The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
9
|
sequence length |
49
|
structure length |
49
|
Chain Sequence |
DLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain.
pubmed doi rcsb |
| molecule keywords |
integrase
|
| molecule tags |
Viral protein
|
| source organism |
Enterobacteria phage lambda
|
| total genus |
9
|
| structure length |
49
|
| sequence length |
49
|
| ec nomenclature | |
| pdb deposition date | 2001-12-04 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger |
#chains in the Genus database with same CATH superfamily 2EE8 A; 1A1G A; 2M9A A; 3MHS C; 4WSG A; 4R2Q A; 2DGC A; 2CSH A; 2EMC A; 2EM4 A; 2WBT A; 5KL6 A; 2DLQ A; 1P47 A; 1X3C A; 2EOZ A; 2LCE A; 2EN8 A; 4R2C A; 1LLM C; 2YTI A; 3EPK A; 2EN7 A; 2EP3 A; 2EOJ A; 2LO3 A; 1Z1B A; 1ZU1 A; 2EN6 A; 2EOX A; 1NCS A; 3EPH A; 1WJP A; 2YTO A; 2EMY A; 2YU5 A; 2ELY A; 1YUJ A; 2BB8 A; 1A1J A; 2EOO A; 2EMF A; 2R1F A; 2RPC A; 2ELZ A; 1TF3 A; 1UN6 B; 2NAB A; 2EM9 A; 2EOY A; 1YUI A; 2J7J A; 1JK2 A; 3MHH C; 2MDG A; 1X6E A; 2YSP A; 2LVH A; 5KL7 A; 1A1K A; 1A1I A; 2EM6 A; 2YRH A; 5KL3 A; 3M99 B; 2EMG A; 2YTE A; 2EM7 A; 2DRP A; 1A1H A; 2EMW A; 2HGH A; 2EPZ A; 1YSA C; 4R2E A; 2EPC A; 1G2F C; 2EM3 A; 1BBO A; 2ADR A; 2EM0 A; 2EMI A; 2EL5 A; 2ENA A; 2EN2 A; 1ZR9 A; 2YTQ A; 1BB8 A; 2ENH A; 1B69 A; 2EQ0 A; 4M9V C; 4F6M A; 1MEY C; 1JK1 A; 2PRT A; 2YSO A; 2YRM A; 1G2D C; 4GZN C; 4R2S A; 2EPX A; 5KL2 A; 2A25 A; 2EN4 A; 2LV2 A; 2WBS A; 4X9J A; 1TF6 A; 2EJ4 A; 2EPU A; 1UBD C; 2RSI A; 2EOQ A; 2WBU A; 4R2D A; 1ZAA C; 5KL4 A; 4R2A A; 2DLK A; 2E72 A; 4IS1 C; 1X5W A; 2ENC A; 2EPA A; 2YTP A; 1X6F A; 2EMB A; 2MKD A; 2EOE A; 5KL5 A; 2EOR A; 1AAY A; 2D9H A; 4FK5 C; 1TN9 A; 2JP9 A; 2YRK A; 2VRD A; 2EPP A; 1A1L A; 2LT7 A; 2EQ1 A; 2EN3 A; 1X6H A; 2EM8 A; 2EOS A; 2EMZ A; 2CTD A; 3UK3 C; 2EMA A; 2EM2 A; 2EN1 A; 3EPL A; 2I13 A; 2YTJ A; 2DMI A; 2YU8 A; 3EPJ A; 4IJD A; 3VHT B; 2EMH A; 1A1F A; 2GHF A; 4R2P A; 2GLI A; 2CT1 A; 4F2J C; 1F2I G; 1RMD A; 2YTN A; 2EOH A; 2EL4 A; 2EQ3 A; 2EOF A; 2EPR A; 1KJK A; 2JPA A; 1DGC A; 2EML A; 2EM5 A; 2YTF A; 4F6N A; 2YTD A; 2EL6 A; 2YTG A; 2EMK A; 2MKN A; 4R2R A; 2EMX A; 2EOM A; 2EOI A; 2WCC 3; #chains