87A 2YU8A 1T39A 4K0KE 1GTKA 4F9CB 3ECRA 2VF1A
chains in the Genus database with same CATH topology
2RQLA 1L4SA 1N3GA 3TQMA 4HEIA 1IMUA 2YWQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQL A;  1L4S A;  1N3G A;  3TQM A;  4HEI A;  1IMU A;  2YWQ A; 
#chains in the Genus database with same CATH topology
 4M30 A;  4X62 E;  1SFE A;  1Z1B A;  5AE3 A;  2EOM A;  1PJS A;  2N3H A;  3T1Y E;  2LV2 A;  4F6M A;  5AC5 A;  3J80 C;  4LF4 E;  1UN6 B;  2CPN A;  1HNX E;  4M2Z A;  2KON A;  3ADI A;  1A1L A;  1HNZ E;  3L00 A;  1X48 A;  2RQL A;  2E5L E;  1ZBQ A;  1ZU1 A;  1HR0 E;  2EPM X;  2EOE A;  1KYQ A;  2MDR A;  4DUZ E;  2KHX A;  4MLV A;  1JK1 A;  3THN A;  5ADZ A;  3J7Y p;  1YSA C;  4BC9 A;  4KZS A;  4LFC E;  2EM6 A;  2ELY A;  4L8N A;  3BID A;  2EJ4 A;  4ZYE A;  4M0V A;  4ZYD A;  2EN7 A;  1PDA A;  2EN2 A;  1QU6 A;  2ADR A;  2EP3 A;  2EPN A;  4WX9 A;  1A1I A;  4DR4 E;  2YRK A;  2EPC A;  1EH8 A;  5KL3 A;  1IBM E;  2V86 A;  5AC4 A;  1TN9 A;  2EM3 A;  2ODR D;  4LFA E;  2EL4 A;  4YY3 E;  1UIL A;  4JYA E;  4KWY A;  1FJG E;  1PJT A;  2EE8 A;  3OTO E;  2BBG A;  2H36 X;  1N32 E;  2UU9 E;  2DGC A;  1FKA E;  2V88 A;  4HEI A;  2VQF E;  3P1X A;  4TUI A;  1B69 A;  1BBO A;  4LTY A;  2E1M A;  3EPH A;  3KZY A;  2GLI A;  2L3C A;  3C6M A;  4BMJ A;  2LTR A;  5IXM B;  4I8O A;  4R8O A;  2JP9 A;  2MC6 A;  4P78 A;  1O0W A;  5A6B A;  3MHH C;  1N36 E;  2KOU A;  4FK5 C;  4DMI A;  2JXP A;  1MGT A;  1YFH A;  2E72 A;  3BBG A;  1G2D C;  1X6F A;  2YRM A;  4J8Z A;  3MHS C;  4R2S A;  2M7Q A;  5LLQ A;  2UUB E;  2FTX B;  5KL4 A;  5KL6 A;  4M9V C;  2DB2 A;  3DJW A;  4YHH E;  1ZAA C;  3ADL A;  2WCC 3;  4DV1 E;  1A1G A;  2EN1 A;  2FV4 B;  2EPU A;  4O24 A;  2MKN A;  1WHN A;  3LLH A;  2B7V A;  4B3T E;  1XMQ E;  3LML A;  2L2K B;  1X47 A;  5LMU E;  2JOX A;  4R2Q A;  3J7A G;  2EPZ A;  2LJU A;  3IWC A;  2EM2 A;  3EPL A;  2EN8 A;  2L92 A;  2V85 A;  1A1H A;  1NCS A;  2CTD A;  2RSM A;  2EPO A;  3EPJ A;  4JI8 E;  1P47 A;  2VE7 C;  4F6N A;  1AH5 A;  4P7D A;  5BR8 E;  4Q35 B;  1WHQ A;  2DSY A;  2HGH A;  2EPL X;  2EM5 A;  4DR3 E;  1WXR A;  4WPY A;  2RS7 A;  4DKK A;  3KWR A;  3J81 C;  4BCA A;  3DF6 A;  5A6A A;  4BHC A;  2JPA A;  2EMH A;  3VK6 A;  5KL2 A;  2YPN A;  2DRP A;  4OX9 E;  2YTJ A;  2L8T A;  1STU A;  2JR1 A;  4R2E A;  2EN3 A;  1IBL E;  5FLX C;  3C4B A;  2LMZ A;  1I94 E;  2L2N A;  3QG5 C;  4LF7 E;  2MDG A;  2YTG A;  5IWA E;  1EKZ A;  1ZBT A;  3M99 B;  2LJH A;  5DNY A;  1J26 A;  2VRD A;  1PKP A;  2EPP A;  5CFF E;  1TF3 A;  2YTD A;  1A1K A;  3BF2 A;  2GHF A;  5IT9 C;  4LU9 A;  2CSH A;  2NUG A;  2B3T B;  4X8W A;  3UK3 C;  2M4I A;  2F8B A;  1LLM C;  2RTX A;  4LFB E;  2EOH A;  4BC7 A;  2EMC A;  2EPR A;  4OOG C;  2WBT A;  4R2C A;  3C4T A;  3ADG A;  4GKJ E;  2HJJ A;  1A1F A;  2EMF A;  4R2A A;  2JYA A;  1UBD C;  5TSE A;  1G2F C;  2LVH A;  2YT4 A;  2I9I A;  2EMZ A;  5A2Q C;  2YTP A;  2HC5 A;  3VYX A;  1T4O A;  2EQ0 A;  2EN6 A;  2N8X A;  2EOZ A;  4RHB B;  1QNT A;  4B3R E;  4KHP E;  4DR5 E;  