The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
221
|
structure length |
221
|
Chain Sequence |
ERMKTSSEHVTPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELTKENIDKYREAIDRMKGFK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Helicobacter pylori hypothetical protein O25234
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Helicobacter pylori
|
| molecule keywords |
Hypothetical protein
|
| total genus |
79
|
| structure length |
221
|
| sequence length |
221
|
| ec nomenclature | |
| pdb deposition date | 2006-09-05 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Putative neuraminyllactose-binding hemagglutinin homolog like domain |
#chains in the Genus database with same CATH superfamily 2I9I A; 3BGH A; #chains in the Genus database with same CATH topology 2V85 A; 3C4T A; 4LFA E; 3P1X A; 3EPH A; 1WHQ A; 3AV0 A; 4BHB A; 2EQ1 A; 1X6F A; 2JVA A; 5KL7 A; 3MHH C; 3HPS A; 3DJW A; 4ZYH A; 1L4S A; 3IWC A; 1N36 E; 4Q28 A; 2R1F A; 2RS7 A; 4KZS A; 1HNX E; 4ZYG A; 2LTR A; 1GTK A; 4R2E A; 4ZYE A; 4JI8 E; 1MEY C; 1FJG E; 4WYQ B; 2EM0 A; 3BBG A; 4B3S E; 2EM3 A; 2YSO A; 1N3G A; 4JI7 E; 3THO B; 2WZO A; 4JI2 E; 4M9V C; 1UHZ A; 4MLQ A; 4O43 A; 1PJS A; 4DUY E; 1SFE A; 1X49 A; 4BC7 A; 2EPR A; 1BBO A; 2DRP A; 2EOF A; 2JXP A; 2EMZ A; 2JWO A; 4Q35 B; 2EN3 A; 2R76 A; 5IXM B; 1X48 A; 3VYX A; 2WCC 3; 2EJ4 A; 2L6M A; 1A1F A; 1TN9 A; 2L2N A; 3AUZ A; 1JK1 A; 2LCE A; 4R8O A; 2UU9 E; 4RHB B; 4X8W A; 4O4K A; 1AH5 A; 3LML A; 3ADJ A; 2VF1 A; 3HTX A; 1G2F C; 2YTD A; 2EM5 A; 3HQ1 A; 2EPC A; 2PRT A; 4MLV A; 2EPK X; 4X9J A; 2WBT A; 4DV7 E; 2EPP A; 3T1H E; 2EOE A; 3VYY A; 2EWL A; 2E1M A; 2D9H A; 4DR2 E; 2CT1 A; 3J81 C; 1PJQ A; 4O24 A; 2L3C A; 3EPK A; 2EOQ A; 2LJU A; 2EOH A; 2EPU A; 2L92 A; 3ECR A; 4DR1 E; 2JPA A; 1ZBQ A; 1I94 E; 2LO3 A; 4DKK A; 3RMP A; 2LT7 A; 1XNR E; 2YU8 A; 2EPZ A; 2HHH E; 2VQE E; 3T1Y E; 1ZBT A; 4KHP E; 2B7T A; 4X65 E; 2HC5 A; 1DI2 A; 1UIL A; 4NHR A; 3EPL A; 2L3J A; 1Z1B A; 2EMK A; 4LF6 E; 3ADI A; 2L2M A; 2ENH A; 4N4R B; 2EN2 A; 5ADZ A; 2CPN A; 4M0V A; 4JYA E; 5KL6 A; 5KL4 A; 2EM6 A; 5IV8 B; 2EOS A; 5A6B D; 5BR8 E; 2JYA A; 4R2A A; 4HTG A; 2KOU A; 2L2K B; 3FIG A; 2ZM6 E; 4DR4 E; 2V88 A; 2V8Q B; 2EM7 A; 4R03 A; 1A1G A; 4DR3 E; 2EN7 A; 1WRJ A; 4B3T E; 2EOR A; 4X62 E; 1IQS A; 1WHN A; 3F6G A; 1G2D C; 2Q8U A; 3BID A; 2EQ3 A; 2YTQ A; 4BS9 A; 5TSE A; 4M30 A; 4L8N A; 4JI0 E; 2YSP A; 2KHX A; 2MDG A; 4RH8 A; 1DGC A; 2YTO A; 1GQE A; 4WX9 A; 2EOJ A; 2EML A; 4LF8 E; 5LL6 R; 4DMI A; 2RTX A; 2NUG A; 2ODR D; 3F6H A; 2EM9 A; 2YZT A; 5A6K A; 4DUZ E; 4X66 E; 1O0W A; 2EPA A; 1YSA C; 1TF3 A; 1BBG A; 2EOM A; 4WSP A; 1BB8 A; 2EMF A; 1ZR9 A; 1T38 A; 4DV6 E; 2LE2 A; 1A1I A; 2M4I A; 2YTI A; 1X5W A; 5FLX C; 1KJK A; 3JTZ A; 4WXC A; 5AE3 A; 5LLQ A; 2JY9 A; 2UUB E; 4LF5 E; 4BBY A; 1HNW E; 3EPJ A; 4YY3 E; 2YTG A; 2YTJ A; 3QG5 C; 2I9I A; 4NZV A; 2UXC E; 