in the Genus database with same CATH topology 1L4S A; 1IMU A; 4HEI A; 4WSG A; 4R8O A; 1N36 E; 2YZT A; 1N3G A; 1WHQ A; 4LTY A; 3VYY A; 3KWR A; 5KL6 A; 2L2M A; 5BR8 E; 4R2C A; 4WXD A; 2EN7 A; 1AH5 A; 2EP3 A; 2MDR A; 2VQE E; 1IQS A; 2LO3 A; 3DJW A; 5LMN E; 1WJP A; 2EMY A; 2G7H A; 2CPN A; 4JI3 E; 1A1J A; 4O24 A; 1UN6 B; 1EH7 A; 4LF7 E; 2L33 A; 5A6A A; 1JK2 A; 3IWC A; 2YSP A; 1A1K A; 1A1I A; 2KOU A; 4WXC A; 2B3T B; 2EM6 A; 4LF6 E; 2YTE A; 2DRP A; 2B9D A; 5LL6 R; 5A6B D; 2EPC A; 2M4I A; 4KHP E; 3HPS A; 1ZR9 A; 2YTQ A; 2ENH A; 2EQ0 A; 2EPL X; 4M9V C; 2EZ6 A; 2L8T A; 2YSO A; 4NZV A; 1PJT A; 4I8O A; 4TUI A; 4JI7 E; 2L3C A; 4L5N C; 5KL2 A; 5ADZ A; 1YYW A; 1QU6 A; 4WFT A; 4BHB A; 2UXB E; 2UXD E; 4R2D A; 2E72 A; 4X64 E; 2F4V E; 2LRS A; 3KZY A; 1RC7 A; 2EOR A; 4ZYG A; 2N3H A; 2UUA E; 2JP9 A; 2B7T A; 1GQE A; 1YYK A; 4RH8 A; 1A1L A; 4JI0 E; 4BHC A; 4B3S E; 2EPN A; 3ECR A; 1HNZ E; 2LTR A; 3THN A; 2V89 A; 2I13 A; 1HNX E; 2K7I A; 3IWB A; 3VHT B; 3JTZ A; 1A1F A; 2M7Q A; 4R2P A; 2RS7 A; 3T1Y E; 4LFB E; 5A6B A; 2EOH A; 1KJK A; 2JPA A; 1GTK A; 2EML A; 4F6N A; 2KHX A; 2EL6 A; 4LF4 E; 3EQ1 A; 2ZM6 E; 4BS9 A; 4R2R A; 3ZOQ B; 4K0K E; 3QG5 C; 2WCC 3; 4P7D A; 3OML A; 2GPI A; 1PJQ A; 2EE8 A; 2DMY A; 3ADG A; 4DV3 E; 1A1G A; 5AE3 A; 3MHS C; 4DR2 E; 1T4O A; 2DSY A; 3J7A G; 2EMC A; 4B3R E; 1T39 A; 2L2N A; 2HC5 A; 2LCE A; 2EN8 A; 4ZYD A; 2YTI A; 1J26 A; 2YPN A; 4X62 E; 4LU9 A; 3MSW A; 4OX9 E; 1ZU1 A; 5A6K A; 2YTO A; 2BBG A; 2ELY A; 2YU5 A; 1YUJ A; 4B3M E; 5AC4 A; 2EOO A; 4JI2 E; 2IHR 1; 1T38 A; 2NAB A; 1IBL E; 1XNQ E; 3JU0 A; 5KL7 A; 2ODR C; 2VE7 C; 2EMG A; 2V83 A; 2HGH A; 3JAM C; 2LBS B; 5A69 A; 2EPZ A; 1XMO E; 1BBO A; 1STU A; 4R2E A; 2ADR A; 1IBM E; 2EM0 A; 3BBG A; 1N32 E; 1N34 E; 5FLX C; 2EWL A; 5IXM B; 1JK1 A; 2PRT A; 1IBK E; 4L8N A; 1X48 A; 4R2S A; 4OOG C; 4M30 A; 4X9J A; 2RS6 A; 2EPU A; 3J80 C; 2RSI A; 4F9B B; 2V85 A; 3LLH A; 2YT4 A; 3HXL A; 2YWQ A; 2EPA A; 4N4R B; 3DF6 A; 4DUY E; 2YTP A; 2EOE A; 5KL5 A; 1FKA E; 4FK5 C; 1HR0 E; 2YRK A; 2Q8U A; 5DNY A; 2VRD A; 2I9I A; 3C6M A; 2LT7 A; 2EN3 A; 2EM8 A; 3UK3 C; 2CTD A; 1YYO A; 3VYX A; 3T1H E; 5T6J A; 2EN1 A; 3EPL A; 1ZBT A; 1ZBQ A; 2JOB A; 4Q35 B; 2YU8 A; 