1YPN A;  2EMG A;  1XNR E;  2YZT A;  2YTN A;  4DR6 E;  3ZOQ B;  2ELZ A;  4O43 A;  1RMD A;  4RH8 A;  4R2R A;  2NUE A;  2ENC A;  3C6K A;  3F6G A;  4HTG A;  3HPS A;  2M9A A;  3FIG A;  2MKD A;  1SR9 A;  3HQ1 A;  3JTZ A;  2EML A;  2EM7 A;  4DR1 E;  5F3W A;  2WZO A;  3BGH A;  2V8Q B;  2UXC E;  1WJP A;  1BBG A;  1KJK A;  2RS6 A;  1J5E E;  2EOO A;  1AAY A;  4LF8 E;  2EMY A;  2L33 A;  2NA2 A;  2Q8U A;  4DV4 E;  2ODR C;  2R1F A;  1EH7 A;  4DV6 E;  4JI3 E;  4NHR A;  4X9J A;  3KZZ A;  4NZV A;  2LCE A;  1ZR9 A;  2EPA A;  1T38 A;  1IQO A;  4R2D A;  1BB8 A;  2DLK A;  2EMX A;  1F2I G;  4IS1 C;  4MLQ A;  4GEQ B;  2L3J A;  1IBK E;  3EPK A;  2YRH A;  4DV7 E;  4LF6 E;  4NXM E;  2EMW A;  2M1S A;  3T1H E;  2EPK X;  2UUC E;  4GZN C;  2N3G A;  1PJQ A;  2FGG A;  2L6M A;  2BB8 A;  2LBS B;  1YYW A;  5A6J A;  4B3S E;  1YZ9 A;  1HNW E;  2ENH A;  1IMU A;  2EOX A;  1UHZ A;  3AV0 A;  4WYQ B;  2YWQ A;  2EZ6 A;  1L4S A;  2A25 A;  3H09 A;  4O4K A;  4X66 E;  2PRT A;  3VHT B;  2EMA A;  2EOR A;  3F6H A;  2EOF A;  4JV5 E;  2DMI A;  5AE2 A;  5KL5 A;  4BBY A;  4DV3 E;  1X6H A;  1N3G A;  2I13 A;  2L2M A;  1X49 A;  1DQ3 A;  3HPZ A;  2NAB A;  2WBS A;  4JI5 E;  1EH6 A;  4JI4 E;  1X5W A;  1XNQ E;  3AUZ A;  3HTX A;  5T6J A;  4IJD A;  3JU0 A;  3JAM C;  4JI2 E;  1GZ6 A;  2V89 A;  1JK2 A;  1A1J A;  4ZYG A;  2CT1 A;  4ZYH A;  2D9H A;  3OML A;  2LE2 A;  4JI1 E;  2LUP B;  1XMO E;  2HHH E;  2EMI A;  4AQY E;  2YU5 A;  1NEI A;  2J7J A;  1WRJ A;  2LT7 A;  2EOJ A;  4F9B B;  2EM0 A;  1X6E A;  4X65 E;  1N34 E;  4F54 A;  3RMP A;  1X3C A;  5A6K A;  2V83 A;  5LMN E;  1DI2 A;  1MEY C;  5LL6 R;  2UUA E;  4WFT A;  2LRS A;  4R03 A;  2JY9 A;  2VQE E;  2YSO A;  2ZM6 E;  4DR7 E;  2UXB E;  2WBU A;  2RSI A;  4F2J C;  3THO B;  5A6B D;  2ENA A;  2F4V E;  2JVA A;  4JI6 E;  1T4N A;  2LO3 A;  4BHB A;  1YYO A;  2EL6 A;  4O5G A;  2EMK A;  3TQM A;  4DV2 E;  4DR2 E;  4X64 E;  1T4L B;  4BS9 A;  4JI0 E;  4N4R B;  4DUY E;  5AE1 A;  1DGC A;  4NXN E;  2UXD E;  2RPC A;  2EOI A;  5IV8 B;  2K4V A;  3IWB A;  2EQ3 A;  1N33 E;  4TUG A;  1YUJ A;  2YTQ A;  4LF9 E;  4F9A B;  5A69 A;  4WSG A;  2JWO A;  2EOS A;  2GPI A;  4GKK E;  2DLQ A;  2LTS A;  1RQ0 A;  2EM8 A;  4DV0 E;  2YSP A;  2B7T A;  2K7I A;  4LF5 E;  2EWL A;  4Q28 A;  4WXD A;  3MSW A;  2B9D A;  5KL7 A;  3HXL A;  4JI7 E;  2MC5 A;  2YTO A;  4WSP A;  1GQE A;  2EPX A;  4DV5 E;  1TF6 A;  4WXC A;  2EQ1 A;  2JOB A;  5AAS A;  2EM4 A;  2LUQ A;  2YTI A;  1YUI A;  3ADJ A;  2DMY A;  4L5N C;  2EOY A;  2EN4 A;  2YTF A;  3K6Q A;  1YYK A;  2G7H A;  2EOQ A;  2EL5 A;  2YTE A;  1IQS A;  2R76 A;  3VYY A;  2EMB A;  4R2P A;  2NUF A;  2IHR 1;  3EQ1 A;  4B3M E;  3IWD A;  1RC7 A;  2EM9 A;  2DIX A;  2V87 A;  2YU8 A;  1T39 A;  4K0K E;  1GTK A;  4F9C B;  3ECR A;  2VF1 A; 
#chains in the Genus database with same CATH homology
 2RQL A;  1L4S A;  1N3G A;  3TQM A;  4HEI A;  1IMU A;  2YWQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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