2BBGA

Ragweed pollen allergen from ambrosia trifida v, nmr, 30 structures
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
40
structure length
40
Chain Sequence
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Highly Precise Solution 1H NMR Structure of Ragweed Allergen Amb. T. V
rcsb
molecule tags Allergen
molecule keywords POLLEN ALLERGEN 5
total genus 6
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1998-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03913 Amb_V_allergen Amb V Allergen
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.80 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Amb V Allergen 2bbgA00
3BBGA 1BBGA 2BBGA
chains in the Genus database with same CATH superfamily
2LRSA 4I8OA 2YTQA 4JV5E 4KHPE 2HHHE 1A1JA 1UHZA 2EPZA 1X6FA 4TUIA 2MDRA 4WSGA 2CTDA 2YWQA 1ZR9A 2EN6A 2V87A 3BF2A 4WXDA 4ZYEA 1FKAE 2EM4A 3MHHC 4WPYA 1PKPA 1JK2A 2HJJA 2EMBA 2YRHA 3H09A 4DR3E 3T1YE 2F8BA 2LVHA 2M1SA 4LF5E 4F54A 4LFBE 1WHNA 3J81C 3VHTB 4KWYA 1G2FC 1ZBQA 2EM3A 2EM9A 4RH8A 1SR9A 1UBDC 2LUQA 2VQEE 2NUGA 4DR7E 2L2NA 5DNYA 4L8NA 1PDAA 2EL4A 4WFTA 3J80C 1XMOE 2EPPA 4BHCA 4GEQB 2NABA 1TF6A 1A1IA 3THNA 3IWDA 3VYYA 2EN8A 2RS6A 2LTRA 3ADGA 3BGHA 1EKZA 4JI2E 2EPXA 4M2ZA 5LMNE 2M7QA 4L5NC 3OTOE 4O5GA 3ADLA 2RSMA 4LF7E 4DV7E 1A1GA 2JYAA 2YTFA 2EOIA 2EM7A 3L00A 3EQ1A 2RQLA 2GPIA 4IJDA 4M0VA 2VQFE 1ZU1A 4F6NA 2CSHA 3BIDA 3C4BA 2V83A 2N3GA 4X64E 4OX9E 5CFFE 5IXMB 1EH8A 2EPLX 2H36X 1BB8A 3JTZA 3KZYA 5KL7A 1DI2A 4DV2E 2I9IA 2DRPA 2EPOA 4X8WA 4Q35B 1X5WA 4F2JC 2EMGA 1X3CA 2MKDA 1G2DC 1AH5A 4R2EA 2RSIA 1HNWE 3FIGA 2DB2A 4R2PA 5IWAE 1YZ9A 2FGGA 3M99B 2EP3A 3ECRA 2UUCE 2PRTA 4BC7A 5A6KA 5KL4A 2EOJA 5A6BA 4ZYDA 2ENAA 4R8OA 2FTXB 2YZTA 3EPKA 2YTGA 4WXCA 1L4SA 4WSPA 2RTXA 4BMJA 2ODRC 4IS1C 1DQ3A 3F6HA 3LMLA 4LU9A 4DUYE 5AE3A 2WZOA 4DV3E 2ENHA 2JOBA 1PJTA 4OOGC 1F2IG 1GZ6A 2DSYA 5FLXC 2LJHA 1X6EA 1KJKA 2EN2A 2G7HA 2UUAE 3KZZA 4K0KE 5A6BD 2EQ1A 2EN1A 2EPNA 5BR8E 2B3TB 4F9AB 1WXRA 5KL6A 2YTPA 2LE2A 1HR0E 2EE8A 3LLHA 2EL6A 4J8ZA 