1BBG A; 2LMZ A; 2L92 A; 3RMP A; 3F6H A; 2GLI A; 2CT1 A; 1PKP A; 4MLQ A; 4DV4 E; 2EL4 A; 5CFF E; 2YTF A; 3TQM A; 4DR5 E; 4BC7 A; 2EOI A; 3KZZ A; 4BC9 A; 1UHZ A; 1WXR A; 4R2Q A; 2MC6 A; 2DGC A; 4ZYH A; 3K6Q A; 3LML A; 1J5E E; 2V8Q B; 2DLQ A; 2JXP A; 2K4V A; 3P1X A; 1P47 A; 2LTS A; 1X3C A; 2EOZ A; 1WRJ A; 3EPK A; 4AQY E; 1Z1B A; 1EKZ A; 3C4B A; 4DV7 E; 2EN6 A; 2EOX A; 2FTX B; 1NCS A; 3EPH A; 4Q28 A; 3BID A; 4O4K A; 1KYQ A; 2R1F A; 2ELZ A; 1TF3 A; 2NUG A; 2UUB E; 1YUI A; 2J7J A; 4DMI A; 2MDG A; 5IWA E; 4DKK A; 1SR9 A; 1EH6 A; 4JI1 E; 5AE1 A; 4GKJ E; 4YHH E; 2V87 A; 2EM3 A; 2V86 A; 2EMI A; 3VK6 A; 2EL5 A; 2EN2 A; 1BB8 A; 4LF9 E; 4DV2 E; 1QNT A; 2JOX A; 3IWD A; 3F6G A; 4F6M A; 2YRM A; 1YZ9 A; 3AUZ A; 2DIX A; 4R03 A; 2JY9 A; 1MGT A; 4LFA E; 2A25 A; 2EN4 A; 2N3G A; 2H36 X; 5AAS A; 3ADI A; 1TF6 A; 2LJH A; 4DR7 E; 2UXC E; 5A2Q C; 2JWO A; 2WBU A; 1ZAA C; 2B7V A; 4P78 A; 4R2A A; 1T4L B; 4NXM E; 1X49 A; 1X47 A; 4IS1 C; 1X5W A; 4KZS A; 2NA2 A; 4WX9 A; 2NUF A; 2V88 A; 5F3W A; 2D9H A; 1TN9 A; 4JV5 E; 1PDA A; 4O43 A; 1NEI A; 2EPP A; 4M0V A; 3ADL A; 4TUG A; 2M1S A; 2RTX A; 4KWY A; 3HPZ A; 1PJS A; 1X6H A; 2EMZ A; 1I94 E; 2EM2 A; 2JVA A; 4LF8 E; 2YTJ A; 2DMI A; 4IJD A; 2EMH A; 5IV8 B; 3L00 A; 2NUE A; 2GHF A; 2UU9 E; 4DV6 E; 4F2J C; 4DR3 E; 1GZ6 A; 2JYA A; 2VQF E; 2L3J A; 2EOF A; 2EPR A; 3FIG A; 4ZYE A; 5A6J A; 1IQO A; 1DGC A; 2EM5 A; 3BGH A; 5AC5 A; 1UIL A; 2EMK A; 3HQ1 A; 2HJJ A; 2EPK X; 2EOM A; 3C6K A; 3J7Y p; 3BF2 A; 2LUP B; 2M9A A; 2CSH A; 4X8W A; 1O0W A; 2EM4 A; 2WBT A; 3C4T A; 4GEQ B; 4JI4 E; 2N8X A; 1LLM C; 2EOJ A; 4O5G A; 4DR4 E; 2DB2 A; 5LLQ A; 2LUQ A; 2BB8 A; 4WYQ B; 4DV5 E; 2UUC E; 2KON A; 2EMF A; 2RPC A; 4RHB B; 1FJG E; 2JR1 A; 2EM9 A; 2EOY A; 2WZO A; 1HNW E; 3MHH C; 1X6E A; 5TSE A; 2LVH A; 2YRH A; 4F9C B; 5KL3 A; 4NHR A; 3ADJ A; 3M99 B; 2EM7 A; 3OTO E; 2EMW A; 2ODR D; 1A1H A; 3J81 C; 1YSA C; 1G2F C; 1DQ3 A; 4M2Z A; 2ENA A; 1YFH A; 1B69 A; 1EH8 A; 1MEY C; 4X66 E; 5LMU E; 4DUZ E; 1G2D C; 4JI6 E; 2FGG A; 4GZN C; 2EPX A; 4YY3 E; 2LV2 A; 2WBS A; 2EJ4 A; 2EPO A; 1UBD C; 4BCA A; 2EOQ A; 4WSP A; 5KL4 A; 2DLK A; 5IT9 C; 2HHH E; 1WHN A; 2R76 A; 4HTG A; 4LFC E; 2ENC A; 2RQL A; 4NXN E; 2LE2 A; 