1F2I G; 3JU0 A; 1QU6 A; 5A6J A; 4DR7 E; 4DV1 E; 1X6H A; 1IMU A; 3J7A G; 2EMB A; 2K4V A; 4NXN E; 1X3C A; 2DB2 A; 2V89 A; 5T6J A; 2JOB A; 2L33 A; 3IWB A; 4ZYD A; 2JOX A; 2DMY A; 4LU9 A; 4BCA A; 2YRM A; 1YUJ A; 4LF7 E; 2F4V E; 1PJT A; 3MSW A; 1UBD C; 2HGH A; 4F9C B; 5KL5 A; 2DLK A; 2EPN A; 2EMA A; 2IHR 1; 1EH8 A; 3M99 B; 3OTO E; 2HJJ A; 2B9D A; 3JAM C; 2RSI A; 2YT4 A; 2EOX A; 4DV3 E; 2A25 A; 5F3W A; 1YZ9 A; 3HPZ A; 5AE2 A; 2YPN A; 2MDR A; 3UK3 C; 1WJP A; 4L5N C; 3HXL A; 3ZOQ B; 4LFC E; 2RS6 A; 2ADR A; 1XMO E; 3THN A; 2EOO A; 3TQM A; 2J7J A; 1N34 E; 3KZZ A; 2N3H A; 1IBK E; 2EL5 A; 2DIX A; 4I8O A; 4JI1 E; 4KWY A; 4R2R A; 2MC5 A; 2NA2 A; 1J5E E; 4LF9 E; 2LMZ A; 2EM8 A; 1AAY A; 2EZ6 A; 5IWA E; 2YTN A; 2G7H A; 2EE8 A; 5AE1 A; 1RC7 A; 2WBS A; 2FV4 B; 2M9A A; 5AC5 A; 2LRS A; 3LLH A; 1EH6 A; 1N32 E; 2VE7 C; 2LUQ A; 3BF2 A; 2E72 A; 2EMI A; 2EOY A; 1YPN A; 1T39 A; 3L00 A; 2LVH A; 2VQF E; 2L8T A; 2H36 X; 4HEI A; 2FTX B; 3C6K A; 1A1L A; 4IJD A; 5CFF E; 2EN1 A; 4BC9 A; 2V87 A; 5LMN E; 4FK5 C; 4F54 A; 1SR9 A; 1NCS A; 3C4B A; 4LTY A; 3KZY A; 1GZ6 A; 3IWD A; 2CTD A; 4R2S A; 4F2J C; 2BB8 A; 1RMD A; 1YUI A; 3ADG A; 1IQO A; 4DV0 E; 1QNT A; 4F9B B; 2YTP A; 1X6E A; 3KWR A; 3EQ1 A; 4WSG A; 2YRH A; 5KL2 A; 2EMX A; 4DV4 E; 2LV2 A; 2LBS B; 2UXD E; 1YFH A; 1A1J A; 2N3G A; 1HNZ E; 1MGT A; 2EP3 A; 4GEQ B; 4TUI A; 2EOZ A; 2B3T B; 4R2D A; 4X64 E; 2M7Q A; 4GKK E; 2JP9 A; 2K7I A; 5KL3 A; 3J7Y p; 1T4O A; 1P47 A; 2UXB E; 2LTS A; 4LF4 E; 4NXM E; 1YYO A; 1KYQ A; 4F6M A; 1PDA A; 4DR5 E; 4AQY E; 1UN6 B; 2ELZ A; 1YYK A; 1ZAA C; 1STU A; 2UUA E; 1FKA E; 4JI3 E; 4O5G A; 2DMI A; 2ENC A; 4DR6 E; 4R2P A; 4WXD A; 2V83 A; 2N8X A; 4TUG A; 2GHF A; 3K6Q A; 2VRD A; 2GLI A; 4B3M E; 4J8Z A; 2DGC A; 2DSY A; 1N33 E; 2B7V A; 2ELY A; 2MC6 A; 2LJH A; 4WFT A; 4BMJ A; 2YU5 A; 1NEI A; 4R2C A; 1IBM E; 1A1H A; 5A2Q C; 2EPL X; 2NAB A; 3C6M A; 4M2Z A; 1EKZ A; 2EMW A; 4R2Q A; 2EMY A; 4DV2 E; 4IS1 C; 2NUF A; 4OX9 E; 2EQ0 A; 5DNY A; 2KON A; 1A1K A; 2EMC A; 2EN8 A; 4JI5 E; 4YHH E; 3DF6 A; 2RQL A; 2EMG A; 2EOI A; 4OOG C; 5A69 A; 2UUC E; 2EPO A; 3OML A; 2EPM X; 1XMQ E; 4JI6 E; 5A6A A; 1EH7 A; 2EN4 A; 2EL6 A; 2RPC A; 2YTE A; 2M1S A; 4WPY A; 5A6B A; 4GZN C; 1T4N A; 2FGG A; 4BHC A; 1LLM C; 1XNQ E; 2EPX A; 2MKN A; 1X47 A; 2DLQ A; 3H09 A; 1HR0 E; 5AAS A; 1RQ0 A; 2EN6 A; 2EL4 A; 4GKJ E; 4JV5 E; 2YTF A; 2WBU A; 3BGH A; 1WXR A; 3MHS C; 4JI4 E; 1YYW A; 1ZU1 A; 2GPI A; 2EMH A; 1T4L B; 2EM4 A; 2JR1 A; 1IBL E; 1J26 A; 2V86 A; 4F9A B; 2RSM A; 2MKD A; 2F8B A; 2LUP B; 3ADL A; 2YWQ A; 3J80 C; 2ODR C; 3VK6 A; 2BBG A; 4DV5 E; 1PKP A; 1DQ3 A; 3VHT B; 5LMU E; 2YRK A; 4F6N A; 4B3R E; 4LFB E; 4P78 A; 2I13 A; 5AC4 A; 1JK2 A; 5IT9 C; 4K0K E; 1TF6 A; 2CSH A; 1B69 A; 2E5L E; 2ENA A; 2NUE A; 2EM2 A; 4P7D A; #chains in the Genus database with same CATH homology 2I9I A; 3BGH A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