3ZOQB 2E1MA 1YYOA 1EH6A 2YTIA 2YSOA 1FJGE 1T4OA 1XNQE 2EMIA 2R1FA 4X62E 1BBOA 1XNRE 2E5LE 4MLVA 2EN7A 4DR6E 1T4LB 3KWRA 1STUA 3IWBA 4R2CA 4DR4E 4B3SE 4KZSA 4MLQA 3EPHA 2IHR1 2EQ0A 2V85A 2YSPA 2L33A 2EOFA 2LO3A 2EQ3A 2V86A 2VE7C 1NEIA 4Q28A 5TSEA 2KONA 1RC7A 4NXME 4WX9A 3MHSC 4TUGA 3BBGA 2L2KB 5IT9C 1B69A 2HGHA 1SFEA 2EOEA 2EM6A 1ZBTA 1WJPA 1A1HA 1HNXE 2EN4A 2EMHA 4DUZE 2EOMA 5LLQA 3IWCA 3HQ1A 3UK3C 2BBGA 4DV6E 2M4IA 2MKNA 2DMIA 2EPRA 2YTDA 4JI8E 2KHXA 2GHFA 5LL6R 2LTSA 5IV8B 4ZYHA 2NUFA 1X6HA 1ZAAC 2L3CA 4DR5E 1Z1BA 1EH7A 3AUZA 4X65E 2YRKA 3HXLA 4BHBA 1X48A 5AE1A 1RMDA 2LJUA 2ODRD 2YPNA 2EPKX 3C6KA 1T4NA 2EOXA 4JI4E 5KL5A 2EMZA 5AC4A 2EPMX 5A69A 2EMAA 4M9VC 1WRJA 4BS9A 3C6MA 2K7IA 4B3RE 2MDGA 4JI0E 2JPAA 4LF8E 2EZ6A 3J7Yp 1YFHA 2EMFA 1XMQE 5AASA 4R2RA 4DV1E 1N32E 2EPUA 2EM0A 2V89A 1IMUA 1N3GA 1IQOA 1QU6A 3P1XA 4BBYA 2I13A 2EM2A 1GQEA 2EMWA 2K4VA 2BB8A 2EM8A 4N4RB 3HTXA 1YPNA 1QNTA 4F6MA 2EORA 2EPCA 2UXDE 2L2MA 4DV4E 2A25A 5AE2A 4FK5C 3C4TA 2EMCA 2VRDA 3EPJA 2F4VE 2V88A 2LV2A 2RS7A 5ADZA 2EM5A 4WYQB 1IBME 4JI6E 2EOSA 1MGTA 2N8XA 3F6GA 1O0WA 5A6AA 2DLQA 3THOB 1YSAC 4DR2E 2JR1A 4DV0E 1DGCA 3JAMC 2GLIA 4HEIA 2M9AA 4GKKE 1T38A 1LLMC 2VF1A 1TF3A 1J26A 1N36E 2HC5A 2DGCA 2B7TA 4X66E 4LF4E 4YHHE 2LCEA 2WBUA 3QG5C 4O43A 4DKKA 1GTKA 4GKJE 1AAYA 4LF6E 2E72A 2J7JA 2ZM6E 2CT1A 4RHBB 3J7AG 2UUBE 2LUPB 2B7VA 1UILA 2WBTA 3DF6A 4DV5E 4O4KA 1JK1A 2LT7A 4DMIA 2NA2A 3TQMA 2EMKA 1J5EE 3VYXA 5AC5A 3T1HE 3DJWA 2EOOA 4YY3E 1N34E 4LTYA 2DLKA 1A1FA 1PJSA 4NXNE 2JWOA 1MEYC 4LF9E 2MC6A 2ELZA 2JY9A 1YUIA 2WCC3 2UU9E 5LMUE 4B3TE 2B9DA 2V8QB 4GZNC 2D9HA 2LBSB 3EPLA 2YTOA 4B3ME 4P7DA 2N3HA 2FV4B 5F3WA 2RPCA 4O24A 4F9BB 2EOZA 2EN3A 1PJQA 1I94E 2LMZA 1IQSA 3HPZA 2YT4A 1HNZE 5KL3A 1X49A 3K6QA 3AV0A 4AQYE 2Q8UA 4R2DA 3RMPA 4LFAE 2EPAA 4R2AA 2R76A 2EMYA 2EOYA 2L3JA 2EMXA 1YUJA 1X47A 2UXCE 5A2QC 1YYKA 2EWLA 2ELYA 1RQ0A 1IBKE 4M30A 1UN6B 2JVAA 2EOQA 2L6MA 4R2QA 2UXBE 5A6JA 2CPNA 1NCSA 1WHQA 3MSWA 2KOUA 2EJ4A 1P47A 2YRMA 3JU0A 4NZVA 1N33E 1KYQA 4NHRA 4F9CB 1TN9A 4R2SA 2MC5A 4JI3E 3OMLA 4HTGA 2EOHA 1A1LA 4R03A 2YTJA 5KL2A 2JOXA 2YTNA 2ENCA 3ADIA 2EMLA 1A1KA 2DIXA 2ADRA 2L8TA 4X9JA 2YU8A 2L92A 2YTEA 3VK6A 1IBLE 4DR1E 2WBSA 2JP9A 3HPSA 1BBGA 1T39A 4JI5E 1YYWA 2NUEA 4BCAA 4ZYGA 4P78A 2JXPA 4JI1E 3ADJA 2YU5A 2DMYA 2EL5A 4JYAE 5T6JA 4BC9A 4JI7E 4LFCE