2LJU A; 3H09 A; 4J8Z A; 1X6F A; 2EMB A; 2L6M A; 2MKD A; 4JYA E; 4X65 E; 1XMQ E; 2EPM X; 1YPN A; 1AAY A; 1DI2 A; 4F9A B; 1N33 E; 4DV1 E; 4DR1 E; 3THO B; 4DV0 E; 4LF5 E; 2EQ1 A; 4BBY A; 4DR6 E; 1T4N A; 1RQ0 A; 4B3T E; 2EOS A; 3HTX A; 2EMA A; 4MLV A; 4BMJ A; 3AV0 A; 2VF1 A; 2L2K B; 4F54 A; 4JI8 E; 4WPY A; 3EPJ A; 2F8B A; 2FV4 B; 2RSM A; 1F2I G; 1RMD A; 2MC5 A; 2YTN A; 2EQ3 A; 5AE2 A; 1XNR E; 4JI5 E; 4GKK E; 2YTD A; 2YTG A; 2E1M A; 2E5L E; 1SFE A; 2MKN A; 2EMX A; #chains in the Genus database with same CATH homology 2EE8 A; 1A1G A; 2M9A A; 3MHS C; 4WSG A; 4R2Q A; 2DGC A; 2CSH A; 2EMC A; 2EM4 A; 2WBT A; 5KL6 A; 2DLQ A; 1P47 A; 1X3C A; 2EOZ A; 2LCE A; 2EN8 A; 4R2C A; 1LLM C; 2YTI A; 3EPK A; 2EN7 A; 2EP3 A; 2EOJ A; 2LO3 A; 1Z1B A; 1ZU1 A; 2EN6 A; 2EOX A; 1NCS A; 3EPH A; 1WJP A; 2YTO A; 2EMY A; 2YU5 A; 2ELY A; 1YUJ A; 2BB8 A; 1A1J A; 2EOO A; 2EMF A; 2R1F A; 2RPC A; 2ELZ A; 1TF3 A; 1UN6 B; 2NAB A; 2EM9 A; 2EOY A; 1YUI A; 2J7J A; 1JK2 A; 3MHH C; 2MDG A; 1X6E A; 2YSP A; 2LVH A; 5KL7 A; 1A1K A; 1A1I A; 2EM6 A; 2YRH A; 5KL3 A; 3M99 B; 2EMG A; 2YTE A; 2EM7 A; 2DRP A; 1A1H A; 2EMW A; 2HGH A; 2EPZ A; 1YSA C; 4R2E A; 2EPC A; 1G2F C; 2EM3 A; 1BBO A; 2ADR A; 2EM0 A; 2EMI A; 2EL5 A; 2ENA A; 2EN2 A; 1ZR9 A; 2YTQ A; 1BB8 A; 2ENH A; 1B69 A; 2EQ0 A; 4M9V C; 4F6M A; 1MEY C; 1JK1 A; 2PRT A; 2YSO A; 2YRM A; 1G2D C; 4GZN C; 4R2S A; 2EPX A; 5KL2 A; 2A25 A; 2EN4 A; 2LV2 A; 2WBS A; 4X9J A; 1TF6 A; 2EJ4 A; 2EPU A; 1UBD C; 2RSI A; 2EOQ A; 2WBU A; 4R2D A; 1ZAA C; 5KL4 A; 4R2A A; 2DLK A; 2E72 A; 4IS1 C; 1X5W A; 2ENC A; 2EPA A; 2YTP A; 1X6F A; 2EMB A; 2MKD A; 2EOE A; 5KL5 A; 2EOR A; 1AAY A; 2D9H A; 4FK5 C; 1TN9 A; 2JP9 A; 2YRK A; 2VRD A; 2EPP A; 1A1L A; 2LT7 A; 2EQ1 A; 2EN3 A; 1X6H A; 2EM8 A; 2EOS A; 2EMZ A; 2CTD A; 3UK3 C; 2EMA A; 2EM2 A; 2EN1 A; 3EPL A; 2I13 A; 2YTJ A; 2DMI A; 2YU8 A; 3EPJ A; 4IJD A; 3VHT B; 2EMH A; 1A1F A; 2GHF A; 4R2P A; 2GLI A; 2CT1 A; 4F2J C; 1F2I G; 1RMD A; 2YTN A; 2EOH A; 2EL4 A; 2EQ3 A; 2EOF A; 2EPR A; 1KJK A; 2JPA A; 1DGC A; 2EML A; 2EM5 A; 2YTF A; 4F6N A; 2YTD A; 2EL6 A; 2YTG A; 2EMK A; 2MKN A; 4R2R A; 2EMX A; 2EOM A; 2EOI A; 2WCC 3;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