chains in the Genus database with same CATH topology
3BBGA 1BBGA 2BBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBG A;  1BBG A;  2BBG A; 
#chains in the Genus database with same CATH topology
 2LRS A;  4I8O A;  2YTQ A;  4JV5 E;  4KHP E;  2HHH E;  1A1J A;  1UHZ A;  2EPZ A;  1X6F A;  4TUI A;  2MDR A;  4WSG A;  2CTD A;  2YWQ A;  1ZR9 A;  2EN6 A;  2V87 A;  3BF2 A;  4WXD A;  4ZYE A;  1FKA E;  2EM4 A;  3MHH C;  4WPY A;  1PKP A;  1JK2 A;  2HJJ A;  2EMB A;  2YRH A;  3H09 A;  4DR3 E;  3T1Y E;  2F8B A;  2LVH A;  2M1S A;  4LF5 E;  4F54 A;  4LFB E;  1WHN A;  3J81 C;  3VHT B;  4KWY A;  1G2F C;  1ZBQ A;  2EM3 A;  2EM9 A;  4RH8 A;  1SR9 A;  1UBD C;  2LUQ A;  2VQE E;  2NUG A;  4DR7 E;  2L2N A;  5DNY A;  4L8N A;  1PDA A;  2EL4 A;  4WFT A;  3J80 C;  1XMO E;  2EPP A;  4BHC A;  4GEQ B;  2NAB A;  1TF6 A;  1A1I A;  3THN A;  3IWD A;  3VYY A;  2EN8 A;  2RS6 A;  2LTR A;  3ADG A;  3BGH A;  1EKZ A;  4JI2 E;  2EPX A;  4M2Z A;  5LMN E;  2M7Q A;  4L5N C;  3OTO E;  4O5G A;  3ADL A;  2RSM A;  4LF7 E;  4DV7 E;  1A1G A;  2JYA A;  2YTF A;  2EOI A;  2EM7 A;  3L00 A;  3EQ1 A;  2RQL A;  2GPI A;  4IJD A;  4M0V A;  2VQF E;  1ZU1 A;  4F6N A;  2CSH A;  3BID A;  3C4B A;  2V83 A;  2N3G A;  4X64 E;  4OX9 E;  5CFF E;  5IXM B;  1EH8 A;  2EPL X;  2H36 X;  1BB8 A;  3JTZ A;  3KZY A;  5KL7 A;  1DI2 A;  4DV2 E;  2I9I A;  2DRP A;  2EPO A;  4X8W A;  4Q35 B;  1X5W A;  4F2J C;  2EMG A;  1X3C A;  2MKD A;  1G2D C;  1AH5 A;  4R2E A;  2RSI A;  1HNW E;  3FIG A;  2DB2 A;  4R2P A;  5IWA E;  1YZ9 A;  2FGG A;  3M99 B;  2EP3 A;  3ECR A;  2UUC E;  2PRT A;  4BC7 A;  5A6K A;  5KL4 A;  2EOJ A;  5A6B A;  4ZYD A;  2ENA A;  4R8O A;  2FTX B;  2YZT A;  3EPK A;  2YTG A;  4WXC A;  1L4S A;  4WSP A;  2RTX A;  4BMJ A;  2ODR C;  4IS1 C;  1DQ3 A;  3F6H A;  3LML A;  4LU9 A;  4DUY E;  5AE3 A;  2WZO A;  4DV3 E;  2ENH A;  2JOB A;  1PJT A;  4OOG C;  1F2I G;  1GZ6 A;  2DSY A;  5FLX C;  2LJH A;  1X6E A;  1KJK A;  2EN2 A;  2G7H A;  2UUA E;  3KZZ A;  4K0K E;  5A6B D;  2EQ1 A;  2EN1 A;  2EPN A;  5BR8 E;  2B3T B;  4F9A B;  1WXR A;  5KL6 A;  2YTP A;  2LE2 A;  1HR0 E;  2EE8 A;  3LLH A;  2EL6 A;  4J8Z A;  3ZOQ B;  2E1M A;  1YYO A;  1EH6 A;  2YTI A;  2YSO A;  1FJG E;  1T4O A;  1XNQ E;  2EMI A;  2R1F A;  4X62 E;  1BBO A;  1XNR E;  2E5L E;  4MLV A;  2EN7 A;  4DR6 E;  1T4L B;  3KWR A;  1STU A;  3IWB A;  4R2C A;  4DR4 E;  4B3S E;  4KZS A;  4MLQ A;  3EPH A;  2IHR 1;  2EQ0 A;  2V85 A;  2YSP A;  2L33 A;  2EOF A;  2LO3 A;  2EQ3 A;  2V86 A;  2VE7 C;  1NEI A;  4Q28 A;  5TSE A;  2KON A;  1RC7 A;  4NXM E;  4WX9 A;  3MHS C;  4TUG A;  3BBG A;  2L2K B;  5IT9 C;  1B69 A;  2HGH A;  1SFE A;  2EOE A;  2EM6 A;  1ZBT A;  1WJP A;  1A1H A;  1HNX E;  2EN4 A;  2EMH A;  4DUZ E;  2EOM A;  5LLQ A;  3IWC A;  3HQ1 A;  3UK3 C;  2BBG A;  4DV6 E;  2M4I A;  2MKN A;  2DMI A;  2EPR A;  2YTD A;  4JI8 E;  2KHX A;  2GHF A;  5LL6 R;  2LTS A;  5IV8 B;  4ZYH A;  2NUF A;  1X6H A;  1ZAA C;  2L3C A;  4DR5 E;  1Z1B A;  1EH7 A;  3AUZ A;  4X65 E;  2YRK A;  3HXL A;  4BHB A;  1X48 A;  5AE1 A;  1RMD A;  2LJU A;  2ODR D;  2YPN A;  2EPK X;  3C6K A;  1T4N A;  2EOX A;  4JI4 E;  5KL5 A;  2EMZ A;  5AC4 A;  2EPM X;  5A69 A;  2EMA A;  4M9V C;  1WRJ A;  4BS9 A;  3C6M A;  2K7I A;  4B3R E;  2MDG A;  4JI0 E;  2JPA A;  4LF8 E;  2EZ6 A;  3J7Y p;  1YFH A;  2EMF A;  1XMQ E;  5AAS A;  4R2R A;  4DV1 E;  1N32 E;  2EPU A;  2EM0 A;  2V89 A;  1IMU A;  1N3G A;  1IQO A;  1QU6 A;  3P1X A;  4BBY A;  2I13 A;  2EM2 A;  1GQE A;  2EMW A;  2K4V A;  2BB8 A;  2EM8 A;  4N4R B;  3HTX A;  1YPN A;  1QNT A;  4F6M A;  2EOR A;  2EPC A;  2UXD E;  2L2M A;  4DV4 E;  2A25 A;  5AE2 A;  4FK5 C;  3C4T A;  2EMC A;  2VRD A;  3EPJ A;  2F4V E;  2V88 A;  2LV2 A;  2RS7 A;  5ADZ A;  2EM5 A;  4WYQ B;  1IBM E;  4JI6 E;  2EOS A;  1MGT A;  2N8X A;  3F6G A;  1O0W A;  5A6A A;  2DLQ A;  3THO B;  1YSA C;  4DR2 E;  2JR1 A;  4DV0 E;  1DGC A;  3JAM C;  2GLI A;  4HEI A;  2M9A A;  4GKK E;  1T38 A;  1LLM C;  2VF1 A;  1TF3 A;  1J26 A;  1N36 E;  2HC5 A;  2DGC A;  2B7T A;  4X66 E;  4LF4 E;  4YHH E;  2LCE A;  2WBU A;  3QG5 C;  4O43 A;  4DKK A;  1GTK A;  4GKJ E;  1AAY A;  4LF6 E;  2E72 A;  2J7J A;  2ZM6 E;  2CT1 A;  4RHB B;  3J7A G;  2UUB E;  2LUP B;  2B7V A;  1UIL A;  2WBT A;  3DF6 A;  4DV5 E;  4O4K A;  1JK1 A;  2LT7 A;  4DMI A;  2NA2 A;  3TQM A;  2EMK A;  1J5E E;  3VYX A;  5AC5 A;  3T1H E;  3DJW A;  2EOO A;  4YY3 E;  1N34 E;  4LTY A;  2DLK A;  1A1F A;  1PJS A;  4NXN E;  2JWO A;  1MEY C;  4LF9 E;  2MC6 A;  2ELZ A;  2JY9 A;  1YUI A;  2WCC 3;  2UU9 E;  5LMU E;  4B3T E;  2B9D A;  2V8Q B;  4GZN C;  2D9H A;  2LBS B;  3EPL A;  2YTO A;  4B3M E;  4P7D A;  2N3H A;  2FV4 B;  5F3W A;  2RPC A;  4O24 A;  4F9B B;  2EOZ A;  2EN3 A;  1PJQ A;  1I94 E;  2LMZ A;  1IQS A;  3HPZ A;  2YT4 A;  1HNZ E;  5KL3 A;  1X49 A;  3K6Q A;  3AV0 A;  4AQY E;  2Q8U A;  4R2D A;  3RMP A;  4LFA E;  2EPA A;  4R2A A;  2R76 A;  2EMY A;  2EOY A;  2L3J A;  2EMX A;  1YUJ A;  1X47 A;  2UXC E;  5A2Q C;  1YYK A;  2EWL A;  2ELY A;  1RQ0 A;  1IBK E;  4M30 A;  1UN6 B;  2JVA A;  2EOQ A;  2L6M A;  4R2Q A;  2UXB E;  5A6J A;  2CPN A;  1NCS A;  1WHQ A;  3MSW A;  2KOU A;  2EJ4 A;  1P47 A;  2YRM A;  3JU0 A;  4NZV A;  1N33 E;  1KYQ A;  4NHR A;  4F9C B;  1TN9 A;  4R2S A;  2MC5 A;  4JI3 E;  3OML A;  4HTG A;  2EOH A;  1A1L A;  4R03 A;  2YTJ A;  5KL2 A;  2JOX A;  2YTN A;  2ENC A;  3ADI A;  2EML A;  1A1K A;  2DIX A;  2ADR A;  2L8T A;  4X9J A;  2YU8 A;  2L92 A;  2YTE A;  3VK6 A;  1IBL E;  4DR1 E;  2WBS A;  2JP9 A;  3HPS A;  1BBG A;  1T39 A;  4JI5 E;  1YYW A;  2NUE A;  4BCA A;  4ZYG A;  4P78 A;  2JXP A;  4JI1 E;  3ADJ A;  2YU5 A;  2DMY A;  2EL5 A;  4JYA E;  5T6J A;  4BC9 A;  4JI7 E;  4LFC E; 
#chains in the Genus database with same CATH homology
 3BBG A;  1BBG A;  2BBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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